MELO3C012978 (gene) Melon (DHL92) v3.5.1

NameMELO3C012978
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, putative
Locationchr4 : 15428723 .. 15429277 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAGTCTAGTCAAGGCCGAATGGTTGAAATTCAAGAAGACAGGAGAAGAGTCTGACATTAACCAGAACCCTTTACCAAATCATGAGGGTCCCGCCATAAATATTGTTGACACATTCACAGAAAGATACAAGAATAAGGTGTGTGATGTGACTACTTCAATGAATACACTTTTCCAAATCCTTCGTGGAGCTGGATATTTGTCACCAAGGTTTAACAATGATGAGGGGGAGAAGTTTGGATGCGCCAACGAGAAACAGTGTTTATTCCACCCTGAGATAGATGACCATTTCATTGAAGATTGTTGTGAGTTCAAGAATGAGGTACAAAAATTGATGGATGCAAAGATTCTCTTGGTAGGACAAATGAGCATGCAAGAAATCGAGGTCGATATAATTATTGATAAGAAAACTTCAAATGATACCTCAATTACGGTTATCTCCGAGAATACTATTTCGCCTAATCTATTGGTTTATCAATGTCCACCAAAATTTGAGTTGAACAATTGGGAGATCAAGAGGACGCTAAAAGTCTTTAAAGGATCACAAAAGTAA

mRNA sequence

ATGCAGAGTCTAGTCAAGGCCGAATGGTTGAAATTCAAGAAGACAGGAGAAGAGTCTGACATTAACCAGAACCCTTTACCAAATCATGAGGGTCCCGCCATAAATATTGTTGACACATTCACAGAAAGATACAAGAATAAGGTGTGTGATGTGACTACTTCAATGAATACACTTTTCCAAATCCTTCGTGGAGCTGGATATTTGTCACCAAGGTTTAACAATGATGAGGGGGAGAAGTTTGGATGCGCCAACGAGAAACAGTGTTTATTCCACCCTGAGATAGATGACCATTTCATTGAAGATTGTTGTGAGTTCAAGAATGAGGTACAAAAATTGATGGATGCAAAGATTCTCTTGGTAGGACAAATGAGCATGCAAGAAATCGAGGTCGATATAATTATTGATAAGAAAACTTCAAATGATACCTCAATTACGGTTATCTCCGAGAATACTATTTCGCCTAATCTATTGGTTTATCAATGTCCACCAAAATTTGAGTTGAACAATTGGGAGATCAAGAGGACGCTAAAAGTCTTTAAAGGATCACAAAAGTAA

Coding sequence (CDS)

ATGCAGAGTCTAGTCAAGGCCGAATGGTTGAAATTCAAGAAGACAGGAGAAGAGTCTGACATTAACCAGAACCCTTTACCAAATCATGAGGGTCCCGCCATAAATATTGTTGACACATTCACAGAAAGATACAAGAATAAGGTGTGTGATGTGACTACTTCAATGAATACACTTTTCCAAATCCTTCGTGGAGCTGGATATTTGTCACCAAGGTTTAACAATGATGAGGGGGAGAAGTTTGGATGCGCCAACGAGAAACAGTGTTTATTCCACCCTGAGATAGATGACCATTTCATTGAAGATTGTTGTGAGTTCAAGAATGAGGTACAAAAATTGATGGATGCAAAGATTCTCTTGGTAGGACAAATGAGCATGCAAGAAATCGAGGTCGATATAATTATTGATAAGAAAACTTCAAATGATACCTCAATTACGGTTATCTCCGAGAATACTATTTCGCCTAATCTATTGGTTTATCAATGTCCACCAAAATTTGAGTTGAACAATTGGGAGATCAAGAGGACGCTAAAAGTCTTTAAAGGATCACAAAAGTAA

Protein sequence

MQSLVKAEWLKFKKTGEESDINQNPLPNHEGPAINIVDTFTERYKNKVCDVTTSMNTLFQILRGAGYLSPRFNNDEGEKFGCANEKQCLFHPEIDDHFIEDCCEFKNEVQKLMDAKILLVGQMSMQEIEVDIIIDKKTSNDTSITVISENTISPNLLVYQCPPKFELNNWEIKRTLKVFKGSQK*
BLAST of MELO3C012978 vs. TrEMBL
Match: A0A0A0KSJ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528440 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-11
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 1

Query: 55  MNTLFQILRGAGYLSPRFNNDEGEKFG--CANEKQCLFHPEIDDHFIEDCCEFKNEVQKL 114
           M  LFQI   AGY+  R + D+G   G    N+K CLFH    +H IE C EF+ EVQKL
Sbjct: 1   MRILFQIPHEAGYI--RLSVDDGNVDGKESINKKTCLFHLGTCEHSIETCSEFRFEVQKL 60

Query: 115 MDAKILLVGQMSMQEIEVDIIID 136
           MDAKIL+V Q ++QE E+D+I D
Sbjct: 61  MDAKILIVSQTNIQETEIDVIFD 81

BLAST of MELO3C012978 vs. TrEMBL
Match: A0A061FPX5_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_044454 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-10
Identity = 41/114 (35.96%), Postives = 60/114 (52.63%), Query Frame = 1

Query: 1   MQSLVKAEWLKFKKTGEESDINQNPLPNHEGPAINIVDTFTERYKNKVCDVTTSMNTLFQ 60
           +Q L+KA  L F+K  +E ++N NPLPNH G  +N ++      KN + +V T M  +F+
Sbjct: 544 VQGLIKAGILNFEKK-QEQNVNNNPLPNHTGAGVNAIEGEMNVKKN-IPEVETPMEKVFE 603

Query: 61  ILRGAGYLSPRFNNDEGEKFGCANEKQCLFHPEIDDHFIEDCCEFKNEVQKLMD 115
            L  A  L       +           CL+H E   H I+DCC F+ EVQ++MD
Sbjct: 604 ALVKACMLEVWSKRPDMNDSRDIQRPYCLYHKECVGHLIQDCCSFRKEVQRMMD 655

BLAST of MELO3C012978 vs. TrEMBL
Match: A0A061FPX5_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_044454 PE=4 SV=1)

HSP 1 Score: 32.7 bits (73), Expect = 5.7e+02
Identity = 15/31 (48.39%), Postives = 21/31 (67.74%), Query Frame = 1

Query: 88  CLFHPEIDDHFIEDCCEFKNEVQKLMDAKIL 119
           C +H  I+ H IE+C  FK++VQ L+ A IL
Sbjct: 523 CDYHYGIEGHSIENCTTFKHKVQGLIKAGIL 553


HSP 2 Score: 72.8 bits (177), Expect = 5.0e-10
Identity = 56/204 (27.45%), Postives = 97/204 (47.55%), Query Frame = 1

Query: 1   MQSLVKAEWLKFKKTGEESDINQNPLPNHEGPAINIV-DTFTERYKNKVCDVTTSMNTLF 60
           +Q+L+KA  L F K  + S+++ NPLPNH GP +N + +    R K  V ++ T M+ +F
Sbjct: 176 VQALIKAGLLNFAKK-DNSNVDGNPLPNHGGPTVNAIHEGMIRRVKKNVNEIRTPMDRVF 235

Query: 61  QILRGAGYLSPRFNNDEGEKFGCANEKQCLFHPEIDDHFIEDCCEFKNEVQKLMDAKILL 120
           + L     ++P   + E ++ G      C FH  +  H I++C  F+ ++Q+LMD   + 
Sbjct: 236 EALSKIKAITP--ESIEIKEVGHDLTLSCKFHMGVVGHSIQNCDGFRLKLQELMDLSEIE 295

Query: 121 VGQMSMQE----------IEVDIIIDKKTSNDT----------SITVISENTISPNLLVY 180
             + S +E           E    +  K S++           SI +I +  ++   +VY
Sbjct: 296 FYEESEEEEFWKKIIPFLYETFRFVGCKASDEVNQVPRVFDELSIHMIKDEELNEIPMVY 355

Query: 181 QCPPKFELNNWEIKRTLKVFKGSQ 184
              P  EL+NW       +FK S+
Sbjct: 356 PVLPGEELSNWTATELPIIFKSSK 376

BLAST of MELO3C012978 vs. TrEMBL
Match: A0A061FZ93_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_014378 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.2e-09
Identity = 44/120 (36.67%), Postives = 64/120 (53.33%), Query Frame = 1

Query: 1   MQSLVKAEWLKFKKTGEESDINQNPLPNHEGPAINIVDTFTERY-KNKVCDVTTSMNTLF 60
           +Q L+KA  L F+K  E++ +N NPLPNH G  +N ++   E Y K  + +V TSM  +F
Sbjct: 173 VQGLIKAGILNFEKKSEQN-VNNNPLPNHAGAGVNAIER--EVYVKRNIREVETSMEKVF 232

Query: 61  QILRGAGYLS-----PRFNNDEGEKFGCANEKQCLFHPEIDDHFIEDCCEFKNEVQKLMD 115
           + L  A  L      P  N+    +  C     CL+H     H I+DC  F+ EVQ++MD
Sbjct: 233 EALVKADMLEVWPECPNVNDSRDIQRLC-----CLYHKGCMGHSIQDCSSFRKEVQRMMD 284

BLAST of MELO3C012978 vs. TrEMBL
Match: A0A061FZ93_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_014378 PE=4 SV=1)

HSP 1 Score: 34.3 bits (77), Expect = 2.0e+02
Identity = 17/41 (41.46%), Postives = 25/41 (60.98%), Query Frame = 1

Query: 88  CLFHPEIDDHFIEDCCEFKNEVQKLMDAKILLVGQMSMQEI 129
           C +H  I+ H IE+C  FK++VQ L+ A IL   + S Q +
Sbjct: 152 CDYHYGIEGHSIENCTAFKHKVQGLIKAGILNFEKKSEQNV 192


HSP 2 Score: 68.2 bits (165), Expect = 1.2e-08
Identity = 56/205 (27.32%), Postives = 96/205 (46.83%), Query Frame = 1

Query: 1   MQSLVKAEWLKFKKTGEESDINQNPLPNHEGPAINIV-DTFTERYKNKVCDVTTSMNTLF 60
           +Q+L+KA  L F K  + S+++ NPLPNH GP +N + +    R K  V ++ T M+ +F
Sbjct: 456 VQALIKAGLLNFAKK-DNSNVDGNPLPNHGGPTVNAIHERMIRRVKKNVNEIRTPMDRVF 515

Query: 61  QILRGAGYLSPRFNNDEGEKFGCANEKQCLFHPEIDDHFIEDCCEFKNEVQKLMDAKILL 120
           + L     ++P+    E ++ G      C FH  +  H I++C  F+ ++Q+LMD   + 
Sbjct: 516 EALSKIKAITPK--PIEIKEVGHDLTLSCKFHMGVVGHSIQNCDGFRLKLQELMDLSEIE 575

Query: 121 VGQMSMQE----------IEVDIIIDKKTSNDT----------SITVISENTISPNL-LV 180
             + S +E           E    +  K S++           SI +I +      + +V
Sbjct: 576 FYEESEEEEFWKKTIPFLYETFRFVGCKASDEVNQVPRVFDELSIHMIKDEEPDGKIPVV 635

Query: 181 YQCPPKFELNNWEIKRTLKVFKGSQ 184
           Y   P  EL+NW       +FK S+
Sbjct: 636 YPVLPGEELSNWTATELPIIFKSSK 657

BLAST of MELO3C012978 vs. NCBI nr
Match: gi|659122237|ref|XP_008461036.1| (PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo])

HSP 1 Score: 236.1 bits (601), Expect = 4.9e-59
Identity = 119/171 (69.59%), Postives = 138/171 (80.70%), Query Frame = 1

Query: 1   MQSLVKAEWLKFKKTGEESDINQNPLPNHEGPAINIVDTFTERYKNKVCDVTTSMNTLFQ 60
           +QSLVKA WLKFKKTGEE D+NQNPLPNHEGPAIN+VDTFTER KN V  VTTSMNTLFQ
Sbjct: 377 VQSLVKAGWLKFKKTGEELDVNQNPLPNHEGPAINVVDTFTERNKNMVSGVTTSMNTLFQ 436

Query: 61  ILRGAGYLSPRFNNDEGEKFGCANEKQCLFHPEIDDHFIEDCCEFKNEVQKLMDAKILLV 120
           IL GAGYLSPRFNND+GEK GC N+++CLF+ E +DH IEDCCEFKN VQKLMDAKILLV
Sbjct: 437 ILHGAGYLSPRFNNDDGEKIGCVNKEECLFYLETNDHSIEDCCEFKNWVQKLMDAKILLV 496

Query: 121 GQMSMQEIEVDIIID----KKTSNDTSI---TVISENTISPNLLVYQCPPK 165
           GQ+SMQEIEV++I D    KKTSN+T+     ++      P+++ Y   PK
Sbjct: 497 GQISMQEIEVNMITDTSSTKKTSNETTSIWKPLVIHYEEKPSIMSYIQKPK 547

BLAST of MELO3C012978 vs. NCBI nr
Match: gi|659125951|ref|XP_008462935.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-11
Identity = 57/188 (30.32%), Postives = 97/188 (51.60%), Query Frame = 1

Query: 1   MQSLVKAEWLKFKKTGEESDINQNPLPNHEGPAINIVDTFTERYKNKVCDVTTSMNTLFQ 60
           +QSL+ A WL FKK+GE+ ++N+NPLP+HE P +N VD+  E+ KN+V ++   M  LF+
Sbjct: 403 VQSLINAGWLSFKKSGEKPNVNENPLPDHENPKVNAVDSLVEKCKNEVHEIVMPMEALFE 462

Query: 61  ILRGAGYLSPRFNNDE--------GEKFGCAN---EKQCLFHPEIDDHFIEDCCEFKNEV 120
            L  AGY+  R    E        G+ + C     +K C    E  + F++   + + ++
Sbjct: 463 GLFEAGYVEKREKKCERALQRPRCGDAYHCKRYRIQKAC--PDEQANEFLKIVKQSEYKI 522

Query: 121 QKLM---DAKI----LLVGQMSMQEIEVDIIIDKKTSNDTSITVIS---ENTISPNLLVY 165
            + M    A+I    LL+     +++ +DI+      +D S+   S    N  S N +V+
Sbjct: 523 IEQMHHTPARISLLSLLLNSEPHRKVLLDILNKAHVGHDISVEKFSGIIGNITSSNSIVF 582

BLAST of MELO3C012978 vs. NCBI nr
Match: gi|700196230|gb|KGN51407.1| (hypothetical protein Csa_5G528440 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 2.9e-11
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 1

Query: 55  MNTLFQILRGAGYLSPRFNNDEGEKFG--CANEKQCLFHPEIDDHFIEDCCEFKNEVQKL 114
           M  LFQI   AGY+  R + D+G   G    N+K CLFH    +H IE C EF+ EVQKL
Sbjct: 1   MRILFQIPHEAGYI--RLSVDDGNVDGKESINKKTCLFHLGTCEHSIETCSEFRFEVQKL 60

Query: 115 MDAKILLVGQMSMQEIEVDIIID 136
           MDAKIL+V Q ++QE E+D+I D
Sbjct: 61  MDAKILIVSQTNIQETEIDVIFD 81

BLAST of MELO3C012978 vs. NCBI nr
Match: gi|659129309|ref|XP_008464622.1| (PREDICTED: uncharacterized protein LOC103502461 [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 32/72 (44.44%), Postives = 51/72 (70.83%), Query Frame = 1

Query: 1   MQSLVKAEWLKFKKTGEESDINQNPLPNHEGPAINIVDTFTERYKNKVCDVTTSMNTLFQ 60
           +QSL+ A WL FKK+GE+ ++N+NPL +HE P +N+VD+  E+ K++V ++   M  LF+
Sbjct: 413 VQSLINAGWLSFKKSGEKPNVNENPLSDHENPKVNVVDSLVEKCKSEVHEIVMPMEALFE 472

Query: 61  ILRGAGYLSPRF 73
            L  AGY+S  +
Sbjct: 473 GLFEAGYVSHEY 484

BLAST of MELO3C012978 vs. NCBI nr
Match: gi|590567578|ref|XP_007010555.1| (Gag-pro-like protein [Theobroma cacao])

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 41/114 (35.96%), Postives = 60/114 (52.63%), Query Frame = 1

Query: 1   MQSLVKAEWLKFKKTGEESDINQNPLPNHEGPAINIVDTFTERYKNKVCDVTTSMNTLFQ 60
           +Q L+KA  L F+K  +E ++N NPLPNH G  +N ++      KN + +V T M  +F+
Sbjct: 544 VQGLIKAGILNFEKK-QEQNVNNNPLPNHTGAGVNAIEGEMNVKKN-IPEVETPMEKVFE 603

Query: 61  ILRGAGYLSPRFNNDEGEKFGCANEKQCLFHPEIDDHFIEDCCEFKNEVQKLMD 115
            L  A  L       +           CL+H E   H I+DCC F+ EVQ++MD
Sbjct: 604 ALVKACMLEVWSKRPDMNDSRDIQRPYCLYHKECVGHLIQDCCSFRKEVQRMMD 655

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KSJ3_CUCSA2.0e-1151.81Uncharacterized protein OS=Cucumis sativus GN=Csa_5G528440 PE=4 SV=1[more]
A0A061FPX5_THECC1.3e-1035.96Gag-pro-like protein OS=Theobroma cacao GN=TCM_044454 PE=4 SV=1[more]
A0A061FPX5_THECC5.7e+0248.39Gag-pro-like protein OS=Theobroma cacao GN=TCM_044454 PE=4 SV=1[more]
A0A061FZ93_THECC3.2e-0936.67Uncharacterized protein OS=Theobroma cacao GN=TCM_014378 PE=4 SV=1[more]
A0A061FZ93_THECC2.0e+0241.46Uncharacterized protein OS=Theobroma cacao GN=TCM_014378 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659122237|ref|XP_008461036.1|4.9e-5969.59PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo][more]
gi|659125951|ref|XP_008462935.1|1.0e-1130.32PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis me... [more]
gi|700196230|gb|KGN51407.1|2.9e-1151.81hypothetical protein Csa_5G528440 [Cucumis sativus][more]
gi|659129309|ref|XP_008464622.1|1.1e-1044.44PREDICTED: uncharacterized protein LOC103502461 [Cucumis melo][more]
gi|590567578|ref|XP_007010555.1|1.9e-1035.96Gag-pro-like protein [Theobroma cacao][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012978T1MELO3C012978T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C012978Cucurbita pepo (Zucchini)cpemeB132
MELO3C012978Cucurbita pepo (Zucchini)cpemeB306
MELO3C012978Cucurbita pepo (Zucchini)cpemeB340
MELO3C012978Cucurbita pepo (Zucchini)cpemeB518
MELO3C012978Cucurbita pepo (Zucchini)cpemeB573
MELO3C012978Bottle gourd (USVL1VR-Ls)lsimeB110
MELO3C012978Bottle gourd (USVL1VR-Ls)lsimeB213
MELO3C012978Bottle gourd (USVL1VR-Ls)lsimeB436
MELO3C012978Cucumber (Gy14) v2cgybmeB186
MELO3C012978Cucumber (Gy14) v2cgybmeB489
MELO3C012978Silver-seed gourdcarmeB0125
MELO3C012978Silver-seed gourdcarmeB0204
MELO3C012978Silver-seed gourdcarmeB0574
MELO3C012978Silver-seed gourdcarmeB0742
MELO3C012978Silver-seed gourdcarmeB0997
MELO3C012978Cucumber (Chinese Long) v3cucmeB133
MELO3C012978Cucumber (Chinese Long) v3cucmeB220
MELO3C012978Cucumber (Chinese Long) v3cucmeB571
MELO3C012978Watermelon (97103) v2mewmbB325
MELO3C012978Watermelon (97103) v2mewmbB344
MELO3C012978Watermelon (97103) v2mewmbB365
MELO3C012978Wax gourdmewgoB397
MELO3C012978Wax gourdmewgoB432
MELO3C012978Melon (DHL92) v3.5.1memeB084
MELO3C012978Melon (DHL92) v3.5.1memeB136
MELO3C012978Cucumber (Gy14) v1cgymeB171
MELO3C012978Cucumber (Gy14) v1cgymeB581
MELO3C012978Cucurbita maxima (Rimu)cmameB073
MELO3C012978Cucurbita maxima (Rimu)cmameB230
MELO3C012978Cucurbita maxima (Rimu)cmameB332
MELO3C012978Cucurbita maxima (Rimu)cmameB427
MELO3C012978Cucurbita maxima (Rimu)cmameB840
MELO3C012978Cucurbita moschata (Rifu)cmomeB216
MELO3C012978Cucurbita moschata (Rifu)cmomeB325
MELO3C012978Cucurbita moschata (Rifu)cmomeB417
MELO3C012978Cucurbita moschata (Rifu)cmomeB823
MELO3C012978Wild cucumber (PI 183967)cpimeB131
MELO3C012978Wild cucumber (PI 183967)cpimeB219
MELO3C012978Wild cucumber (PI 183967)cpimeB560
MELO3C012978Cucumber (Chinese Long) v2cumeB129
MELO3C012978Cucumber (Chinese Long) v2cumeB226
MELO3C012978Cucumber (Chinese Long) v2cumeB552
MELO3C012978Watermelon (Charleston Gray)mewcgB312
MELO3C012978Watermelon (Charleston Gray)mewcgB324
MELO3C012978Watermelon (Charleston Gray)mewcgB342
MELO3C012978Watermelon (97103) v1mewmB344
MELO3C012978Watermelon (97103) v1mewmB363
MELO3C012978Watermelon (97103) v1mewmB386