MELO3C013035 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013035
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRibosomal protein L5
Locationchr4 : 16371561 .. 16371779 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTCTACGCAGTCAGAAATTGATACAGAAAAGGGGTTCGACAGGAAAGTCCTTTCAATCCAATCCATTCTTGAAGTCCAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAGAAAGCACTCTCCGAAGGCATGAAATGTCCAATTTTTTTCTTCAAAATCATTATAGGAATAGTAATGTCTTTCTTAAATTCTCTGGCCGAAATATATAA

mRNA sequence

ATGGAGATTCTACGCAGTCAGAAATTGATACAGAAAAGGGGTTCGACAGGAAAGTCCTTTCAATCCAATCCATTCTTGAAGTCCAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAGAAAGCACTCTCCGAAGGCATGAAATGTCCAATTTTTTTCTTCAAAATCATTATAGGAATAGTAATGTCTTTCTTAAATTCTCTGGCCGAAATATATAA

Coding sequence (CDS)

ATGGAGATTCTACGCAGTCAGAAATTGATACAGAAAAGGGGTTCGACAGGAAAGTCCTTTCAATCCAATCCATTCTTGAAGTCCAATAAAGACAAAGGATATGTCAGTGACCTAGCACGAGAAAGCACTCTCCGAAGGCATGAAATGTCCAATTTTTTTCTTCAAAATCATTATAGGAATAGTAATGTCTTTCTTAAATTCTCTGGCCGAAATATATAA

Protein sequence

MEILRSQKLIQKRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNFFLQNHYRNSNVFLKFSGRNI*
Homology
[Close]
BLAST of MELO3C013035 vs. Swiss-Prot
Match: RM05_OENBE (60S ribosomal protein L5, mitochondrial OS=Oenothera berteroana GN=RPL5 PE=2 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 4.5e-16
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 1 

Query: 1   MEILRSQKLIQ-KRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNFFLQ 56
           MEILR QK IQ +RGSTGKSF+SNPFL+SNKDKGYVSDLAR+S LR H MSNF ++
Sbjct: 55  MEILRGQKFIQTERGSTGKSFRSNPFLESNKDKGYVSDLARQSILRGHGMSNFLVR 110

[Close]
BLAST of MELO3C013035 vs. Swiss-Prot
Match: RM05_BRANA (60S ribosomal protein L5, mitochondrial OS=Brassica napus GN=RPL5 PE=3 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-15
Identity = 43/53 (81.13%), Postives = 44/53 (83.02%), Query Frame = 1 

Query: 1   MEILRSQKLIQ-KRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNF 53
           MEI R QK IQ +RGSTGKSF+SNPFL SNKDKGYVSDLAR+STLR H MSNF
Sbjct: 53  MEIPRGQKFIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNF 105

[Close]
BLAST of MELO3C013035 vs. Swiss-Prot
Match: RM05_ARATH (60S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana GN=RPL5 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-14
Identity = 42/56 (75.00%), Postives = 45/56 (80.36%), Query Frame = 1 

Query: 1   MEILRSQKLIQ-KRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNFFLQ 56
           MEI   QK IQ +RGSTGKSF+SNPFL SNKDKGYVSDLAR+STLR H MSNF ++
Sbjct: 53  MEIPCGQKFIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFLVR 108

[Close]
BLAST of MELO3C013035 vs. Swiss-Prot
Match: RM05_SOLTU (60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-09
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 1 

Query: 1   MEILRSQKLIQKRGSTGKSFQSNPFLKS-NKDKGYVSDLARESTLRRHEMSNFFLQ 56
           MEI   QKL Q R STGKSF+SNPFL S    KGYVSDLAR+STLR H MS+F ++
Sbjct: 55  MEISCGQKLKQ-RASTGKSFRSNPFLGSNKDKKGYVSDLARQSTLRGHGMSHFLVR 109

[Close]
BLAST of MELO3C013035 vs. Swiss-Prot
Match: RM05_MARPO (60S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha GN=RPL5 PE=3 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 7.2e-06
Identity = 33/57 (57.89%), Postives = 37/57 (64.91%), Query Frame = 1 

Query: 1   MEILRSQKLIQ--KRGSTGKSFQSNPFL---KSNKDKGYVSDLARESTLRRHEMSNF 53
           MEI+  QK IQ   RGSTGKSF+ N F+   +S +D GYV+ LAR STLR H M NF
Sbjct: 57  MEIVCGQKFIQTRSRGSTGKSFRFNKFVLNQESKRDTGYVTYLAR-STLRGHIMYNF 112

[Close]
BLAST of MELO3C013035 vs. TrEMBL
Match: G3EU44_CUCME (Ribosomal protein L5 OS=Cucumis melo subsp. melo GN=rpl5 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.8e-17
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 1 

Query: 1   MEILRSQKLIQKRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNF 53
           MEILR QKLIQ RGSTGKSF+SNPFL+SNKDKGYVSDLARESTLR HEMSNF
Sbjct: 56  MEILRGQKLIQTRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHEMSNF 107

[Close]
BLAST of MELO3C013035 vs. TrEMBL
Match: G3EIZ3_CUCSA (Ribosomal protein L5 OS=Cucumis sativus GN=rpl5 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.1e-16
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 1 

Query: 1   MEILRSQKLIQKRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNFFLQ 56
           MEILR QKLIQ RGSTGKSF+SNPFL+SNKDKGYVSDLARESTLR H M +FF +
Sbjct: 56  MEILRGQKLIQTRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHSMFHFFFK 110

[Close]
BLAST of MELO3C013035 vs. TrEMBL
Match: Q7Y6H0_CUCSA (Ribosomal protein L5 OS=Cucumis sativus GN=rpl5 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.6e-15
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 1 

Query: 1   MEILRSQKLIQKRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNFFLQ 56
           MEIL  QKLIQ RGSTGKSF+SNPFL+SNKDKGYVSDLARESTLR H M +FF +
Sbjct: 56  MEILCGQKLIQTRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHSMFHFFFK 110

[Close]
BLAST of MELO3C013035 vs. TrEMBL
Match: K7Z325_LAGSI (Ribosomal protein L5 (Fragment) OS=Lagenaria siceraria PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-13
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 1  MEILRSQKLIQ-KRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNF 53
          MEI R QK IQ +RGSTGKSF+SNPFL+SNKDKGYVSDLAR+STLR H MSNF
Sbjct: 3  MEIPRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMSNF 55

[Close]
BLAST of MELO3C013035 vs. TrEMBL
Match: D5I3H1_CUCPE (Ribosomal protein L5 OS=Cucurbita pepo GN=rpl5 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-13
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 1 

Query: 1   MEILRSQKLIQ-KRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNFFLQ 56
           MEI   QKLIQ +RGSTGKSF+SNPFL+SNKDKGYVSDLAR+STLR H MSNF ++
Sbjct: 53  MEISCGQKLIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMSNFVVR 108

[Close]
BLAST of MELO3C013035 vs. TAIR10
Match: AT2G07725.1 (AT2G07725.1 Ribosomal L5P family protein)

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-16
Identity = 43/53 (81.13%), Postives = 44/53 (83.02%), Query Frame = 1 

Query: 1   MEILRSQKLIQ-KRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNF 53
           MEI R QK IQ +RGSTGKSF+SNPFL SNKDKGYVSDLAR+STLR H MSNF
Sbjct: 53  MEIPRGQKFIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNF 105

[Close]
BLAST of MELO3C013035 vs. TAIR10
Match: ATMG00210.1 (ATMG00210.1 ribosomal protein L5)

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-16
Identity = 43/53 (81.13%), Postives = 44/53 (83.02%), Query Frame = 1 

Query: 1   MEILRSQKLIQ-KRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNF 53
           MEI R QK IQ +RGSTGKSF+SNPFL SNKDKGYVSDLAR+STLR H MSNF
Sbjct: 53  MEIPRGQKFIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNF 105

[Close]
BLAST of MELO3C013035 vs. NCBI nr
Match: gi|345034450|gb|AEN56134.1| (ribosomal protein L5 [Cucumis melo subsp. melo])

HSP 1 Score: 95.5 bits (236), Expect = 4.1e-17
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 1 

Query: 1   MEILRSQKLIQKRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNF 53
           MEILR QKLIQ RGSTGKSF+SNPFL+SNKDKGYVSDLARESTLR HEMSNF
Sbjct: 56  MEILRGQKLIQTRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHEMSNF 107

[Close]
BLAST of MELO3C013035 vs. NCBI nr
Match: gi|346683379|ref|YP_004849341.1| (ribosomal protein L5 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 4.5e-16
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 1 

Query: 1   MEILRSQKLIQKRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNFFLQ 56
           MEILR QKLIQ RGSTGKSF+SNPFL+SNKDKGYVSDLARESTLR H M +FF +
Sbjct: 56  MEILRGQKLIQTRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHSMFHFFFK 110

[Close]
BLAST of MELO3C013035 vs. NCBI nr
Match: gi|31322683|gb|AAP33159.1| (ribosomal protein L5 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 3.8e-15
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 1 

Query: 1   MEILRSQKLIQKRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNFFLQ 56
           MEIL  QKLIQ RGSTGKSF+SNPFL+SNKDKGYVSDLARESTLR H M +FF +
Sbjct: 56  MEILCGQKLIQTRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHSMFHFFFK 110

[Close]
BLAST of MELO3C013035 vs. NCBI nr
Match: gi|730588|sp|Q05492.2|RM05_OENBE (RecName: Full=60S ribosomal protein L5, mitochondrial)

HSP 1 Score: 84.7 bits (208), Expect = 7.2e-14
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 1 

Query: 1   MEILRSQKLIQ-KRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNFFLQ 56
           MEILR QK IQ +RGSTGKSF+SNPFL+SNKDKGYVSDLAR+S LR H MSNF ++
Sbjct: 55  MEILRGQKFIQTERGSTGKSFRSNPFLESNKDKGYVSDLARQSILRGHGMSNFLVR 110

[Close]
BLAST of MELO3C013035 vs. NCBI nr
Match: gi|14029|emb|CAA49284.1| (ribosomal protein L5 (mitochondrion) [Oenothera berteroana])

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-13
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 1   MEILRSQKLIQ-KRGSTGKSFQSNPFLKSNKDKGYVSDLARESTLRRHEMSNF 53
           MEILR QK IQ +RGSTGKSF+SNPFL+SNKDKGYVSDLAR+S LR H MSNF
Sbjct: 55  MEILRGQKFIQTERGSTGKSFRSNPFLESNKDKGYVSDLARQSILRGHGMSNF 107

The following BLAST results are available for this feature:
BLAST of MELO3C013035 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RM05_OENBE4.5e-1676.7960S ribosomal protein L5, mitochondrial OS=Oenothera berteroana GN=RPL5 PE=2 SV=... [more]
RM05_BRANA2.2e-1581.1360S ribosomal protein L5, mitochondrial OS=Brassica napus GN=RPL5 PE=3 SV=2[more]
RM05_ARATH1.1e-1475.0060S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana GN=RPL5 PE=2 SV=... [more]
RM05_SOLTU1.8e-0966.0760S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2[more]
RM05_MARPO7.2e-0657.8960S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha GN=RPL5 PE=3 SV... [more]
BLAST of MELO3C013035 vs. TrEMBL
Match NameE-valueIdentityDescription
G3EU44_CUCME2.8e-1790.38Ribosomal protein L5 OS=Cucumis melo subsp. melo GN=rpl5 PE=4 SV=1[more]
G3EIZ3_CUCSA3.1e-1681.82Ribosomal protein L5 OS=Cucumis sativus GN=rpl5 PE=4 SV=1[more]
Q7Y6H0_CUCSA2.6e-1580.00Ribosomal protein L5 OS=Cucumis sativus GN=rpl5 PE=4 SV=1[more]
K7Z325_LAGSI1.1e-1381.13Ribosomal protein L5 (Fragment) OS=Lagenaria siceraria PE=4 SV=1[more]
D5I3H1_CUCPE1.9e-1376.79Ribosomal protein L5 OS=Cucurbita pepo GN=rpl5 PE=4 SV=1[more]
BLAST of MELO3C013035 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G07725.11.3e-1681.13 Ribosomal L5P family protein[more]
ATMG00210.11.3e-1681.13ATMG00210.1 ribosomal protein L5[more]
BLAST of MELO3C013035 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|345034450|gb|AEN56134.1|4.1e-1790.38ribosomal protein L5 [Cucumis melo subsp. melo][more]
gi|346683379|ref|YP_004849341.1|4.5e-1681.82ribosomal protein L5 [Cucumis sativus][more]
gi|31322683|gb|AAP33159.1|3.8e-1580.00ribosomal protein L5 [Cucumis sativus][more]
gi|730588|sp|Q05492.2|RM05_OENBE7.2e-1476.79RecName: Full=60S ribosomal protein L5, mitochondrial[more]
gi|14029|emb|CAA49284.1|1.2e-1381.13ribosomal protein L5 (mitochondrion) [Oenothera berteroana][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013035T1MELO3C013035T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013035Silver-seed gourdcarmeB0125
MELO3C013035Silver-seed gourdcarmeB0204
MELO3C013035Silver-seed gourdcarmeB0742
MELO3C013035Silver-seed gourdcarmeB0997
MELO3C013035Cucumber (Chinese Long) v3cucmeB068
MELO3C013035Cucumber (Chinese Long) v3cucmeB223
MELO3C013035Cucumber (Chinese Long) v3cucmeB572
MELO3C013035Watermelon (97103) v2mewmbB329
MELO3C013035Watermelon (97103) v2mewmbB344
MELO3C013035Watermelon (97103) v2mewmbB359
MELO3C013035Wax gourdmewgoB397
MELO3C013035Wax gourdmewgoB439
MELO3C013035Wax gourdmewgoB442
MELO3C013035Melon (DHL92) v3.5.1memeB086
MELO3C013035Melon (DHL92) v3.5.1memeB102
MELO3C013035Cucumber (Gy14) v1cgymeB560
MELO3C013035Cucumber (Gy14) v1cgymeB582
MELO3C013035Cucurbita maxima (Rimu)cmameB125
MELO3C013035Cucurbita maxima (Rimu)cmameB230
MELO3C013035Cucurbita maxima (Rimu)cmameB332
MELO3C013035Cucurbita maxima (Rimu)cmameB427
MELO3C013035Cucurbita maxima (Rimu)cmameB840
MELO3C013035Cucurbita moschata (Rifu)cmomeB118
MELO3C013035Cucurbita moschata (Rifu)cmomeB216
MELO3C013035Cucurbita moschata (Rifu)cmomeB325
MELO3C013035Cucurbita moschata (Rifu)cmomeB417
MELO3C013035Cucurbita moschata (Rifu)cmomeB823
MELO3C013035Wild cucumber (PI 183967)cpimeB066
MELO3C013035Wild cucumber (PI 183967)cpimeB220
MELO3C013035Wild cucumber (PI 183967)cpimeB561
MELO3C013035Cucumber (Chinese Long) v2cumeB065
MELO3C013035Cucumber (Chinese Long) v2cumeB228
MELO3C013035Cucumber (Chinese Long) v2cumeB554
MELO3C013035Watermelon (Charleston Gray)mewcgB307
MELO3C013035Watermelon (Charleston Gray)mewcgB329
MELO3C013035Watermelon (Charleston Gray)mewcgB342
MELO3C013035Watermelon (97103) v1mewmB339
MELO3C013035Watermelon (97103) v1mewmB356
MELO3C013035Watermelon (97103) v1mewmB363
MELO3C013035Cucurbita pepo (Zucchini)cpemeB132
MELO3C013035Cucurbita pepo (Zucchini)cpemeB306
MELO3C013035Cucurbita pepo (Zucchini)cpemeB518
MELO3C013035Cucurbita pepo (Zucchini)cpemeB573
MELO3C013035Bottle gourd (USVL1VR-Ls)lsimeB214
MELO3C013035Bottle gourd (USVL1VR-Ls)lsimeB411
MELO3C013035Bottle gourd (USVL1VR-Ls)lsimeB436
MELO3C013035Cucumber (Gy14) v2cgybmeB060
MELO3C013035Cucumber (Gy14) v2cgybmeB189
MELO3C013035Cucumber (Gy14) v2cgybmeB490