MELO3C012942.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C012942.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptiongirdin-like
Locationchr04 : 14882224 .. 14883312 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAGGTGTTAACTATACACCATTGTTAGTTTTATGTCAGGTGTAGCTCAAACAGTTTATACCACCAACTCATAATCTGCAAGAGGGTGGAGGATTTTTCATACGATCCTGAAGATTGTCAAGGAAAAAACGTCAAGCAGTATGCGCATGGAAATCTATAAGAAAGATAAAAGACAAAGGACATTACGAAGGAGTTACTAGTGGGTACGAGACATGGCAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGGAGGTAGTTGAAAGGGGAAAAGAGACAAGCTTCGAACAACCAAATCAATGGATTGAGAAGAGCATAGAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCGACTTATTTGCAGAACGAACTCGAAAAAACTAAGAGTTTCTTAAAAAATCAAGATAAGTTAGAAAAGGATCTTGAAACTTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGCTTGAAAAATGAGAAGACAACATTACAAGCAACAGTGGGGTCGCAAGATGAATATATTAAAGATTTAGAAAATGGGAAGGAATATTTTCTTGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACGAGAAACACAAATAATGGATTTGGAAGCACAAAATCATTCTTTGCGTTAAACTGTTGATAGCCTACATCTGAAGATGGCCAAGCGCTCTAAAGAGTATGAGATACTGATAAATTATGTTGATTCCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTAAGAGGATACACAAGAATATGAGTCATTGAATACAGATTATGTGCAAATGAAGGTTGATTATGATCTGCAAACGAGAGATTTCCAAGTGCTAGTGGAACGTGTAGATCAGACAATCGAATTTCTCAGAATGGTGTCCAAAAGAGCAAATGGTTTTGCAGAATGGGCAGCTGATTTGAGAGTTAATTTTTTCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTGGGACATTTTGAGCGTTTTCATTTA

mRNA sequence

ATGAGGAGGTGTTAACTATACACCATTGTTAGTTTTATGTCAGGTGTAGCTCAAACAGTTTATACCACCAACTCATAATCTGCAAGAGGGTGGAGGATTTTTCATACGATCCTGAAGATTGTCAAGGAAAAAACGTCAAGCAGTATGCGCATGGAAATCTATAAGAAAGATAAAAGACAAAGGACATTACGAAGGAGTTACTAGTGGGTACGAGACATGGCAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGGAGAACGAACTCGAAAAAACTAAGAGTTTCTTAAAAAATCAAGATAAGTTAGAAAAGGATCTTGAAACTTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGCTTGAAAAATGAGAAGACAACATTACAAGCAACAGTGGGGTCGCAAGATGAATATATTAAAGATTTAGAAAATGGGAAGGAATATTTTCTTGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACGAGAAACACAAATAATGGATTTGGAAGCACAAAATCATTCTTTGCGTTAAACTGTTGATAGCCTACATCTGAAGATGGCCAAGCGCTCTAAAGAGTATGAGATACTGATAAATTATGTTGATTCCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTAAGAGGATACACAAGAATATGAGTCATTGAATACAGATTATGTGCAAATGAAGGTTGATTATGATCTGCAAACGAGAGATTTCCAAGTGCTAGTGGAACGTGTAGATCAGACAATCGAATTTCTCAGAATGGTGTCCAAAAGAGCAAATGGTTTTGCAGAATGGGCAGCTGATTTGAGAGTTAATTTTTTCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTGGGACATTTTGAGCGTTTTCATTTA

Coding sequence (CDS)

ATGAAGGTTGATTATGATCTGCAAACGAGAGATTTCCAAGTGCTAGTGGAACGTGTAGATCAGACAATCGAATTTCTCAGAATGGTGTCCAAAAGAGCAAATGGTTTTGCAGAATGGGCAGCTGATTTGAGAGTTAATTTTTTCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTGGGACATTTTGAGCGTTTTCATTTA

Protein sequence

MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSMQPHADDLNRFLKMICRELGHFERFHL
Homology
[Close]
BLAST of MELO3C012942.2 vs. NCBI nr
Match: XP_016900531.1 (PREDICTED: girdin-like [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 2.0e-31
Identity = 68/75 (90.67%), Postives = 72/75 (96.00%), Query Frame = 0 

Query: 1   MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSMQPHADDLNRF 60
           MKVDYDLQTRDFQVLVER+DQTI+FLRMVSKRAN FAEWAADLRVNFFS+Q HADDLNRF
Sbjct: 308 MKVDYDLQTRDFQVLVERIDQTIKFLRMVSKRANVFAEWAADLRVNFFSLQSHADDLNRF 367

Query: 61  LKMICRELGHFERFH 76
           LKMIC+ELGHF RFH
Sbjct: 368 LKMICKELGHFGRFH 382

[Close]
BLAST of MELO3C012942.2 vs. TrEMBL
Match: tr|A0A1S4DX26|A0A1S4DX26_CUCME (girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-31
Identity = 68/75 (90.67%), Postives = 72/75 (96.00%), Query Frame = 0 

Query: 1   MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSMQPHADDLNRF 60
           MKVDYDLQTRDFQVLVER+DQTI+FLRMVSKRAN FAEWAADLRVNFFS+Q HADDLNRF
Sbjct: 308 MKVDYDLQTRDFQVLVERIDQTIKFLRMVSKRANVFAEWAADLRVNFFSLQSHADDLNRF 367

Query: 61  LKMICRELGHFERFH 76
           LKMIC+ELGHF RFH
Sbjct: 368 LKMICKELGHFGRFH 382

The following BLAST results are available for this feature:
BLAST of MELO3C012942.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016900531.12.0e-3190.67PREDICTED: girdin-like [Cucumis melo][more]
BLAST of MELO3C012942.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C012942.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C012942.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DX26|A0A1S4DX26_CUCME1.3e-3190.67girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012942.2.1MELO3C012942.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C012942.2Cucumber (Gy14) v2cgybmedB178
MELO3C012942.2Cucumber (Gy14) v1cgymedB493
MELO3C012942.2Cucurbita maxima (Rimu)cmamedB261
MELO3C012942.2Cucurbita maxima (Rimu)cmamedB490
MELO3C012942.2Cucurbita moschata (Rifu)cmomedB245
MELO3C012942.2Cucurbita moschata (Rifu)cmomedB477
MELO3C012942.2Cucurbita pepo (Zucchini)cpemedB616
MELO3C012942.2Cucurbita pepo (Zucchini)cpemedB680
MELO3C012942.2Wild cucumber (PI 183967)cpimedB197
MELO3C012942.2Cucumber (Chinese Long) v2cumedB197
MELO3C012942.2Bottle gourd (USVL1VR-Ls)lsimedB456
MELO3C012942.2Watermelon (Charleston Gray)medwcgB338
MELO3C012942.2Watermelon (97103) v1medwmB361
MELO3C012942.2Silver-seed gourdcarmedB0128
MELO3C012942.2Silver-seed gourdcarmedB0209
MELO3C012942.2Cucumber (Chinese Long) v3cucmedB202
MELO3C012942.2Watermelon (97103) v2medwmbB332
MELO3C012942.2Wax gourdmedwgoB398