MELO3C013179 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013179
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSmall nuclear ribonucleoprotein family protein
Locationchr1 : 13190135 .. 13193780 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAANAAAAAAAAAGAAAATTCACATCTAAACCAAACCGTATAAGCCTTCTTCGTTGCCCTAATTGAAGTTCCATTCCCGTAGCTGGCGACTGTGAGGGCGTGAGCTGCTGCGACTTCCGAGTGAACTCAGACAGAGTTAGGTCTTNNNNNNNNNNNNNNNNNNNNTTGAGATATCTATTTGCTTGAATCGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCTATAGTACTTTCTCATCTCAACTTATTTTGCTTCATTTCATCCTTCCTTTCCCCTTTTCTCTTACGTGTTTCACTTATGCATTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTATTGGATGTTGGTGCACCTTCAGAACTTGATTTTCAGGTTTCTTCAAAGTGTAAGTTCCTTTTCATGATCATTTACTTTATTTTCCATTTTGGGTATCGACGATTTGTTGTTGTTGTTGTTGTTTTTTTTAAACGTAAACGTCTTAAATAGTGAAATTGGTGTGTTCTTCCTCTGATGTTACTTACTTTTGTCTTCACGTTGGAAATTTGTGCAGAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACCTGAGGATTGAAGGCCGAATTATTGTAAGTTCTTTAGACTTGTGGGCTTTTTCTTCGAGAAAATCATCGTGCAAATATCTAGTTTATCTATTCTTAATGTACATTTGAATGTTAAAAAAGCTTACTAGGATTTTAAGTTTCCAAATATTGATTGTACGTCTGGGGTTTTAAGTTATTTTTTTCGAACTGAGGTGCATAGTTATGCTTTTACTGTTTTCCCACTCAAAAGAGATCATTCCAACATGGATGCAAAAGGAAGATAGTTTAATCCTGTTTGGTAATCATTTGATTTTTTGTTTTTTGGTTTTTGAAAATTAAACTTATAAACCCTACTTTGGTCGTTGGAAATTCTGGGGCATTCTCTGCTCATTTGACCTTCCATAAACTTACCAGTTACCTGAACTAGTCATAAGCTTAAAACCCTGCAGATGAAGTTGATATGATTATATGAAAGTTTTATATTCCAAAGAAGATAAAAGTCTTCCTCTGGAGTCTCACGCATAATAATCTAAATGCTTACAGAATCTTAGAAAGCATTGCTTGTCTCCATCGGTGTGCTTGCTCTGCCTCAAAGGATAGGAATCCAGTAACCACTTATTCCTATTTTTAGCTTCGCTAGAAGGGGTTGGTAGCAACTTTTTAAACTTTTGGTCTAAAACTTTGTATTCTTGAGGAGTAAGTAGTTGGTTTTTAGATGCTCTTTAAGGGTGGCCCTTTGAATGTAAAGCTGAAATCCTATGGGGTTGTACAACTCAAGTTCTTTTATGAGAGCTGTGGAAAGAATTATTTGAACAACGTGTGAAGATAAGTCCTGCTCCTTTGTTGATTTTTGTAACCTTGTACAACTTAATTTTTCTTTGTGGACTCATATGTGGATCCTCGAAGATGTGAC

mRNA sequence

AAANAAAAAAAAAGAAAATTCACATCTAAACCAAACCGTATAAGCCTTCTTCGTTGCCCTAATTGAAGTTCCATTCCCGTAGCTGGCGACTGTGAGGGCGTGAGCTGCTGCGACTTCCGAGTGAACTCAGACAGAGTTAGGTCTTNNNNNNNNNNNNNNNNNNNNTTGAGATATCTATTTGCTTGAATCGCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCTATAAACTTGATTTTCAGGTTTCTTCAAAGTAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACCTGAGGATTGAAGGCCGAATTATTAATCTTAGAAAGCATTGCTTGTCTCCATCGGTGTGCTTGCTCTGCCTCAAAGGATAGGAATCCAGTAACCACTTATTCCTATTTTTAGCTTCGCTAGAAGGGGTTGGTAGCAACTTTTTAAACTTTTGGTCTAAAACTTTGTATTCTTGAGGAGTAAGTAGTTGGTTTTTAGATGCTCTTTAAGGGTGGCCCTTTGAATGTAAAGCTGAAATCCTATGGGGTTGTACAACTCAAGTTCTTTTATGAGAGCTGTGGAAAGAATTATTTGAACAACGTGTGAAGATAAGTCCTGCTCCTTTGTTGATTTTTGTAACCTTGTACAACTTAATTTTTCTTTGTGGACTCATATGTGGATCCTCGAAGATGTGAC

Coding sequence (CDS)

ATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCTATAAACTTGATTTTCAGGTTTCTTCAAAGTAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACCTGAGGATTGAAGGCCGAATTATTAATCTTAGAAAGCATTGCTTGTCTCCATCGGTGTGCTTGCTCTGCCTCAAAGGATAG

Protein sequence

MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIINLRKHCLSPSVCLLCLKG*
Homology
[Close]
BLAST of MELO3C013179 vs. Swiss-Prot
Match: RUXE_BOVIN (Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 9.2e-10
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIINLRKH 50
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG II   ++
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEY 53

[Close]
BLAST of MELO3C013179 vs. Swiss-Prot
Match: RUXE_CHICK (Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 9.2e-10
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIINLRKH 50
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG II   ++
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEY 53

[Close]
BLAST of MELO3C013179 vs. Swiss-Prot
Match: RUXE_HUMAN (Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 9.2e-10
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIINLRKH 50
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG II   ++
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEY 53

[Close]
BLAST of MELO3C013179 vs. Swiss-Prot
Match: RUXE_MOUSE (Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 9.2e-10
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIINLRKH 50
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG II   ++
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEY 53

[Close]
BLAST of MELO3C013179 vs. Swiss-Prot
Match: RUXE_PIG (Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 9.2e-10
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIINLRKH 50
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG II   ++
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEY 53

[Close]
BLAST of MELO3C013179 vs. TrEMBL
Match: A0A0E0LR84_ORYPU (Uncharacterized protein OS=Oryza punctata PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.0e-15
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIINLRKH 50
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII   ++
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEY 49

[Close]
BLAST of MELO3C013179 vs. TrEMBL
Match: K3YKH7_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_014746mg PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.0e-15
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIINLRKH 50
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII   ++
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEY 49

[Close]
BLAST of MELO3C013179 vs. TrEMBL
Match: A0A0A0LUF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G418790 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.0e-15
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIINLRKH 50
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII   ++
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEY 49

[Close]
BLAST of MELO3C013179 vs. TrEMBL
Match: B6TNY9_MAIZE (Small nuclear ribonucleoprotein E OS=Zea mays PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.0e-15
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIINLRKH 50
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII   ++
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEY 49

[Close]
BLAST of MELO3C013179 vs. TrEMBL
Match: A0A0E0LR86_ORYPU (Uncharacterized protein OS=Oryza punctata PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.0e-15
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIINLRKH 50
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII   ++
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEY 49

[Close]
BLAST of MELO3C013179 vs. TAIR10
Match: AT2G18740.1 (AT2G18740.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 86.7 bits (213), Expect = 5.7e-18
Identity = 43/43 (100.00%), Postives = 41/43 (95.35%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI 44
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI 43

[Close]
BLAST of MELO3C013179 vs. TAIR10
Match: AT4G30330.1 (AT4G30330.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 86.7 bits (213), Expect = 5.7e-18
Identity = 43/43 (100.00%), Postives = 41/43 (95.35%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI 44
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI 43

[Close]
BLAST of MELO3C013179 vs. NCBI nr
Match: gi|743808050|ref|XP_011018154.1| (PREDICTED: uncharacterized protein LOC105121272 isoform X2 [Populus euphratica])

HSP 1 Score: 89.0 bits (219), Expect = 3.3e-15
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIINLR 48
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII L+
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIVLQ 47

[Close]
BLAST of MELO3C013179 vs. NCBI nr
Match: gi|944236469|gb|KQL00807.1| (hypothetical protein SETIT_014746mg [Setaria italica])

HSP 1 Score: 88.6 bits (218), Expect = 4.3e-15
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIINLRKH 50
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII   ++
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEY 49

[Close]
BLAST of MELO3C013179 vs. NCBI nr
Match: gi|645233839|ref|XP_008223535.1| (PREDICTED: small nuclear ribonucleoprotein E [Prunus mume])

HSP 1 Score: 88.6 bits (218), Expect = 4.3e-15
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIINLRKH 50
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII   ++
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEY 49

[Close]
BLAST of MELO3C013179 vs. NCBI nr
Match: gi|596209025|ref|XP_007223835.1| (hypothetical protein PRUPE_ppa014077mg [Prunus persica])

HSP 1 Score: 88.6 bits (218), Expect = 4.3e-15
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIINLRKH 50
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII   ++
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEY 49

[Close]
BLAST of MELO3C013179 vs. NCBI nr
Match: gi|659107390|ref|XP_008453650.1| (PREDICTED: small nuclear ribonucleoprotein E-like isoform X2 [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 4.3e-15
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1 

Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIINLRKH 50
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII   ++
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEY 49

The following BLAST results are available for this feature:
BLAST of MELO3C013179 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RUXE_BOVIN9.2e-1060.00Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3 SV=1[more]
RUXE_CHICK9.2e-1060.00Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3 SV=1[more]
RUXE_HUMAN9.2e-1060.00Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1 SV=1[more]
RUXE_MOUSE9.2e-1060.00Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=1 SV=1[more]
RUXE_PIG9.2e-1060.00Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1[more]
BLAST of MELO3C013179 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0E0LR84_ORYPU3.0e-1589.80Uncharacterized protein OS=Oryza punctata PE=4 SV=1[more]
K3YKH7_SETIT3.0e-1589.80Uncharacterized protein OS=Setaria italica GN=SETIT_014746mg PE=4 SV=1[more]
A0A0A0LUF2_CUCSA3.0e-1589.80Uncharacterized protein OS=Cucumis sativus GN=Csa_1G418790 PE=4 SV=1[more]
B6TNY9_MAIZE3.0e-1589.80Small nuclear ribonucleoprotein E OS=Zea mays PE=2 SV=1[more]
A0A0E0LR86_ORYPU3.0e-1589.80Uncharacterized protein OS=Oryza punctata PE=4 SV=1[more]
BLAST of MELO3C013179 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G18740.15.7e-18100.00 Small nuclear ribonucleoprotein family protein[more]
AT4G30330.15.7e-18100.00 Small nuclear ribonucleoprotein family protein[more]
BLAST of MELO3C013179 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|743808050|ref|XP_011018154.1|3.3e-1595.74PREDICTED: uncharacterized protein LOC105121272 isoform X2 [Populus euphratica][more]
gi|944236469|gb|KQL00807.1|4.3e-1589.80hypothetical protein SETIT_014746mg [Setaria italica][more]
gi|645233839|ref|XP_008223535.1|4.3e-1589.80PREDICTED: small nuclear ribonucleoprotein E [Prunus mume][more]
gi|596209025|ref|XP_007223835.1|4.3e-1589.80hypothetical protein PRUPE_ppa014077mg [Prunus persica][more]
gi|659107390|ref|XP_008453650.1|4.3e-1589.80PREDICTED: small nuclear ribonucleoprotein E-like isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027078snRNP-E
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
IPR027078snRNP-E
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
GO:0005681spliceosomal complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU44563melon EST collection version 4.0transcribed_cluster
MU63222melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013179T1MELO3C013179T1mRNA
MELO3C013179T2MELO3C013179T2mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU44563MU44563transcribed_cluster
MU63222MU63222transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 20..83
score: 7.0
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 19..85
score: 1.7
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 12..84
score: 1.66
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 1..85
score: 4.0
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 9..85
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C013179Csa7G206940Cucumber (Chinese Long) v2cumeB534
MELO3C013179Cla97C09G173410Watermelon (97103) v2mewmbB228
MELO3C013179Bhi09G001364Wax gourdmewgoB255
MELO3C013179CsaV3_7G021700Cucumber (Chinese Long) v3cucmeB552
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013179Wild cucumber (PI 183967)cpimeB542
MELO3C013179Watermelon (Charleston Gray)mewcgB180
MELO3C013179Watermelon (97103) v1mewmB201
MELO3C013179Bottle gourd (USVL1VR-Ls)lsimeB188
MELO3C013179Cucumber (Gy14) v2cgybmeB472
MELO3C013179Cucumber (Gy14) v1cgymeB397
MELO3C013179Cucurbita maxima (Rimu)cmameB405
MELO3C013179Cucurbita moschata (Rifu)cmomeB397