MELO3C013181.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C013181.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr01 : 14040785 .. 14041105 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTTCATCATGGGCCTCTAATCACTTGTGGGCAAAAGAGGAGGAGTCCACCCTAGTTGAGTGGTTGGTAGAGTTGGTCTCCACCAGTGGCTGGAAGTCGGACAATGGGACCTTTAGACCTGGGTACCTGGCACATCTCCAGAGAATGATGGCGGAAAAGGTACTAGGATGTAACATCAAAGGTTCCCAGACTATTGATTGTCAGATAAAGACCCTGAAGAGAACGTTTCAAGACATAGCAGAAATATGCAGGGCATCTTACAGTGGGTTTGGCTGGAACAATGAAGTTAAGTGCATCATCGCTGAGAAGGAATAA

mRNA sequence

ATGGCAAGTTCATCATGGGCCTCTAATCACTTGTGGGCAAAAGAGGAGGAGTCCACCCTAGTTGAGTGGTTGGTAGAGTTGGTCTCCACCAGTGGCTGGAAGTCGGACAATGGGACCTTTAGACCTGGGTACCTGGCACATCTCCAGAGAATGATGGCGGAAAAGGTACTAGGATGTAACATCAAAGGTTCCCAGACTATTGATTGTCAGATAAAGACCCTGAAGAGAACGTTTCAAGACATAGCAGAAATATGCAGGGCATCTTACAGTGGGTTTGGCTGGAACAATGAAGTTAAGTGCATCATCGCTGAGAAGGAATAA

Coding sequence (CDS)

ATGGCAAGTTCATCATGGGCCTCTAATCACTTGTGGGCAAAAGAGGAGGAGTCCACCCTAGTTGAGTGGTTGGTAGAGTTGGTCTCCACCAGTGGCTGGAAGTCGGACAATGGGACCTTTAGACCTGGGTACCTGGCACATCTCCAGAGAATGATGGCGGAAAAGGTACTAGGATGTAACATCAAAGGTTCCCAGACTATTGATTGTCAGATAAAGACCCTGAAGAGAACGTTTCAAGACATAGCAGAAATATGCAGGGCATCTTACAGTGGGTTTGGCTGGAACAATGAAGTTAAGTGCATCATCGCTGAGAAGGAATAA

Protein sequence

MASSSWASNHLWAKEEESTLVEWLVELVSTSGWKSDNGTFRPGYLAHLQRMMAEKVLGCNIKGSQTIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKCIIAEKE
Homology
[Close]
BLAST of MELO3C013181.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31
Identity = 68/106 (64.15%), Postives = 81/106 (76.42%), Query Frame = 0 

Query: 1   MASSSWASNHLWAKEEESTLVEWLVELVSTSGWKSDNGTFRPGYLAHLQRMMAEKVLGCN 60
           MAS S A  H W KEEE   VE LVELVS+ GW+SDNGTF+PGYLA LQRMMAEK+ G N
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  IKGSQTIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKCIIAEKE 107
           I+ S TIDC +K+LK+T+  IAE+   S SGFGWN E +CIIAE++
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERD 106

[Close]
BLAST of MELO3C013181.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 130.2 bits (326), Expect = 4.2e-27
Identity = 65/106 (61.32%), Postives = 76/106 (71.70%), Query Frame = 0 

Query: 1   MASSSWASNHLWAKEEESTLVEWLVELVSTSGWKSDNGTFRPGYLAHLQRMMAEKVLGCN 60
           M SSS    H W KEEE+ LVE LVELV+  GW+SDNGTFRPGYL  L RMMA K+ G N
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  IKGSQTIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKCIIAEKE 107
           I  S TID +IK +KR F  +AE+   + SGFGWN+E KCI+AEKE
Sbjct: 416 IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKE 460

[Close]
BLAST of MELO3C013181.2 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 57/82 (69.51%), Postives = 67/82 (81.71%), Query Frame = 0 

Query: 25  VELVSTSGWKSDNGTFRPGYLAHLQRMMAEKVLGCNIKGSQTIDCQIKTLKRTFQDIAEI 84
           +ELVS  GWKSDNGTFRPGYLA L RMMAEK+ GC ++ +  IDC+IKTLKRTFQ IAE+
Sbjct: 342 MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEM 401

Query: 85  CRASYSGFGWNNEVKCIIAEKE 107
              + SGFGWN+E KCI+AEKE
Sbjct: 402 LGPACSGFGWNDEEKCIVAEKE 423

[Close]
BLAST of MELO3C013181.2 vs. NCBI nr
Match: XP_008459131.1 (PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 63/106 (59.43%), Postives = 74/106 (69.81%), Query Frame = 0 

Query: 1   MASSSWASNHLWAKEEESTLVEWLVELVSTSGWKSDNGTFRPGYLAHLQRMMAEKVLGCN 60
           M SSS    H W KEEE++    LVELV+  GW+SDNGTF PGYL  L RMMA K+ GCN
Sbjct: 1   MTSSSRLPKHTWTKEEEAS----LVELVNAGGWRSDNGTFHPGYLNQLARMMAFKIPGCN 60

Query: 61  IKGSQTIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKCIIAEKE 107
           I  S TID +IK LKR F  +AE+   + SGFGWN+E KCI+AEKE
Sbjct: 61  IHAS-TIDSRIKLLKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKE 101

[Close]
BLAST of MELO3C013181.2 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 4.3e-24
Identity = 62/106 (58.49%), Postives = 73/106 (68.87%), Query Frame = 0 

Query: 1   MASSSWASNHLWAKEEESTLVEWLVELVSTSGWKSDNGTFRPGYLAHLQRMMAEKVLGCN 60
           M SSS    H W KEEE+     LVELV+  GW+SDNGTFRPGYL  L RMMA K+ G N
Sbjct: 1   MTSSSRLPKHTWTKEEEA----GLVELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  IKGSQTIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKCIIAEKE 107
           I  S TID +IK +KR F  +AE+   + SGFGWN+E KCI+AEKE
Sbjct: 61  IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKE 101

[Close]
BLAST of MELO3C013181.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-31
Identity = 68/106 (64.15%), Postives = 81/106 (76.42%), Query Frame = 0 

Query: 1   MASSSWASNHLWAKEEESTLVEWLVELVSTSGWKSDNGTFRPGYLAHLQRMMAEKVLGCN 60
           MAS S A  H W KEEE   VE LVELVS+ GW+SDNGTF+PGYLA LQRMMAEK+ G N
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  IKGSQTIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKCIIAEKE 107
           I+ S TIDC +K+LK+T+  IAE+   S SGFGWN E +CIIAE++
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERD 106

[Close]
BLAST of MELO3C013181.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.8e-27
Identity = 65/106 (61.32%), Postives = 76/106 (71.70%), Query Frame = 0 

Query: 1   MASSSWASNHLWAKEEESTLVEWLVELVSTSGWKSDNGTFRPGYLAHLQRMMAEKVLGCN 60
           M SSS    H W KEEE+ LVE LVELV+  GW+SDNGTFRPGYL  L RMMA K+ G N
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  IKGSQTIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKCIIAEKE 107
           I  S TID +IK +KR F  +AE+   + SGFGWN+E KCI+AEKE
Sbjct: 416 IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKE 460

[Close]
BLAST of MELO3C013181.2 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-26
Identity = 57/82 (69.51%), Postives = 67/82 (81.71%), Query Frame = 0 

Query: 25  VELVSTSGWKSDNGTFRPGYLAHLQRMMAEKVLGCNIKGSQTIDCQIKTLKRTFQDIAEI 84
           +ELVS  GWKSDNGTFRPGYLA L RMMAEK+ GC ++ +  IDC+IKTLKRTFQ IAE+
Sbjct: 342 MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEM 401

Query: 85  CRASYSGFGWNNEVKCIIAEKE 107
              + SGFGWN+E KCI+AEKE
Sbjct: 402 LGPACSGFGWNDEEKCIVAEKE 423

[Close]
BLAST of MELO3C013181.2 vs. TrEMBL
Match: tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME (uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.0e-25
Identity = 63/106 (59.43%), Postives = 74/106 (69.81%), Query Frame = 0 

Query: 1   MASSSWASNHLWAKEEESTLVEWLVELVSTSGWKSDNGTFRPGYLAHLQRMMAEKVLGCN 60
           M SSS    H W KEEE++    LVELV+  GW+SDNGTF PGYL  L RMMA K+ GCN
Sbjct: 1   MTSSSRLPKHTWTKEEEAS----LVELVNAGGWRSDNGTFHPGYLNQLARMMAFKIPGCN 60

Query: 61  IKGSQTIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKCIIAEKE 107
           I  S TID +IK LKR F  +AE+   + SGFGWN+E KCI+AEKE
Sbjct: 61  IHAS-TIDSRIKLLKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKE 101

[Close]
BLAST of MELO3C013181.2 vs. TrEMBL
Match: tr|A0A1S3CTN6|A0A1S3CTN6_CUCME (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.9e-24
Identity = 62/106 (58.49%), Postives = 73/106 (68.87%), Query Frame = 0 

Query: 1   MASSSWASNHLWAKEEESTLVEWLVELVSTSGWKSDNGTFRPGYLAHLQRMMAEKVLGCN 60
           M SSS    H W KEEE+     LVELV+  GW+SDNGTFRPGYL  L RMMA K+ G N
Sbjct: 1   MTSSSRLPKHTWTKEEEA----GLVELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  IKGSQTIDCQIKTLKRTFQDIAEICRASYSGFGWNNEVKCIIAEKE 107
           I  S TID +IK +KR F  +AE+   + SGFGWN+E KCI+AEKE
Sbjct: 61  IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKE 101

The following BLAST results are available for this feature:
BLAST of MELO3C013181.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008441954.12.2e-3164.15PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
ADN34114.14.2e-2761.32retrotransposon protein [Cucumis melo subsp. melo][more]
ADN33754.11.6e-2669.51retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008459131.13.0e-2559.43PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo][more]
XP_008466949.14.3e-2458.49PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo][more]
BLAST of MELO3C013181.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C013181.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C013181.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME1.4e-3164.15uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
tr|E5GCB5|E5GCB5_CUCME2.8e-2761.32Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|E5GBB2|E5GBB2_CUCME1.1e-2669.51Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME2.0e-2559.43uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=... [more]
tr|A0A1S3CTN6|A0A1S3CTN6_CUCME2.9e-2458.49uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024752Myb/SANT-like_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013181.2.1MELO3C013181.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024752Myb/SANT-like domainPFAMPF12776Myb_DNA-bind_3coord: 12..106
e-value: 1.4E-6
score: 29.1
NoneNo IPR availablePANTHERPTHR31704:SF62SUBFAMILY NOT NAMEDcoord: 10..105
NoneNo IPR availablePANTHERPTHR31704FAMILY NOT NAMEDcoord: 10..105

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013181.2Cucumber (Chinese Long) v3cucmedB540
MELO3C013181.2Watermelon (97103) v2medwmbB214
MELO3C013181.2Wax gourdmedwgoB256
MELO3C013181.2Cucumber (Gy14) v2cgybmedB469
MELO3C013181.2Cucumber (Gy14) v1cgymedB395
MELO3C013181.2Cucurbita maxima (Rimu)cmamedB465
MELO3C013181.2Cucurbita moschata (Rifu)cmomedB454
MELO3C013181.2Wild cucumber (PI 183967)cpimedB527
MELO3C013181.2Cucumber (Chinese Long) v2cumedB513
MELO3C013181.2Bottle gourd (USVL1VR-Ls)lsimedB196
MELO3C013181.2Watermelon (Charleston Gray)medwcgB175
MELO3C013181.2Watermelon (97103) v1medwmB200