MELO3C012884 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C012884
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRho termination factor, putative
Locationchr4 : 13929690 .. 13929962 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCAGATGAGGAAACATATGATCTAGAGCATGAAGCTGATGAAATGGTGCCTGAACTTATTAATTTGTTAGGCGTGTCATCAGACGTCGATGACACGTTTGAGGATGATATTAAAGACACTGAGGAATTTTCAAAGCATGGTGAACATGAGAACTTAAACTCATGGAAACTTGCTAAACTAAGGGTGATTGCTAAATCTCGTAGTTTGAAAGGGTTTTCGAAGATGAAGAAGAGCAAGCTTATGCAATTGTTAAGCAAAGATCATTGA

mRNA sequence

ATGGAACCAGATGAGGAAACATATGATCTAGAGCATGAAGCTGATGAAATGGTGCCTGAACTTATTAATTTGTTAGGCGTGTCATCAGACGTCGATGACACGTTTGAGGATGATATTAAAGACACTGAGGAATTTTCAAAGCATGGTGAACATGAGAACTTAAACTCATGGAAACTTGCTAAACTAAGGGTGATTGCTAAATCTCGTAGTTTGAAAGGGTTTTCGAAGATGAAGAAGAGCAAGCTTATGCAATTGTTAAGCAAAGATCATTGA

Coding sequence (CDS)

ATGGAACCAGATGAGGAAACATATGATCTAGAGCATGAAGCTGATGAAATGGTGCCTGAACTTATTAATTTGTTAGGCGTGTCATCAGACGTCGATGACACGTTTGAGGATGATATTAAAGACACTGAGGAATTTTCAAAGCATGGTGAACATGAGAACTTAAACTCATGGAAACTTGCTAAACTAAGGGTGATTGCTAAATCTCGTAGTTTGAAAGGGTTTTCGAAGATGAAGAAGAGCAAGCTTATGCAATTGTTAAGCAAAGATCATTGA

Protein sequence

MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKDH*
Homology
[Close]
BLAST of MELO3C012884 vs. Swiss-Prot
Match: RHON1_ARATH (Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=RHON1 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.6e-09
Identity = 34/93 (36.56%), Postives = 59/93 (63.44%), Query Frame = 1 

Query: 1   MEPDEETYDLEHEADEMVPELIN----LLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNS 60
           ++P+  ++  E E D++  ++++    +L V SD D++ +D  +D++E  +    ++L+ 
Sbjct: 308 LKPESSSFYQEEEDDDVTFDVLSQDDGILDVLSDDDESLDDADEDSDEAEEEAV-KDLSE 367

Query: 61  WKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKD 90
            KL +LR IAKSR LKG SKMKK++L++LL  D
Sbjct: 368 LKLVELRGIAKSRGLKGLSKMKKAELVELLGSD 399

[Close]
BLAST of MELO3C012884 vs. TrEMBL
Match: A0A0A0L7X8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G384780 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.1e-31
Identity = 71/89 (79.78%), Postives = 81/89 (91.01%), Query Frame = 1 

Query: 1   MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHG--EHENLNSWK 60
           +EP+ ETYDLEHE DEM PEL+NLLGVSSDVDDTFEDD+KD EEF+KHG  EHE+LNS K
Sbjct: 319 LEPEAETYDLEHEGDEMEPELVNLLGVSSDVDDTFEDDVKDNEEFAKHGEQEHEDLNSLK 378

Query: 61  LAKLRVIAKSRSLKGFSKMKKSKLMQLLS 88
           LA+LR IAKSRSL+GFSKMKKS+L+QLLS
Sbjct: 379 LAELRAIAKSRSLRGFSKMKKSELVQLLS 407

[Close]
BLAST of MELO3C012884 vs. TrEMBL
Match: W9QWA9_9ROSA (SAP-like protein BP-73 OS=Morus notabilis GN=L484_001684 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-09
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 1 

Query: 2   EPDEETYD-LEHEAD-EMVPELINLLG--VSSDVDDTFEDDIKDTEEFSKHGEHENLNSW 61
           EP+ E ++ LE E + E  PEL+ LL   +SS  +   +DD  ++E+  +  EHE+L++W
Sbjct: 304 EPETEDHEELESELEVEPEPELVQLLEGELSSTEEAHIDDDDDESEDEQQLTEHEDLSAW 363

Query: 62  KLAKLRVIAKSRSLKGFSKMKKSKLMQLLS 88
           KL +LR +AKSR +KG+SK+KKS L+ LLS
Sbjct: 364 KLPELRALAKSRGVKGYSKVKKSDLVYLLS 393

[Close]
BLAST of MELO3C012884 vs. TrEMBL
Match: B9T1B2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0499370 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-08
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1 

Query: 2   EPDEETYDLEHEADEMVPELINLLGVSSD-VDDTFEDDIKDTEEFS---KHGEHENLNSW 61
           +P  ET + E E   + PE   L G + D + +    DI D  EFS   K  EHE+L+S 
Sbjct: 293 QPKLETQEPELEV-ALEPESSFLDGNAVDELSEEESSDIDDINEFSNQQKENEHEDLSSL 352

Query: 62  KLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKD 90
           KL +LR +AKSR LKGFSKMKK  L++LLS D
Sbjct: 353 KLPELRALAKSRGLKGFSKMKKGDLVELLSGD 383

[Close]
BLAST of MELO3C012884 vs. TrEMBL
Match: D7KG06_ARALL (ATP binding protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_887819 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.7e-08
Identity = 36/89 (40.45%), Postives = 59/89 (66.29%), Query Frame = 1 

Query: 1   MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLA 60
           ++PD  +   E E DE+  +   +L V SD D++ +D  +D++E  +    ++L+  KL 
Sbjct: 312 LKPDSSSLFQEEEDDEVTLDDDGILDVFSDDDESHDDADEDSDEAEEEAV-KDLSKLKLM 371

Query: 61  KLRVIAKSRSLKGFSKMKKSKLMQLLSKD 90
           +LR +AKSR LKGFSKMKK++L++LLS +
Sbjct: 372 ELRGLAKSRGLKGFSKMKKAELVELLSSN 399

[Close]
BLAST of MELO3C012884 vs. TrEMBL
Match: A0A067K3Y6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17682 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.5e-07
Identity = 34/87 (39.08%), Postives = 55/87 (63.22%), Query Frame = 1 

Query: 1   MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLA 60
           +EP+    +LE E +   P+  ++    S+ + +  D I +  E  +  EHE+L+S KL 
Sbjct: 302 LEPELPQLELEQELESSFPDT-DVFDELSEGESSDTDHIDEDSEKEQQIEHEDLSSLKLP 361

Query: 61  KLRVIAKSRSLKGFSKMKKSKLMQLLS 88
           +LR +AKSR +KG+SKMKK +L++LLS
Sbjct: 362 ELRALAKSRGVKGYSKMKKGELVELLS 387

[Close]
BLAST of MELO3C012884 vs. TAIR10
Match: AT1G06190.1 (AT1G06190.1 Rho termination factor)

HSP 1 Score: 60.8 bits (146), Expect = 4.9e-10
Identity = 34/93 (36.56%), Postives = 59/93 (63.44%), Query Frame = 1 

Query: 1   MEPDEETYDLEHEADEMVPELIN----LLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNS 60
           ++P+  ++  E E D++  ++++    +L V SD D++ +D  +D++E  +    ++L+ 
Sbjct: 308 LKPESSSFYQEEEDDDVTFDVLSQDDGILDVLSDDDESLDDADEDSDEAEEEAV-KDLSE 367

Query: 61  WKLAKLRVIAKSRSLKGFSKMKKSKLMQLLSKD 90
            KL +LR IAKSR LKG SKMKK++L++LL  D
Sbjct: 368 LKLVELRGIAKSRGLKGLSKMKKAELVELLGSD 399

[Close]
BLAST of MELO3C012884 vs. NCBI nr
Match: gi|659093204|ref|XP_008447422.1| (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X5 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 76/90 (84.44%), Postives = 83/90 (92.22%), Query Frame = 1 

Query: 1   MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLA 60
           MEP+ ETYDLEHEADEM PEL+NLLGVSSD+DDTFEDDIKD EEFSKHGEHENLNS KLA
Sbjct: 322 MEPEAETYDLEHEADEMEPELVNLLGVSSDIDDTFEDDIKDNEEFSKHGEHENLNSLKLA 381

Query: 61  KLRVIAKSRSLKGFSKMKKSKLMQLLSKDH 91
           +LR IAKSRSL+GFSKMKKS+L+QLLS  H
Sbjct: 382 ELRAIAKSRSLRGFSKMKKSELVQLLSNSH 411

[Close]
BLAST of MELO3C012884 vs. NCBI nr
Match: gi|659093202|ref|XP_008447421.1| (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X4 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 76/90 (84.44%), Postives = 83/90 (92.22%), Query Frame = 1 

Query: 1   MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLA 60
           MEP+ ETYDLEHEADEM PEL+NLLGVSSD+DDTFEDDIKD EEFSKHGEHENLNS KLA
Sbjct: 324 MEPEAETYDLEHEADEMEPELVNLLGVSSDIDDTFEDDIKDNEEFSKHGEHENLNSLKLA 383

Query: 61  KLRVIAKSRSLKGFSKMKKSKLMQLLSKDH 91
           +LR IAKSRSL+GFSKMKKS+L+QLLS  H
Sbjct: 384 ELRAIAKSRSLRGFSKMKKSELVQLLSNSH 413

[Close]
BLAST of MELO3C012884 vs. NCBI nr
Match: gi|659093200|ref|XP_008447419.1| (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X3 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 76/90 (84.44%), Postives = 83/90 (92.22%), Query Frame = 1 

Query: 1   MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLA 60
           MEP+ ETYDLEHEADEM PEL+NLLGVSSD+DDTFEDDIKD EEFSKHGEHENLNS KLA
Sbjct: 333 MEPEAETYDLEHEADEMEPELVNLLGVSSDIDDTFEDDIKDNEEFSKHGEHENLNSLKLA 392

Query: 61  KLRVIAKSRSLKGFSKMKKSKLMQLLSKDH 91
           +LR IAKSRSL+GFSKMKKS+L+QLLS  H
Sbjct: 393 ELRAIAKSRSLRGFSKMKKSELVQLLSNSH 422

[Close]
BLAST of MELO3C012884 vs. NCBI nr
Match: gi|659093198|ref|XP_008447418.1| (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 76/90 (84.44%), Postives = 83/90 (92.22%), Query Frame = 1 

Query: 1   MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLA 60
           MEP+ ETYDLEHEADEM PEL+NLLGVSSD+DDTFEDDIKD EEFSKHGEHENLNS KLA
Sbjct: 335 MEPEAETYDLEHEADEMEPELVNLLGVSSDIDDTFEDDIKDNEEFSKHGEHENLNSLKLA 394

Query: 61  KLRVIAKSRSLKGFSKMKKSKLMQLLSKDH 91
           +LR IAKSRSL+GFSKMKKS+L+QLLS  H
Sbjct: 395 ELRAIAKSRSLRGFSKMKKSELVQLLSNSH 424

[Close]
BLAST of MELO3C012884 vs. NCBI nr
Match: gi|659093196|ref|XP_008447417.1| (PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 76/90 (84.44%), Postives = 83/90 (92.22%), Query Frame = 1 

Query: 1   MEPDEETYDLEHEADEMVPELINLLGVSSDVDDTFEDDIKDTEEFSKHGEHENLNSWKLA 60
           MEP+ ETYDLEHEADEM PEL+NLLGVSSD+DDTFEDDIKD EEFSKHGEHENLNS KLA
Sbjct: 339 MEPEAETYDLEHEADEMEPELVNLLGVSSDIDDTFEDDIKDNEEFSKHGEHENLNSLKLA 398

Query: 61  KLRVIAKSRSLKGFSKMKKSKLMQLLSKDH 91
           +LR IAKSRSL+GFSKMKKS+L+QLLS  H
Sbjct: 399 ELRAIAKSRSLRGFSKMKKSELVQLLSNSH 428

The following BLAST results are available for this feature:
BLAST of MELO3C012884 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RHON1_ARATH8.6e-0936.56Rho-N domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=RHON... [more]
BLAST of MELO3C012884 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7X8_CUCSA1.1e-3179.78Uncharacterized protein OS=Cucumis sativus GN=Csa_3G384780 PE=4 SV=1[more]
W9QWA9_9ROSA2.1e-0945.56SAP-like protein BP-73 OS=Morus notabilis GN=L484_001684 PE=4 SV=1[more]
B9T1B2_RICCO3.9e-0847.83Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0499370 PE=4 SV=1[more]
D7KG06_ARALL8.7e-0840.45ATP binding protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_887819 PE=... [more]
A0A067K3Y6_JATCU2.5e-0739.08Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17682 PE=4 SV=1[more]
BLAST of MELO3C012884 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G06190.14.9e-1036.56 Rho termination factor[more]
BLAST of MELO3C012884 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659093204|ref|XP_008447422.1|1.1e-3584.44PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X5 [Cucumis ... [more]
gi|659093202|ref|XP_008447421.1|1.1e-3584.44PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X4 [Cucumis ... [more]
gi|659093200|ref|XP_008447419.1|1.1e-3584.44PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X3 [Cucumis ... [more]
gi|659093198|ref|XP_008447418.1|1.1e-3584.44PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X2 [Cucumis ... [more]
gi|659093196|ref|XP_008447417.1|1.1e-3584.44PREDICTED: rho-N domain-containing protein 1, chloroplastic isoform X1 [Cucumis ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006353 DNA-templated transcription, termination
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012884T1MELO3C012884T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 51..88
score: 5.