MELO3C012988 (gene) Melon (DHL92) v3.5.1

NameMELO3C012988
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative reverse transcriptase
Locationchr4 : 15517510 .. 15519216 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTACCTTAGCAGGCTCTTAAGTCATTTGGAGTCCACTGGCGCCATCAAAGGAGTGTGCCTTGCCAATGATTGCAACATCTCGCATATCCTCTTCGCCGATGACATTCTTCTTTTTGTCGAAGATAATGACCTTTATCTGAAAAATCTTAGAATGGCTATTTCTTTGTTTGAAAAGGCATCTGGGCTCAAAATTAATTTATCAAAATCAGTTATGGTTCCAGTTAATGTCCCATGGCCTAGAGCTTTGGAGTGTGCTTCCTCTTGGGAAATATCTTGCCACACGCTTCCTCTAACCTACTTAGGTGTCCCCCTTGGAGGAAACCCAAAATCCAAACTTTTCTGGAGGAATATTGAGGACAGAATTCAAAAAAAGCTTAGCAACTGGAAATATGCTCACATCTCAAAAGGTGGAAGACTCACGCTAATCAAATCTACTCTCAGTAGTCTCCCGATTTACCAACTATCTGTTTTCCAAGCTCCATCCTCCACGTATAAAAACATTGAAAAACTTTGGAGAAATTTCCTCTGGAAAGGTAGCTGCGGTTCAAAGGGGTCTCACTTAATCAACTGGGCAATAGTTACAAAGCCTAAAGAGGAAGGTGAGCTGGGCATCTCGAAACTCCAAATAACAAATCAAGCTCTCTTATCGAAGTGGCTTTGGCGCTACTATTCGGAGCCTAATTCTCTTTGGAGGAGACTCATCCATATTAAGTATCAAGGTAAACACCCAGGGGATATTCCTTCAAACATTTCCTCTAGCTCCCCTAAAGCTCCGTGGAGATCCATTATTAACAACATAGATTGGTTCAAAAGAAATCAAGGATGGGATTTGAACAATGGAGATCAAATCTCCTTCTGGTTTTCTAACTGGTCTCCAGAAGGTTGTCTTTTTACTGCCTATCCCAGACTCTTTGCCCTCTCTATCGACAAAGATTCCTCAATCAAAGATGTGTGGAACCCAAACAACAATCAATGGGAAATTACTTTTAGAAGAAAGTTGAATGATAGAGAAATTAGTACATGGTAGAGAATTTTAGGGAATCTTCCAGTTCCAAGAACAAACAGAGGTCCAAGTAAACCTACCTGGATTCCCGACAGCAAGAAATCCTTCTTTATCGCCTCTGCTAAAAGTTGTATCTACCATCAGCCGGAGCTTTCGATAGCGAATCCTCGAGTAAAGCTGCTTGATCTTATCTGGAAATCATTCATTCCTATGAAGATAAAATTCTTCCTGTGGTGCCTGGTTCAAAGAAAGCTAAACACAATGGAGGTCATTCAGCAAAGAATGCCAAATTCGCTTCTTCAACCAAATTGGTGTGTGCTTTGCAAGAAAGATAGCGAAACGGGAGCTCACCTGTTCTTCCATTGTGATCTGGTGAAACACCTGTGGTCCCTCCTCCAGCGATCTCTCAATTTTGCCCCTTTTTCCGATGACTTTGAAGCGTTGTTCTCCTTCTTCCTCTCCCTAAATCAATCCCTCCCAAAGCATAAGGTCGTTTTCTGTGGTTTGATAGCTGTCCTTTGGGGCATTTGGGCAGAGAGAAATAATAGAATTTTTGATACTTTAAGTTATCAAAAATCTATTAATAATTTATGGGAAGACTACAAAATTCTCATAGGAAATTGGTGTAGTAGGGATCCTACTTTCAAAAATTATTCAGCAACTACTATCGCTCTTAATCTTAATGCTCTATGTAATTAG

mRNA sequence

ATGGATTACCTTAGCAGGCTCTTAAGTCATTTGGAGTCCACTGGCGCCATCAAAGGAGTGTGCCTTGCCAATGATTGCAACATCTCGCATATCCTCTTCGCCGATGACATTCTTCTTTTTGTCGAAGATAATGACCTTTATCTGAAAAATCTTAGAATGGCTATTTCTTTGTTTGAAAAGGCATCTGGGCTCAAAATTAATTTATCAAAATCAGTTATGGTTCCAGTTAATGTCCCATGGCCTAGAGCTTTGGAGTGTGCTTCCTCTTGGGAAATATCTTGCCACACGCTTCCTCTAACCTACTTAGGTGTCCCCCTTGGAGGAAACCCAAAATCCAAACTTTTCTGGAGGAATATTGAGGACAGAATTCAAAAAAAGCTTAGCAACTGGAAATATGCTCACATCTCAAAAGGTGGAAGACTCACGCTAATCAAATCTACTCTCAGTAGTCTCCCGATTTACCAACTATCTGTTTTCCAAGCTCCATCCTCCACGTATAAAAACATTGAAAAACTTTGGAGAAATTTCCTCTGGAAAGGTAGCTGCGGTTCAAAGGGGTCTCACTTAATCAACTGGGCAATAGTTACAAAGCCTAAAGAGGAAGGTGAGCTGGGCATCTCGAAACTCCAAATAACAAATCAAGCTCTCTTATCGAAGTGGCTTTGGCGCTACTATTCGGAGCCTAATTCTCTTTGGAGGAGACTCATCCATATTAAGTATCAAGGTAAACACCCAGGGGATATTCCTTCAAACATTTCCTCTAGCTCCCCTAAAGCTCCGTGGAGATCCATTATTAACAACATAGATTGGTTCAAAAGAAATCAAGGATGGGATTTGAACAATGGAGATCAAATCTCCTTCTGGTTTTCTAACTGGTCTCCAGAAGCAACTACTATCGCTCTTAATCTTAATGCTCTATGTAATTAG

Coding sequence (CDS)

ATGGATTACCTTAGCAGGCTCTTAAGTCATTTGGAGTCCACTGGCGCCATCAAAGGAGTGTGCCTTGCCAATGATTGCAACATCTCGCATATCCTCTTCGCCGATGACATTCTTCTTTTTGTCGAAGATAATGACCTTTATCTGAAAAATCTTAGAATGGCTATTTCTTTGTTTGAAAAGGCATCTGGGCTCAAAATTAATTTATCAAAATCAGTTATGGTTCCAGTTAATGTCCCATGGCCTAGAGCTTTGGAGTGTGCTTCCTCTTGGGAAATATCTTGCCACACGCTTCCTCTAACCTACTTAGGTGTCCCCCTTGGAGGAAACCCAAAATCCAAACTTTTCTGGAGGAATATTGAGGACAGAATTCAAAAAAAGCTTAGCAACTGGAAATATGCTCACATCTCAAAAGGTGGAAGACTCACGCTAATCAAATCTACTCTCAGTAGTCTCCCGATTTACCAACTATCTGTTTTCCAAGCTCCATCCTCCACGTATAAAAACATTGAAAAACTTTGGAGAAATTTCCTCTGGAAAGGTAGCTGCGGTTCAAAGGGGTCTCACTTAATCAACTGGGCAATAGTTACAAAGCCTAAAGAGGAAGGTGAGCTGGGCATCTCGAAACTCCAAATAACAAATCAAGCTCTCTTATCGAAGTGGCTTTGGCGCTACTATTCGGAGCCTAATTCTCTTTGGAGGAGACTCATCCATATTAAGTATCAAGGTAAACACCCAGGGGATATTCCTTCAAACATTTCCTCTAGCTCCCCTAAAGCTCCGTGGAGATCCATTATTAACAACATAGATTGGTTCAAAAGAAATCAAGGATGGGATTTGAACAATGGAGATCAAATCTCCTTCTGGTTTTCTAACTGGTCTCCAGAAGCAACTACTATCGCTCTTAATCTTAATGCTCTATGTAATTAG

Protein sequence

MDYLSRLLSHLESTGAIKGVCLANDCNISHILFADDILLFVEDNDLYLKNLRMAISLFEKASGLKINLSKSVMVPVNVPWPRALECASSWEISCHTLPLTYLGVPLGGNPKSKLFWRNIEDRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIEKLWRNFLWKGSCGSKGSHLINWAIVTKPKEEGELGISKLQITNQALLSKWLWRYYSEPNSLWRRLIHIKYQGKHPGDIPSNISSSSPKAPWRSIINNIDWFKRNQGWDLNNGDQISFWFSNWSPEATTIALNLNALCN*
BLAST of MELO3C012988 vs. Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.2e-27
Identity = 67/178 (37.64%), Postives = 93/178 (52.25%), Query Frame = 1

Query: 119 IEDRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIEKLWRNFLW 178
           I +R+  ++S W+   +S  GRLTL K+ LSS+P++ +S    P S    +++L R FLW
Sbjct: 16  ILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLW 75

Query: 179 KGSCGSKGSHLINWAIVTKPKEEGELGISKLQITNQALLSKWLWRYYSEPNSLWRRLIHI 238
             +   K  HL+ W+ V  PK+EG LG+   +  N+AL+SK  WR   E NSLW  ++  
Sbjct: 76  GSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQK 135

Query: 239 KYQGKHPGDIPSN---ISSSSPKAPWRSI-INNIDWFKRNQGWDLNNGDQISFWFSNW 293
           KY   H G+I  +   I   S  + WRSI I   D      GW   +G QI FW   W
Sbjct: 136 KY---HVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRW 190

BLAST of MELO3C012988 vs. Swiss-Prot
Match: LORF2_HUMAN (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.1e-10
Identity = 53/223 (23.77%), Postives = 102/223 (45.74%), Query Frame = 1

Query: 17  IKGVCLANDCNISHILFADDILLFVEDNDLYLKNLRMAISLFEKASGLKINLSKSVMVPV 76
           IKG+ L  +  +   LFADD+++++E+  +  +NL   IS F K SG KIN+ KS     
Sbjct: 685 IKGIQLGKE-EVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLY 744

Query: 77  NVPWPRALECASSWEISCHTLPLTYLGVPLGGNPKS--KLFWRNIEDRIQKKLSNWKYAH 136
           N       +       +  +  + YLG+ L  + K   K  ++ +   I++  + WK   
Sbjct: 745 NNNRQTESQIMGELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIP 804

Query: 137 ISKGGRLTLIKSTLSSLPIYQLSV--FQAPSSTYKNIEKLWRNFLWKGSCGSKGSHLINW 196
            S  GR+ ++K  +    IY+ +    + P + +  +EK    F+W     ++    I  
Sbjct: 805 CSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIW-----NQKRARIAK 864

Query: 197 AIVTKPKEEGELGISKLQITNQALLSKWLWRYYSEPN-SLWRR 235
           +I+++  + G + +   ++  +A ++K  W +Y   +   W R
Sbjct: 865 SILSQKNKAGGITLPDFKLYYKATVTKTAWYWYQNRDIDQWNR 901

BLAST of MELO3C012988 vs. TrEMBL
Match: M5XHS0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020085mg PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.5e-59
Identity = 119/295 (40.34%), Postives = 170/295 (57.63%), Query Frame = 1

Query: 2   DYLSRLLSHLESTGAIKGVCLAND-CNISHILFADDILLFVEDNDLYLKNLRMAISLFEK 61
           D LSR++   +    + G+   +D   +SH+ FADD +  ++  + Y  NL   + LF +
Sbjct: 632 DVLSRIIERAQDVNLVHGIVSGHDQVEVSHLQFADDTIFLLDGKEEYWLNLLQLLKLFCE 691

Query: 62  ASGLKINLSKSVMVPVNVPWPRALECASSWEISCHTLPLTYLGVPLGGNPKSKLFWRNIE 121
            SG+KIN +KS ++ +N         A SW       P+ YLG+PLGGNP++  FW  + 
Sbjct: 692 VSGMKINKAKSCILGINFSTDALNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVM 751

Query: 122 DRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIEKLWRNFLWKG 181
           D+++K+L  WK A +SKGGRLTLI++ LSS+P Y +S+F+ P      +E+L RNFLW+G
Sbjct: 752 DKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAAKVEQLMRNFLWEG 811

Query: 182 SCGSKGSHLINWAIVTKPKEEGELGISKLQITNQALLSKWLWRYYSEPNSLWRRLIHIKY 241
               K  HL+ W  VTK KEEG LGI  L+  N+AL +KWLWR+  EPNSLW R+I  KY
Sbjct: 812 LEDGKNCHLVRWERVTKSKEEGGLGIGSLRERNEALRAKWLWRFPLEPNSLWHRIIKSKY 871

Query: 242 QGKHPGDIPSNISSSSPKAPWRSIINNIDWFKRNQGWDLNNGDQISFWFSNWSPE 296
                G     I   S + PWR I    + F +   + + NG++I FW   W  E
Sbjct: 872 GIDSNGWDTKQIDKVSCRNPWREISKGYNSFLQCCRFSVGNGEKIRFWEDFWLKE 926

BLAST of MELO3C012988 vs. TrEMBL
Match: M5WKV4_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015607mg PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.5e-59
Identity = 119/295 (40.34%), Postives = 170/295 (57.63%), Query Frame = 1

Query: 2   DYLSRLLSHLESTGAIKGVCLAND-CNISHILFADDILLFVEDNDLYLKNLRMAISLFEK 61
           D LSR++   +    + G+   +D   +SH+ FADD +  ++  + Y  NL   + LF +
Sbjct: 396 DVLSRIIERAQDVNLVHGIVSGHDQVEVSHLQFADDTIFLLDGKEEYWLNLLQLLKLFCE 455

Query: 62  ASGLKINLSKSVMVPVNVPWPRALECASSWEISCHTLPLTYLGVPLGGNPKSKLFWRNIE 121
            SG+KIN +KS ++ +N         A SW       P+ YLG+PLGGNP++  FW  + 
Sbjct: 456 VSGMKINKAKSCILGINFSTDALNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVM 515

Query: 122 DRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIEKLWRNFLWKG 181
           D+++K+L  WK A +SKGGRLTLI++ LSS+P Y +S+F+ P      +E+L RNFLW+G
Sbjct: 516 DKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAAKVEQLMRNFLWEG 575

Query: 182 SCGSKGSHLINWAIVTKPKEEGELGISKLQITNQALLSKWLWRYYSEPNSLWRRLIHIKY 241
               K  HL+ W  VTK KEEG LGI  L+  N+AL +KWLWR+  EPNSLW R+I  KY
Sbjct: 576 LEDGKNCHLVRWERVTKSKEEGGLGIGSLRERNEALRAKWLWRFPLEPNSLWHRIIKSKY 635

Query: 242 QGKHPGDIPSNISSSSPKAPWRSIINNIDWFKRNQGWDLNNGDQISFWFSNWSPE 296
                G     I   S + PWR I    + F +   + + NG++I FW   W  E
Sbjct: 636 GIDSNGWDTKQIDKVSCRNPWREISKGYNSFLQCCRFSVGNGEKIRFWEDFWLKE 690

BLAST of MELO3C012988 vs. TrEMBL
Match: M5VS59_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016504mg PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 5.7e-59
Identity = 119/295 (40.34%), Postives = 169/295 (57.29%), Query Frame = 1

Query: 2   DYLSRLLSHLESTGAIKGVCLAND-CNISHILFADDILLFVEDNDLYLKNLRMAISLFEK 61
           D LSR++   +    + G+   +D   +SH+ FADD +  ++  + Y  NL   + LF  
Sbjct: 640 DVLSRIIERAQDVNLVHGIVSGHDQVEVSHLQFADDTIFLLDGKEEYWLNLLQLLKLFCD 699

Query: 62  ASGLKINLSKSVMVPVNVPWPRALECASSWEISCHTLPLTYLGVPLGGNPKSKLFWRNIE 121
            SG+KIN +KS ++ +N         A SW       P+ YLG+PLGGNP++  FW  + 
Sbjct: 700 VSGMKINKAKSCILGINFSTEALNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVM 759

Query: 122 DRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIEKLWRNFLWKG 181
           D+++K+L  WK A +SKGGRLTLI++ LSS+P Y +S+F+ P      +E+L RNFLW+G
Sbjct: 760 DKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAAKVEQLMRNFLWEG 819

Query: 182 SCGSKGSHLINWAIVTKPKEEGELGISKLQITNQALLSKWLWRYYSEPNSLWRRLIHIKY 241
               K  HL+ W  VTK KEEG LGI  L+  N+AL +KWLWR+  EPNSLW R+I  KY
Sbjct: 820 LEEGKNCHLVRWERVTKSKEEGGLGIGSLRERNEALRAKWLWRFPLEPNSLWHRIIKSKY 879

Query: 242 QGKHPGDIPSNISSSSPKAPWRSIINNIDWFKRNQGWDLNNGDQISFWFSNWSPE 296
                G     I   S + PWR I    + F +   + + NG++I FW   W  E
Sbjct: 880 GIDSNGWDTKQIDKVSCRNPWREISKGYNSFLQCCRFSVGNGEKIRFWEDLWLKE 934

BLAST of MELO3C012988 vs. TrEMBL
Match: M5X4S0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021750mg PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.4e-57
Identity = 118/295 (40.00%), Postives = 168/295 (56.95%), Query Frame = 1

Query: 2   DYLSRLLSHLESTGAIKGVCLAND-CNISHILFADDILLFVEDNDLYLKNLRMAISLFEK 61
           D LSRL+   +    + G+   +D   +SH+ FADD +  ++  + Y  NL   + LF  
Sbjct: 389 DVLSRLIERAQDVNLVHGIVSGHDQVEVSHLQFADDTIFLLDGKEEYWLNLLQLLKLFCD 448

Query: 62  ASGLKINLSKSVMVPVNVPWPRALECASSWEISCHTLPLTYLGVPLGGNPKSKLFWRNIE 121
            SG+KIN +KS ++ +N         A SW       P+ YLG+PLGGNP++  FW  + 
Sbjct: 449 VSGMKINKAKSCILGINFSTEVLNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVM 508

Query: 122 DRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIEKLWRNFLWKG 181
           ++++K+L  WK A +SKGGRLTLI++ LSS+P Y +S+F+ P      +E+L RNFLW+G
Sbjct: 509 EKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAAKVEQLMRNFLWEG 568

Query: 182 SCGSKGSHLINWAIVTKPKEEGELGISKLQITNQALLSKWLWRYYSEPNSLWRRLIHIKY 241
               K  HL+ W  VTK KEEG LGI  L+  N+AL +KWLWR+  E NSLW R+I  KY
Sbjct: 569 LEEGKKCHLVRWERVTKSKEEGGLGIGSLRERNEALRAKWLWRFPLETNSLWHRIIKSKY 628

Query: 242 QGKHPGDIPSNISSSSPKAPWRSIINNIDWFKRNQGWDLNNGDQISFWFSNWSPE 296
                G     I   S + PWR I    + F +   + + NG++I FW   W  E
Sbjct: 629 GIDSNGWDTKRIDKVSCRNPWREISKGYNSFLQCCRFSVGNGEKIRFWEDLWLKE 683

BLAST of MELO3C012988 vs. TrEMBL
Match: A5B7T2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013126 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.0e-56
Identity = 122/318 (38.36%), Postives = 180/318 (56.60%), Query Frame = 1

Query: 1    MDYLSRLLSHLESTGAIKGVCLAN----DCNISHILFADDILLFVEDNDLYLKNLRMAIS 60
            M+ LS L       G + G  L      + N+SH+LFADD ++F +     + NL   ++
Sbjct: 1331 MEVLSTLFRRAGEGGFLSGCRLRGRGGVEMNVSHLLFADDTIIFCKAEREQVTNLSWILA 1390

Query: 61   LFEKASGLKINLSKSVMVPVNVPWPRALECASSWEISCHTLPLTYLGVPLGGNPKSKLFW 120
             FE ASGL+INL+KS ++PV        E A+        LP  YLG+PLG + K+   W
Sbjct: 1391 WFEAASGLRINLAKSALIPVGQV-DELEELAAELGCKLGALPTVYLGLPLGAHHKTSSSW 1450

Query: 121  RNIEDRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIEKLWRNF 180
              +E+R++++L+ WK  +ISKGGR+TLIKSTL+S+PIY LS+ + P S  K IEK+ ++F
Sbjct: 1451 DGVEERMRRRLAQWKKQYISKGGRITLIKSTLASIPIYFLSLIRIPKSVTKRIEKIQKDF 1510

Query: 181  LWKGSCGSKGSHLINWAIVTKPKEEGELGISKLQITNQALLSKWLWRYYSEPNSLWRRLI 240
            LW G    + +HLI W +V  PKEEG LGI K+ + N+ALL KW+WRY  E  +LW+R+I
Sbjct: 1511 LWGGGSLERKAHLIKWKVVCSPKEEGGLGIRKIDLLNKALLGKWVWRYAYEKENLWKRVI 1570

Query: 241  HIKYQGKHPGDIPSNISSSSPKAPWRSIINNIDWFKRNQGWDLNNGDQISFWFSNWS--- 300
             +KY  +  G    ++        W+ I+   DW   +  + +  G +I FW   W    
Sbjct: 1571 GVKYGQEGCGWRTKDVCGPYGVGLWKEIMKEADWCWESIVFKVGXGTRILFWTDKWCGNE 1630

Query: 301  ------PEATTIALNLNA 306
                  P+  T+A + NA
Sbjct: 1631 XLSQIFPQLFTLAGHRNA 1647

BLAST of MELO3C012988 vs. TAIR10
Match: AT3G24255.1 (AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 81.6 bits (200), Expect = 9.1e-16
Identity = 44/144 (30.56%), Postives = 71/144 (49.31%), Query Frame = 1

Query: 89  SWEISCHTLPLTYLGVPLGGNPKSKLFWRNIEDRIQKKLSNWKYAHISKGGRLTLIKSTL 148
           S+  +   LP+ YLG+PL     +   +  + ++I+ ++  W   H+S  GRL LI S +
Sbjct: 15  SFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVI 74

Query: 149 SSLPIYQLSVFQAPSSTYKNIEKLWRNFLWKGSCGSKGSHLINWAIVTKPKEEGELGISK 208
            SL  + +S F+ PS+  K I+ +  +FLW G   +     + W+ V  PK+EG LGI  
Sbjct: 75  HSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRS 134

Query: 209 LQ---------ITNQALLSKWLWR 224
           L+         I+    L  W+W+
Sbjct: 135 LKEANKGSFWSISGNTTLGSWMWK 158

BLAST of MELO3C012988 vs. NCBI nr
Match: gi|659093714|ref|XP_008447678.1| (PREDICTED: uncharacterized protein LOC103490087 [Cucumis melo])

HSP 1 Score: 618.2 bits (1593), Expect = 7.6e-174
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 1

Query: 1   MDYLSRLLSHLESTGAIKGVCLANDCNISHILFADDILLFVEDNDLYLKNLRMAISLFEK 60
           MDYLSRLLSHLESTGAIKGVCLANDCNISHILFADDILLFVEDNDLYLKNLRMAISLFEK
Sbjct: 1   MDYLSRLLSHLESTGAIKGVCLANDCNISHILFADDILLFVEDNDLYLKNLRMAISLFEK 60

Query: 61  ASGLKINLSKSVMVPVNVPWPRALECASSWEISCHTLPLTYLGVPLGGNPKSKLFWRNIE 120
           ASGLKINLSKSVMVPVNVPWPRALECASSWEISCHTLPLTYLGVPLGGNPKSKLFWRNIE
Sbjct: 61  ASGLKINLSKSVMVPVNVPWPRALECASSWEISCHTLPLTYLGVPLGGNPKSKLFWRNIE 120

Query: 121 DRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIEKLWRNFLWKG 180
           DRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIEKLWRNFLWKG
Sbjct: 121 DRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIEKLWRNFLWKG 180

Query: 181 SCGSKGSHLINWAIVTKPKEEGELGISKLQITNQALLSKWLWRYYSEPNSLWRRLIHIKY 240
           SCGSKGSHLINWAIVTKPKEEGELGISKLQITNQALLSKWLWRYYSEPNSLWRRLIHIKY
Sbjct: 181 SCGSKGSHLINWAIVTKPKEEGELGISKLQITNQALLSKWLWRYYSEPNSLWRRLIHIKY 240

Query: 241 QGKHPGDIPSNISSSSPKAPWRSIINNIDWFKRNQGWDLNNGDQISFWFSNWSPE 296
           QGKHPGDIPSNISSSSPKAPWRSIINNIDWFKRNQGWDLNNGDQISFWFSNWSPE
Sbjct: 241 QGKHPGDIPSNISSSSPKAPWRSIINNIDWFKRNQGWDLNNGDQISFWFSNWSPE 295

BLAST of MELO3C012988 vs. NCBI nr
Match: gi|659130833|ref|XP_008465376.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 350.5 bits (898), Expect = 3.0e-93
Identity = 171/292 (58.56%), Postives = 207/292 (70.89%), Query Frame = 1

Query: 1   MDYLSRLLSHLESTGAIKGVCLANDCNISHILFADDILLFVEDNDLYLKNLRMAISLFEK 60
           MDYLSRLLSHLE+ GAIKGV   N CNISH+LFADD+L+FVEDN+ YL NL+MA+SLFEK
Sbjct: 108 MDYLSRLLSHLETKGAIKGVSFNNCCNISHLLFADDVLIFVEDNEKYLSNLQMALSLFEK 167

Query: 61  ASGLKINLSKSVMVPVNVPWPRALECASSWEISCHTLPLTYLGVPLGGNPKSKLFWRNIE 120
           ASGL  N SKS + P+N+   R  + A  +      LP  YLGVPLGGNP+S+ FW    
Sbjct: 168 ASGLTFNHSKSTISPINISADRTDQIARFFGFQTKFLPFNYLGVPLGGNPRSRSFWGQTI 227

Query: 121 DRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIEKLWRNFLWKG 180
           + I KKL+ WKY+ ISK GRLTL+K++LSSLP YQLS F+AP S YK IEK WR+FLW G
Sbjct: 228 ECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQLSTFKAPVSVYKEIEKHWRDFLWGG 287

Query: 181 SCGSKGSHLINWAIVTKPKEEGELGISKLQITNQALLSKWLWRYYSEPNSLWRRLIHIKY 240
           S   + +HL+NW I T PKE G LGISKL+ TNQALL KWLWRY++E NSLW++ I  KY
Sbjct: 288 SEDKQNAHLVNWRICTSPKELGGLGISKLKDTNQALLCKWLWRYHNESNSLWKKCIDAKY 347

Query: 241 QGKHPGDIPSNISSSSPKAPWRSIINNIDWFKRNQGWDLNNGDQISFWFSNW 293
              H GDIP    + S K+PW +I    DWF+    W  N+G  +SFW S W
Sbjct: 348 TKNHQGDIPIVGRNCSVKSPWNAIKKWKDWFESKISWIPNDGSSLSFWHSKW 399

BLAST of MELO3C012988 vs. NCBI nr
Match: gi|659086627|ref|XP_008444035.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 292.4 bits (747), Expect = 9.6e-76
Identity = 138/177 (77.97%), Postives = 154/177 (87.01%), Query Frame = 1

Query: 120 EDRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIEKLWRNFLWK 179
           ED+IQKKL+NWKYA ISKGGRLTLIKSTLS+LPIYQLSVFQAPS T KNIEK WR FLWK
Sbjct: 31  EDKIQKKLNNWKYAQISKGGRLTLIKSTLSNLPIYQLSVFQAPSLTCKNIEKSWRKFLWK 90

Query: 180 GSCGSKGSHLINWAIVTKPKEEGELGISKLQITNQALLSKWLWRYYSEPNSLWRRLIHIK 239
           G+ G +GSHLINW  V+K KEEG LGIS+L +TN+ALL+KWLWRY SEPN+LWR LI  K
Sbjct: 91  GNNGIEGSHLINWTKVSKSKEEGGLGISRLHVTNKALLTKWLWRYLSEPNALWRSLIQCK 150

Query: 240 YQGKHPGDIPSNISSSSPKAPWRSIINN-IDWFKRNQGWDLNNGDQISFWFSNWSPE 296
           Y+G +PGDIPSNISSS+ KAPWRSII+N IDWFK NQ W LNNGDQISFW+SNWS E
Sbjct: 151 YKGNYPGDIPSNISSSTSKAPWRSIIDNIIDWFKSNQSWKLNNGDQISFWYSNWSLE 207

BLAST of MELO3C012988 vs. NCBI nr
Match: gi|659096604|ref|XP_008449185.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 262.7 bits (670), Expect = 8.1e-67
Identity = 132/239 (55.23%), Postives = 163/239 (68.20%), Query Frame = 1

Query: 1   MDYLSRLLSHLESTGAIKGVCLANDCNISHILFADDILLFVEDNDLYLKNLRMAISLFEK 60
           MDYLS L++ LE  G I GV      N++HILFADDIL+FVEDN+ Y+ NL+MA+ LFE 
Sbjct: 27  MDYLSHLITDLEGKGKIGGVKFGPKLNLTHILFADDILIFVEDNEEYISNLKMALLLFES 86

Query: 61  ASGLKINLSKSVMVPVNVPWPRALECASSWEISCHTLPLTYLGVPLGGNPKSKLFWRNIE 120
           ASGL INL+KS + P+NVP  RA     SW +    LP +YLG+PLGGN  S  FW NI 
Sbjct: 87  ASGLNINLNKSTIFPINVPVNRANIIVESWGLRKDILPTSYLGMPLGGNLSSLNFWDNIL 146

Query: 121 DRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIEKLWRNFLWKG 180
            +IQKKLS+WKY+ +SKGGR+TLI STL SLP YQLSVF+A     + IE  WRNFLWKG
Sbjct: 147 QKIQKKLSSWKYSQLSKGGRITLINSTLESLPTYQLSVFKALKGIARKIEASWRNFLWKG 206

Query: 181 SCGSKGSHLINWAIVTKPKEEGELGISKLQITNQALLSKWLWRYYSEPNSLWRRLIHIK 240
           +       LI WA +  PKE+G LGI  +  TN  LL KWLW++ +E + L +RLI  K
Sbjct: 207 TSNGHNISLIRWAKIITPKEKGGLGIHSVHSTNSTLLCKWLWKFLTEKDPLRKRLIIAK 265

BLAST of MELO3C012988 vs. NCBI nr
Match: gi|595831294|ref|XP_007206246.1| (hypothetical protein PRUPE_ppa015607mg, partial [Prunus persica])

HSP 1 Score: 237.3 bits (604), Expect = 3.7e-59
Identity = 119/295 (40.34%), Postives = 170/295 (57.63%), Query Frame = 1

Query: 2   DYLSRLLSHLESTGAIKGVCLAND-CNISHILFADDILLFVEDNDLYLKNLRMAISLFEK 61
           D LSR++   +    + G+   +D   +SH+ FADD +  ++  + Y  NL   + LF +
Sbjct: 396 DVLSRIIERAQDVNLVHGIVSGHDQVEVSHLQFADDTIFLLDGKEEYWLNLLQLLKLFCE 455

Query: 62  ASGLKINLSKSVMVPVNVPWPRALECASSWEISCHTLPLTYLGVPLGGNPKSKLFWRNIE 121
            SG+KIN +KS ++ +N         A SW       P+ YLG+PLGGNP++  FW  + 
Sbjct: 456 VSGMKINKAKSCILGINFSTDALNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVM 515

Query: 122 DRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIEKLWRNFLWKG 181
           D+++K+L  WK A +SKGGRLTLI++ LSS+P Y +S+F+ P      +E+L RNFLW+G
Sbjct: 516 DKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAAKVEQLMRNFLWEG 575

Query: 182 SCGSKGSHLINWAIVTKPKEEGELGISKLQITNQALLSKWLWRYYSEPNSLWRRLIHIKY 241
               K  HL+ W  VTK KEEG LGI  L+  N+AL +KWLWR+  EPNSLW R+I  KY
Sbjct: 576 LEDGKNCHLVRWERVTKSKEEGGLGIGSLRERNEALRAKWLWRFPLEPNSLWHRIIKSKY 635

Query: 242 QGKHPGDIPSNISSSSPKAPWRSIINNIDWFKRNQGWDLNNGDQISFWFSNWSPE 296
                G     I   S + PWR I    + F +   + + NG++I FW   W  E
Sbjct: 636 GIDSNGWDTKQIDKVSCRNPWREISKGYNSFLQCCRFSVGNGEKIRFWEDFWLKE 690

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RNHX1_ARATH2.2e-2737.64Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 P... [more]
LORF2_HUMAN4.1e-1023.77LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1[more]
Match NameE-valueIdentityDescription
M5XHS0_PRUPE2.5e-5940.34Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020085mg PE=4 S... [more]
M5WKV4_PRUPE2.5e-5940.34Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015607mg PE=4 S... [more]
M5VS59_PRUPE5.7e-5940.34Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016504mg PE=4 S... [more]
M5X4S0_PRUPE2.4e-5740.00Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021750mg PE=4 S... [more]
A5B7T2_VITVI2.0e-5638.36Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013126 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G24255.19.1e-1630.56 RNA-directed DNA polymerase (reverse transcriptase)-related family p... [more]
Match NameE-valueIdentityDescription
gi|659093714|ref|XP_008447678.1|7.6e-174100.00PREDICTED: uncharacterized protein LOC103490087 [Cucumis melo][more]
gi|659130833|ref|XP_008465376.1|3.0e-9358.56PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo][more]
gi|659086627|ref|XP_008444035.1|9.6e-7677.97PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo][more]
gi|659096604|ref|XP_008449185.1|8.1e-6755.23PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo][more]
gi|595831294|ref|XP_007206246.1|3.7e-5940.34hypothetical protein PRUPE_ppa015607mg, partial [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012988T1MELO3C012988T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 26..106
score: 6.
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 3..139
score: 1.2

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C012988Silver-seed gourdcarmeB0125
MELO3C012988Silver-seed gourdcarmeB0204
MELO3C012988Silver-seed gourdcarmeB0574
MELO3C012988Silver-seed gourdcarmeB0742
MELO3C012988Silver-seed gourdcarmeB0997
MELO3C012988Cucumber (Chinese Long) v3cucmeB133
MELO3C012988Cucumber (Chinese Long) v3cucmeB220
MELO3C012988Cucumber (Chinese Long) v3cucmeB571
MELO3C012988Watermelon (97103) v2mewmbB325
MELO3C012988Watermelon (97103) v2mewmbB329
MELO3C012988Watermelon (97103) v2mewmbB344
MELO3C012988Watermelon (97103) v2mewmbB365
MELO3C012988Wax gourdmewgoB397
MELO3C012988Wax gourdmewgoB432
MELO3C012988Wax gourdmewgoB442
MELO3C012988Melon (DHL92) v3.5.1memeB084
MELO3C012988Melon (DHL92) v3.5.1memeB102
MELO3C012988Melon (DHL92) v3.5.1memeB136
MELO3C012988Cucumber (Gy14) v1cgymeB012
MELO3C012988Cucumber (Gy14) v1cgymeB171
MELO3C012988Cucumber (Gy14) v1cgymeB482
MELO3C012988Cucumber (Gy14) v1cgymeB581
MELO3C012988Cucurbita maxima (Rimu)cmameB073
MELO3C012988Cucurbita maxima (Rimu)cmameB230
MELO3C012988Cucurbita maxima (Rimu)cmameB332
MELO3C012988Cucurbita maxima (Rimu)cmameB427
MELO3C012988Cucurbita maxima (Rimu)cmameB840
MELO3C012988Cucurbita moschata (Rifu)cmomeB216
MELO3C012988Cucurbita moschata (Rifu)cmomeB325
MELO3C012988Cucurbita moschata (Rifu)cmomeB417
MELO3C012988Cucurbita moschata (Rifu)cmomeB823
MELO3C012988Wild cucumber (PI 183967)cpimeB066
MELO3C012988Wild cucumber (PI 183967)cpimeB131
MELO3C012988Wild cucumber (PI 183967)cpimeB219
MELO3C012988Wild cucumber (PI 183967)cpimeB560
MELO3C012988Cucumber (Chinese Long) v2cumeB065
MELO3C012988Cucumber (Chinese Long) v2cumeB129
MELO3C012988Cucumber (Chinese Long) v2cumeB226
MELO3C012988Cucumber (Chinese Long) v2cumeB552
MELO3C012988Watermelon (Charleston Gray)mewcgB312
MELO3C012988Watermelon (Charleston Gray)mewcgB324
MELO3C012988Watermelon (Charleston Gray)mewcgB329
MELO3C012988Watermelon (Charleston Gray)mewcgB342
MELO3C012988Watermelon (97103) v1mewmB344
MELO3C012988Watermelon (97103) v1mewmB356
MELO3C012988Watermelon (97103) v1mewmB363
MELO3C012988Watermelon (97103) v1mewmB386
MELO3C012988Cucurbita pepo (Zucchini)cpemeB132
MELO3C012988Cucurbita pepo (Zucchini)cpemeB306
MELO3C012988Cucurbita pepo (Zucchini)cpemeB340
MELO3C012988Cucurbita pepo (Zucchini)cpemeB518
MELO3C012988Cucurbita pepo (Zucchini)cpemeB573
MELO3C012988Bottle gourd (USVL1VR-Ls)lsimeB110
MELO3C012988Bottle gourd (USVL1VR-Ls)lsimeB213
MELO3C012988Bottle gourd (USVL1VR-Ls)lsimeB411
MELO3C012988Bottle gourd (USVL1VR-Ls)lsimeB436
MELO3C012988Cucumber (Gy14) v2cgybmeB060
MELO3C012988Cucumber (Gy14) v2cgybmeB113
MELO3C012988Cucumber (Gy14) v2cgybmeB186
MELO3C012988Cucumber (Gy14) v2cgybmeB489