MELO3C012882 (gene) Melon (DHL92) v3.5.1

NameMELO3C012882
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCytoplasmic tRNA 2-thiolation protein 1
Locationchr4 : 13917458 .. 13917831 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTTTTTCTCCTGAAGGCCCTTGATAGAGTTGTTGCATTGTTGAAAGTAGTCAGGCTAGCCACGGGGCACAATGCAATTGATATGGTTGGAACAATTCTATTAAATATATTACGAGGTGATATTGCAAGGTATTTTAATAGTAAGACTTTTTTTTTCAATTACTTTATCCCTCATTTGGGTTGTATTAGACTAAAGTGATGCTTTGTATTTGTAGATTGAGTAGATGTACTAAATTAATTACCGATGAAGATGGACCAATTCCAAGATGCAAACCTTTCAAGTACACATATGGAAAGAAGATAGTAATATATTTTATATTTTGGTCTCATAGCTCTAGAGCAAGTCTTGCATCATGTAGCTTATTTTGA

mRNA sequence

ATGGAATTTTTTCTCCTGAAGGCCCTTGATAGAGTTGTTGCATTGTTGAAAGTAGTCAGGCTAGCCACGGGGCACAATGCAATTGATATGGTTGGAACAATTCTATTAAATATATTACGAGGTGATATTGCAAGATTGAGTAGATGTACTAAATTAATTACCGATGAAGATGGACCAATTCCAAGATGCAAACCTTTCAAGTACACATATGGAAAGAAGATAGTAATATATTTTATATTTTGGTCTCATAGCTCTAGAGCAAGTCTTGCATCATGTAGCTTATTTTGA

Coding sequence (CDS)

ATGGAATTTTTTCTCCTGAAGGCCCTTGATAGAGTTGTTGCATTGTTGAAAGTAGTCAGGCTAGCCACGGGGCACAATGCAATTGATATGGTTGGAACAATTCTATTAAATATATTACGAGGTGATATTGCAAGATTGAGTAGATGTACTAAATTAATTACCGATGAAGATGGACCAATTCCAAGATGCAAACCTTTCAAGTACACATATGGAAAGAAGATAGTAATATATTTTATATTTTGGTCTCATAGCTCTAGAGCAAGTCTTGCATCATGTAGCTTATTTTGA

Protein sequence

MEFFLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFKYTYGKKIVIYFIFWSHSSRASLASCSLF*
BLAST of MELO3C012882 vs. Swiss-Prot
Match: CTU1_ARATH (Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabidopsis thaliana GN=NCS6 PE=2 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-24
Identity = 55/77 (71.43%), Postives = 60/77 (77.92%), Query Frame = 1

Query: 4   FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRC 63
           F  +ALDR  ALLKV +L TGHNA D+  T+LLNILRGDIARLSRCT + T EDGPIPRC
Sbjct: 155 FRRQALDRGAALLKVEKLVTGHNADDIAETVLLNILRGDIARLSRCTSITTGEDGPIPRC 214

Query: 64  KPFKYTYGKKIVIYFIF 81
           KPFKYTY K+IV+Y  F
Sbjct: 215 KPFKYTYEKEIVMYAYF 231

BLAST of MELO3C012882 vs. Swiss-Prot
Match: CTU1_ORYSJ (Cytoplasmic tRNA 2-thiolation protein 1 OS=Oryza sativa subsp. japonica GN=NCS6 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-23
Identity = 54/77 (70.13%), Postives = 60/77 (77.92%), Query Frame = 1

Query: 4   FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRC 63
           F  +ALDR  ALLKV ++ TGHNA D+  T+LLNILRGDIARLSRCT + T EDGPIPRC
Sbjct: 161 FRRQALDRGAALLKVDKIVTGHNADDIAETVLLNILRGDIARLSRCTFITTGEDGPIPRC 220

Query: 64  KPFKYTYGKKIVIYFIF 81
           KPFKYTY K+IV+Y  F
Sbjct: 221 KPFKYTYEKEIVMYAYF 237

BLAST of MELO3C012882 vs. Swiss-Prot
Match: CTU1_XENLA (Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus laevis GN=ctu1 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-18
Identity = 43/77 (55.84%), Postives = 53/77 (68.83%), Query Frame = 1

Query: 4   FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRC 63
           F  +ALDR   +L + ++ TGHNA D+  T+L+N LRGDIARL RCT + T  +G IPRC
Sbjct: 146 FRRQALDRGAMMLGINKICTGHNADDIAETVLMNFLRGDIARLRRCTAITTGSEGAIPRC 205

Query: 64  KPFKYTYGKKIVIYFIF 81
           KP KYTY K+IV+Y  F
Sbjct: 206 KPLKYTYEKEIVLYAYF 222

BLAST of MELO3C012882 vs. Swiss-Prot
Match: CTU1_XENTR (Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus tropicalis GN=ctu1 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.8e-18
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 1

Query: 4   FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRC 63
           F  +ALDR   +L V ++ TGHNA D+  T+L+N LRGDIARL RCT + T  +G IPRC
Sbjct: 146 FRRQALDRGAMMLGVNKICTGHNADDIAETVLMNFLRGDIARLRRCTSITTGSEGAIPRC 205

Query: 64  KPFKYTYGKKIVIYFIF 81
           KP KY Y K+IV+Y  F
Sbjct: 206 KPLKYAYEKEIVLYAYF 222

BLAST of MELO3C012882 vs. Swiss-Prot
Match: CTU1_DICDI (Cytoplasmic tRNA 2-thiolation protein 1 OS=Dictyostelium discoideum GN=ctu1 PE=2 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 4.8e-18
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 1

Query: 4   FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRC 63
           F  +ALDR   +LK  ++ TGHNA D+  T+L+N+LRGDI RL RC  +IT  +G +PR 
Sbjct: 154 FRRQALDRGAVMLKANKIVTGHNADDIAETVLMNLLRGDIPRLQRCVNIITGSEGALPRS 213

Query: 64  KPFKYTYGKKIVIYFIF 81
           KPFKYTY K+IV+Y  F
Sbjct: 214 KPFKYTYQKEIVMYAYF 230

BLAST of MELO3C012882 vs. TrEMBL
Match: A0A103XR73_CYNCS (Rossmann-like alpha/beta/alpha sandwich fold (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_002507 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.1e-24
Identity = 60/79 (75.95%), Postives = 66/79 (83.54%), Query Frame = 1

Query: 4   FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRC 63
           F  +ALDR  ALLKV +LATGHNA D+  T+LLNILRGDIARLSRCT +IT EDGPIPRC
Sbjct: 215 FRRQALDRGAALLKVDKLATGHNADDIAETVLLNILRGDIARLSRCTSIITGEDGPIPRC 274

Query: 64  KPFKYTYGKKIVIY-FIFW 82
           KPFKYTY K+IVIY  IFW
Sbjct: 275 KPFKYTYEKEIVIYPSIFW 293

BLAST of MELO3C012882 vs. TrEMBL
Match: A0A0A0LKF0_CUCSA (Cytoplasmic tRNA 2-thiolation protein 1 OS=Cucumis sativus GN=NCS6 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-23
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 1

Query: 4   FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRC 63
           F  +ALDR  ALLKV +LATGHNA DM  T+LLNILRGDIARLSRCT +IT EDGPIPRC
Sbjct: 157 FRRQALDRGAALLKVDKLATGHNADDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRC 216

Query: 64  KPFKYTYGKKIVIYFIF 81
           KPFKYTY K+IV+Y  F
Sbjct: 217 KPFKYTYEKEIVMYAYF 233

BLAST of MELO3C012882 vs. TrEMBL
Match: A0A0D3D124_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-23
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = 1

Query: 4   FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRC 63
           F +KALDR  ALLKV +L TGHNA D+  T+LLNILRGDIARLSRCT + T EDGPIPRC
Sbjct: 132 FFVKALDRGAALLKVDKLVTGHNADDIAETVLLNILRGDIARLSRCTSITTGEDGPIPRC 191

Query: 64  KPFKYTYGKKIVIY 78
           KPFKYTY K+IVIY
Sbjct: 192 KPFKYTYEKEIVIY 205

BLAST of MELO3C012882 vs. TrEMBL
Match: E0CQT4_VITVI (Cytoplasmic tRNA 2-thiolation protein 1 OS=Vitis vinifera GN=NCS6 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.5e-23
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 1

Query: 4   FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRC 63
           F  +ALDR  A+LKV +LATGHNA D+  T+LLNILRGDIARLSRCT +IT EDGPIPRC
Sbjct: 157 FRRQALDRGAAMLKVDKLATGHNADDIAETVLLNILRGDIARLSRCTSIITGEDGPIPRC 216

Query: 64  KPFKYTYGKKIVIY 78
           KPFKYTY K+IVIY
Sbjct: 217 KPFKYTYEKEIVIY 230

BLAST of MELO3C012882 vs. TrEMBL
Match: A0A0D2TSG6_GOSRA (Cytoplasmic tRNA 2-thiolation protein 1 OS=Gossypium raimondii GN=NCS6 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.9e-23
Identity = 56/77 (72.73%), Postives = 64/77 (83.12%), Query Frame = 1

Query: 4   FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRC 63
           F  +ALDR  ALLKV ++ATGHNA D+  T+LLNILRGDIARLSRCT +IT EDGPIPRC
Sbjct: 156 FRRQALDRGAALLKVDKVATGHNADDIAETVLLNILRGDIARLSRCTSIITGEDGPIPRC 215

Query: 64  KPFKYTYGKKIVIYFIF 81
           KPFKYTY K+IV+Y  F
Sbjct: 216 KPFKYTYEKEIVMYAYF 232

BLAST of MELO3C012882 vs. TAIR10
Match: AT1G76170.1 (AT1G76170.1 2-thiocytidine tRNA biosynthesis protein, TtcA)

HSP 1 Score: 111.3 bits (277), Expect = 3.3e-25
Identity = 54/77 (70.13%), Postives = 60/77 (77.92%), Query Frame = 1

Query: 4   FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRC 63
           F  +ALDR  ALLKV +L TGHNA D+  T++LNILRGDIARLSRCT + T EDGPIPRC
Sbjct: 133 FRRQALDRGAALLKVDKLVTGHNADDIAETVVLNILRGDIARLSRCTSITTGEDGPIPRC 192

Query: 64  KPFKYTYGKKIVIYFIF 81
           KPFKYTY K+IV+Y  F
Sbjct: 193 KPFKYTYEKEIVMYAYF 209

BLAST of MELO3C012882 vs. TAIR10
Match: AT2G44270.2 (AT2G44270.2 repressor of lrx1)

HSP 1 Score: 100.5 bits (249), Expect = 5.9e-22
Identity = 48/67 (71.64%), Postives = 52/67 (77.61%), Query Frame = 1

Query: 4   FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRC 63
           F  +ALDR  ALLKV +L TGHNA D+  T+LLNILRGDIARLSRCT + T EDGPIPRC
Sbjct: 165 FRRQALDRGAALLKVEKLVTGHNADDIAETVLLNILRGDIARLSRCTSITTGEDGPIPRC 224

Query: 64  KPFKYTY 71
           KPF +TY
Sbjct: 225 KPFNFTY 231

BLAST of MELO3C012882 vs. NCBI nr
Match: gi|659093684|ref|XP_008447661.1| (PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 9.1e-25
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

Query: 8   ALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFK 67
           ALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFK
Sbjct: 80  ALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRCKPFK 139

BLAST of MELO3C012882 vs. NCBI nr
Match: gi|976908178|gb|KVH95408.1| (Rossmann-like alpha/beta/alpha sandwich fold, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 118.6 bits (296), Expect = 5.9e-24
Identity = 60/79 (75.95%), Postives = 66/79 (83.54%), Query Frame = 1

Query: 4   FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRC 63
           F  +ALDR  ALLKV +LATGHNA D+  T+LLNILRGDIARLSRCT +IT EDGPIPRC
Sbjct: 215 FRRQALDRGAALLKVDKLATGHNADDIAETVLLNILRGDIARLSRCTSIITGEDGPIPRC 274

Query: 64  KPFKYTYGKKIVIY-FIFW 82
           KPFKYTY K+IVIY  IFW
Sbjct: 275 KPFKYTYEKEIVIYPSIFW 293

BLAST of MELO3C012882 vs. NCBI nr
Match: gi|778670437|ref|XP_011649473.1| (PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-23
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 1

Query: 4   FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRC 63
           F  +ALDR  ALLKV +LATGHNA DM  T+LLNILRGDIARLSRCT +IT EDGPIPRC
Sbjct: 157 FRRQALDRGAALLKVDKLATGHNADDMAETVLLNILRGDIARLSRCTAIITGEDGPIPRC 216

Query: 64  KPFKYTYGKKIVIYFIF 81
           KPFKYTY K+IV+Y  F
Sbjct: 217 KPFKYTYEKEIVMYAYF 233

BLAST of MELO3C012882 vs. NCBI nr
Match: gi|764540666|ref|XP_004291313.2| (PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 115.5 bits (288), Expect = 5.0e-23
Identity = 56/77 (72.73%), Postives = 64/77 (83.12%), Query Frame = 1

Query: 4   FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRC 63
           F  +ALDR  ALLKV +LATGHNA D+  T+LLNILRGDIARLSRCT ++T EDGPIPRC
Sbjct: 184 FRRQALDRGAALLKVDKLATGHNADDIAETVLLNILRGDIARLSRCTSIVTGEDGPIPRC 243

Query: 64  KPFKYTYGKKIVIYFIF 81
           KPFKYTY K+IV+Y  F
Sbjct: 244 KPFKYTYEKEIVMYAYF 260

BLAST of MELO3C012882 vs. NCBI nr
Match: gi|657970684|ref|XP_008377106.1| (PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Malus domestica])

HSP 1 Score: 115.5 bits (288), Expect = 5.0e-23
Identity = 56/77 (72.73%), Postives = 64/77 (83.12%), Query Frame = 1

Query: 4   FLLKALDRVVALLKVVRLATGHNAIDMVGTILLNILRGDIARLSRCTKLITDEDGPIPRC 63
           F  +ALDR  ALLKV +LATGHNA D+  T+LLNILRGDIARLSRCT ++T EDGPIPRC
Sbjct: 158 FRRQALDRGAALLKVDKLATGHNADDIAETVLLNILRGDIARLSRCTSIVTGEDGPIPRC 217

Query: 64  KPFKYTYGKKIVIYFIF 81
           KPFKYTY K+IV+Y  F
Sbjct: 218 KPFKYTYEKEIVMYAYF 234

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CTU1_ARATH2.0e-2471.43Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabidopsis thaliana GN=NCS6 PE=2 SV=... [more]
CTU1_ORYSJ1.0e-2370.13Cytoplasmic tRNA 2-thiolation protein 1 OS=Oryza sativa subsp. japonica GN=NCS6 ... [more]
CTU1_XENLA2.2e-1855.84Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus laevis GN=ctu1 PE=2 SV=1[more]
CTU1_XENTR4.8e-1855.84Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus tropicalis GN=ctu1 PE=2 SV=1[more]
CTU1_DICDI4.8e-1854.55Cytoplasmic tRNA 2-thiolation protein 1 OS=Dictyostelium discoideum GN=ctu1 PE=2... [more]
Match NameE-valueIdentityDescription
A0A103XR73_CYNCS4.1e-2475.95Rossmann-like alpha/beta/alpha sandwich fold (Fragment) OS=Cynara cardunculus va... [more]
A0A0A0LKF0_CUCSA1.2e-2375.32Cytoplasmic tRNA 2-thiolation protein 1 OS=Cucumis sativus GN=NCS6 PE=3 SV=1[more]
A0A0D3D124_BRAOL2.7e-2375.68Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
E0CQT4_VITVI4.5e-2375.68Cytoplasmic tRNA 2-thiolation protein 1 OS=Vitis vinifera GN=NCS6 PE=3 SV=1[more]
A0A0D2TSG6_GOSRA5.9e-2372.73Cytoplasmic tRNA 2-thiolation protein 1 OS=Gossypium raimondii GN=NCS6 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT1G76170.13.3e-2570.13 2-thiocytidine tRNA biosynthesis protein, TtcA[more]
AT2G44270.25.9e-2271.64 repressor of lrx1[more]
Match NameE-valueIdentityDescription
gi|659093684|ref|XP_008447661.1|9.1e-25100.00PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Cucumis melo][more]
gi|976908178|gb|KVH95408.1|5.9e-2475.95Rossmann-like alpha/beta/alpha sandwich fold, partial [Cynara cardunculus var. s... [more]
gi|778670437|ref|XP_011649473.1|1.7e-2375.32PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Cucumis sativus][more]
gi|764540666|ref|XP_004291313.2|5.0e-2372.73PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca][more]
gi|657970684|ref|XP_008377106.1|5.0e-2372.73PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032447 protein urmylation
biological_process GO:0034227 tRNA thio-modification
biological_process GO:0002098 tRNA wobble uridine modification
cellular_component GO:0005737 cytoplasm
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0000049 tRNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012882T1MELO3C012882T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11807ATPASES OF THE PP SUPERFAMILY-RELATEDcoord: 8..80
score: 2.4
NoneNo IPR availablePANTHERPTHR11807:SF12CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 1coord: 8..80
score: 2.4
NoneNo IPR availableunknownSSF52402Adenine nucleotide alpha hydrolases-likecoord: 6..80
score: 2.