MELO3C012979 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012979
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Gag-pro-like protein
Location	chr4 : 15429595 .. 15429837 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAAAAGAATGTTGAAACTTTTAAGGAATATGCACATCGATGGAGAGAGTTAGCTGTACAAGTGCAACCTCCCCTGACCGATAAAGAATTGATGGTTATGTTCATAAACACTCTTCGGGCCCCATACTATGATAGAATGGTTGGAAGTGCTTCAACTAATTTCTCGGACATCATAACCATTGGAGAGAGGATTGAATTTGGAGTGAAGAATGGAAGGATCTCTGATCCCGCTTCATAG

mRNA sequence

ATGGAAAAAAAGAATGTTGAAACTTTTAAGGAATATGCACATCGATGGAGAGAGTTAGCTGTACAAGTGCAACCTCCCCTGACCGATAAAGAATTGATGGTTATGTTCATAAACACTCTTCGGGCCCCATACTATGATAGAATGGTTGGAAGTGCTTCAACTAATTTCTCGGACATCATAACCATTGGAGAGAGGATTGAATTTGGAGTGAAGAATGGAAGGATCTCTGATCCCGCTTCATAG

Coding sequence (CDS)

ATGGAAAAAAAGAATGTTGAAACTTTTAAGGAATATGCACATCGATGGAGAGAGTTAGCTGTACAAGTGCAACCTCCCCTGACCGATAAAGAATTGATGGTTATGTTCATAAACACTCTTCGGGCCCCATACTATGATAGAATGGTTGGAAGTGCTTCAACTAATTTCTCGGACATCATAACCATTGGAGAGAGGATTGAATTTGGAGTGAAGAATGGAAGGATCTCTGATCCCGCTTCATAG

Protein sequence

MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDIITIGERIEFGVKNGRISDPAS*

Homology

[Close]

BLAST of MELO3C012979 vs. TrEMBL
Match: A0A151UD77_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_049774 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.4e-22
Identity = 48/75 (64.00%), Postives = 66/75 (88.00%), Query Frame = 1


Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           M KK+ ETFKEYA RWRE+A QV+PPL+D+E + +FI+TLRAP+YD+M+G+ S+NFSDI+
Sbjct: 72  MSKKDGETFKEYAQRWREVAAQVEPPLSDRETVALFIDTLRAPFYDKMIGNISSNFSDIV 131

Query: 61  TIGERIEFGVKNGRI 76
            IGERIE G+++G+I
Sbjct: 132 IIGERIENGMRSGKI 146

[Close]

BLAST of MELO3C012979 vs. TrEMBL
Match: A0A0L9V007_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g181300 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-21
Identity = 48/76 (63.16%), Postives = 63/76 (82.89%), Query Frame = 1


Query: 1  MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
          M KK+ ETFKEYA RWREL  QV+PPL D+E++ MF+NTL+ P+Y+ MVG+ S NF+D+I
Sbjct: 1  MGKKDNETFKEYAQRWRELVAQVEPPLFDREMVEMFVNTLQPPFYEHMVGNVSVNFADVI 60

Query: 61 TIGERIEFGVKNGRIS 77
           IGERIE G+KNG+I+
Sbjct: 61 IIGERIEIGLKNGKIA 76

[Close]

BLAST of MELO3C012979 vs. TrEMBL
Match: A0A061E6J4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-21
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 1


Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           MEKK  E+FKEYA RWR +A QVQPPLT+KE  VMF+NTLRAPYY+R+VGSA+ NF+D++
Sbjct: 257 MEKKTTESFKEYAQRWRNVASQVQPPLTEKETTVMFVNTLRAPYYERLVGSATKNFADMV 316

Query: 61  TIGERIEFGVKNGRI 76
             GE IE  +K G+I
Sbjct: 317 ISGEMIETAIKQGKI 331

[Close]

BLAST of MELO3C012979 vs. TrEMBL
Match: S1SIR9_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_046184 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-21
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 1


Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           MEKK  E+FKEYA RWR +A QVQPPLT+KE  VMF+NTLRAPYY+R+VGSA+ NF+D++
Sbjct: 496 MEKKTTESFKEYAQRWRNVASQVQPPLTEKETTVMFVNTLRAPYYERLVGSATKNFADMV 555

Query: 61  TIGERIEFGVKNGRI 76
             GE IE  +K G+I
Sbjct: 556 ISGEMIETAIKQGKI 570

[Close]

BLAST of MELO3C012979 vs. TrEMBL
Match: A0A061FW77_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_012470 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.6e-21
Identity = 48/75 (64.00%), Postives = 62/75 (82.67%), Query Frame = 1


Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           MEKK +E+FKEYA RWR +A QVQPPLT+KE  V+F+NTLRAPYY+R+VGSA+ NF+D++
Sbjct: 246 MEKKTIESFKEYAQRWRNVASQVQPPLTEKETTVIFVNTLRAPYYERLVGSATKNFADMV 305

Query: 61  TIGERIEFGVKNGRI 76
             GE IE  +K G+I
Sbjct: 306 ISGEMIETAIKQGKI 320

[Close]

BLAST of MELO3C012979 vs. NCBI nr
Match: gi|659093710|ref|XP_008447676.1| (PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1


Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII
Sbjct: 240 MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 299

Query: 61  TIGERIEFGVKNGRISDPAS 81
           TIGERIEFGVKNGRISDPAS
Sbjct: 300 TIGERIEFGVKNGRISDPAS 319

[Close]

BLAST of MELO3C012979 vs. NCBI nr
Match: gi|659130442|ref|XP_008465174.1| (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 6.9e-34
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           MEKKNVETFKEYA RWRELA QVQPPLTDKELM MFINTLRAPYYDRMVGSASTNFSD+I
Sbjct: 240 MEKKNVETFKEYAQRWRELATQVQPPLTDKELMAMFINTLRAPYYDRMVGSASTNFSDVI 299

Query: 61  TIGERIEFGVKNGRISDPAS 81
           TIGE IEFGVKNGRI DP+S
Sbjct: 300 TIGEMIEFGVKNGRIFDPSS 319

[Close]

BLAST of MELO3C012979 vs. NCBI nr
Match: gi|659113185|ref|XP_008456442.1| (PREDICTED: uncharacterized protein LOC103496385 [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 3.4e-33
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 1


Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           MEKKNVETFKEYA RWRELA QVQPPLTDKELM MFINTLRAPYYDRMVGS S NFSD+I
Sbjct: 185 MEKKNVETFKEYAQRWRELATQVQPPLTDKELMAMFINTLRAPYYDRMVGSVSINFSDVI 244

Query: 61  TIGERIEFGVKNGRISDPAS 81
           TIGERIEF VKNGRISDPA+
Sbjct: 245 TIGERIEFEVKNGRISDPAA 264

[Close]

BLAST of MELO3C012979 vs. NCBI nr
Match: gi|659114599|ref|XP_008457136.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 71/80 (88.75%), Postives = 72/80 (90.00%), Query Frame = 1


Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           MEKK  ETFKEYA RWRELA QVQPPLT KELM MFINTLRAPYYDRMVGSASTNFSD+I
Sbjct: 243 MEKKECETFKEYAQRWRELAAQVQPPLTFKELMAMFINTLRAPYYDRMVGSASTNFSDVI 302

Query: 61  TIGERIEFGVKNGRISDPAS 81
           TIGERIEFGVKN RI DPAS
Sbjct: 303 TIGERIEFGVKNERIFDPAS 322

[Close]

BLAST of MELO3C012979 vs. NCBI nr
Match: gi|659102853|ref|XP_008452348.1| (PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 4.6e-30
Identity = 67/80 (83.75%), Postives = 72/80 (90.00%), Query Frame = 1


Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           MEK+NVETFKEYA RWREL  QVQPPLTDKEL  +FINTLRAPYYDRMVGSASTNFSD+I
Sbjct: 247 MEKRNVETFKEYAQRWRELVAQVQPPLTDKELTAIFINTLRAPYYDRMVGSASTNFSDVI 306

Query: 61  TIGERIEFGVKNGRISDPAS 81
            IGERIEFGVKN RI+D +S
Sbjct: 307 RIGERIEFGVKNERITDFSS 326

The following BLAST results are available for this feature:

BLAST of MELO3C012979 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151UD77_CAJCA	9.4e-22	64.00	Uncharacterized protein OS=Cajanus cajan GN=KK1_049774 PE=4 SV=1	[more]
A0A0L9V007_PHAAN	2.1e-21	63.16	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g181300 PE=4 SV=1	[more]
A0A061E6J4_THECC	2.7e-21	65.33	Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1	[more]
S1SIR9_THECC	2.7e-21	65.33	Gag-pro-like protein OS=Theobroma cacao GN=TCM_046184 PE=4 SV=1	[more]
A0A061FW77_THECC	3.6e-21	64.00	Gag-pro-like protein OS=Theobroma cacao GN=TCM_012470 PE=4 SV=1	[more]

BLAST of MELO3C012979 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093710\|ref\|XP_008447676.1\|	1.3e-37	100.00	PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo]	[more]
gi\|659130442\|ref\|XP_008465174.1\|	6.9e-34	91.25	PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo]	[more]
gi\|659113185\|ref\|XP_008456442.1\|	3.4e-33	90.00	PREDICTED: uncharacterized protein LOC103496385 [Cucumis melo]	[more]
gi\|659114599\|ref\|XP_008457136.1\|	1.1e-31	88.75	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis me...	[more]
gi\|659102853\|ref\|XP_008452348.1\|	4.6e-30	83.75	PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012979T1	MELO3C012979T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012979	Cucurbita maxima (Rimu)	cmameB073
MELO3C012979	Cucurbita maxima (Rimu)	cmameB230
MELO3C012979	Cucurbita maxima (Rimu)	cmameB332
MELO3C012979	Cucurbita maxima (Rimu)	cmameB427
MELO3C012979	Cucurbita maxima (Rimu)	cmameB840
MELO3C012979	Cucurbita moschata (Rifu)	cmomeB216
MELO3C012979	Cucurbita moschata (Rifu)	cmomeB325
MELO3C012979	Cucurbita moschata (Rifu)	cmomeB417
MELO3C012979	Cucurbita moschata (Rifu)	cmomeB823
MELO3C012979	Wild cucumber (PI 183967)	cpimeB131
MELO3C012979	Wild cucumber (PI 183967)	cpimeB219
MELO3C012979	Wild cucumber (PI 183967)	cpimeB560
MELO3C012979	Cucumber (Chinese Long) v2	cumeB129
MELO3C012979	Cucumber (Chinese Long) v2	cumeB226
MELO3C012979	Cucumber (Chinese Long) v2	cumeB552
MELO3C012979	Watermelon (Charleston Gray)	mewcgB312
MELO3C012979	Watermelon (Charleston Gray)	mewcgB324
MELO3C012979	Watermelon (Charleston Gray)	mewcgB342
MELO3C012979	Watermelon (97103) v1	mewmB344
MELO3C012979	Watermelon (97103) v1	mewmB363
MELO3C012979	Watermelon (97103) v1	mewmB386
MELO3C012979	Cucurbita pepo (Zucchini)	cpemeB132
MELO3C012979	Cucurbita pepo (Zucchini)	cpemeB306
MELO3C012979	Cucurbita pepo (Zucchini)	cpemeB340
MELO3C012979	Cucurbita pepo (Zucchini)	cpemeB518
MELO3C012979	Cucurbita pepo (Zucchini)	cpemeB573
MELO3C012979	Bottle gourd (USVL1VR-Ls)	lsimeB110
MELO3C012979	Bottle gourd (USVL1VR-Ls)	lsimeB213
MELO3C012979	Bottle gourd (USVL1VR-Ls)	lsimeB436
MELO3C012979	Cucumber (Gy14) v2	cgybmeB186
MELO3C012979	Cucumber (Gy14) v2	cgybmeB489
MELO3C012979	Silver-seed gourd	carmeB0125
MELO3C012979	Silver-seed gourd	carmeB0204
MELO3C012979	Silver-seed gourd	carmeB0574
MELO3C012979	Silver-seed gourd	carmeB0742
MELO3C012979	Silver-seed gourd	carmeB0997
MELO3C012979	Cucumber (Chinese Long) v3	cucmeB133
MELO3C012979	Cucumber (Chinese Long) v3	cucmeB220
MELO3C012979	Cucumber (Chinese Long) v3	cucmeB571
MELO3C012979	Watermelon (97103) v2	mewmbB325
MELO3C012979	Watermelon (97103) v2	mewmbB344
MELO3C012979	Watermelon (97103) v2	mewmbB365
MELO3C012979	Wax gourd	mewgoB397
MELO3C012979	Wax gourd	mewgoB432
MELO3C012979	Melon (DHL92) v3.5.1	memeB084
MELO3C012979	Melon (DHL92) v3.5.1	memeB136
MELO3C012979	Cucumber (Gy14) v1	cgymeB171
MELO3C012979	Cucumber (Gy14) v1	cgymeB581