MELO3C012880.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012880.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3
Location	chr04 : 13893235 .. 13893999 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAATACTCTCTGAATTTGAATCCCTAAACAACAACAACAACCCACCATTTGGAGTAGTAGTTACTAACAACACACTTCAAAACCTAGTGGTTGGTTCATCGTCTTCATCTTCGTCGTCATCGTCATCTAGTCGATACGAGAATCAAAAGCGTAGGGATTGGAACACATTTTGTCAATACCTTAAAAATCATAGACCCCCGCTTGCTCTATCAAGGTGTAGTGGAGCTCACGTTCTTGAATTCCTAAGATATTTAGATCAATTTGGTAAAACAAAAGTTCATACTCCAATTTGTCCATTTTATGGTCATCCTAACCCACCTGCCCCTTGCCCTTGTCCTTTAAGACAAGCTTGGGGCAGCCTTGATGCTCTTATTGGGAGACTAAGGGCAGCTTTTGAAGAGAATGGTGGAATGCCCGAAGCTAACCCTTTTGGTGCCCGAGCTGTACGGCTTTATCTACGAGAGGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGTTATGAGAAGAAGAAAAGAAAGCGTCCTCAACAACAACAAATTGCTCAATCAAGTAATGGAAATTGAATAATTTTCAACTTCTTTCATTTTTATTTTTCTTTTTCTTTTAATTAATGGTCTTCTTAATTATGATTGCTATTATCATGATCTTTATCTTCATCTTGCTTTTTTCTTTTCTTTCTTTTTTTTTTTCCTTTAATCAATTCTAGGGTTAGTGTTTAAATTTCCCTAATCTAGAGGGAAAATATTATGGTTTGA

mRNA sequence

ATGGATTCAATACTCTCTGAATTTGAATCCCTAAACAACAACAACAACCCACCATTTGGAGTAGTAGTTACTAACAACACACTTCAAAACCTAGTGGTTGGTTCATCGTCTTCATCTTCGTCGTCATCGTCATCTAGTCGATACGAGAATCAAAAGCGTAGGGATTGGAACACATTTTGTCAATACCTTAAAAATCATAGACCCCCGCTTGCTCTATCAAGGTGTAGTGGAGCTCACGTTCTTGAATTCCTAAGATATTTAGATCAATTTGGTAAAACAAAAGTTCATACTCCAATTTGTCCATTTTATGGTCATCCTAACCCACCTGCCCCTTGCCCTTGTCCTTTAAGACAAGCTTGGGGCAGCCTTGATGCTCTTATTGGGAGACTAAGGGCAGCTTTTGAAGAGAATGGTGGAATGCCCGAAGCTAACCCTTTTGGTGCCCGAGCTGTACGGCTTTATCTACGAGAGGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGTTATGAGAAGAAGAAAAGAAAGCGTCCTCAACAACAACAAATTGCTCAATCAAGTAATGGAAATTGAATAATTTTCAACTTCTTTCATTTTTATTTTTCTTTTTCTTTTAATTAATGGTCTTCTTAATTATGATTGCTATTATCATGATCTTTATCTTCATCTTGCTTTTTTCTTTTCTTTCTTTTTTTTTTTCCTTTAATCAATTCTAGGGTTAGTGTTTAAATTTCCCTAATCTAGAGGGAAAATATTATGGTTTGA

Coding sequence (CDS)

ATGGATTCAATACTCTCTGAATTTGAATCCCTAAACAACAACAACAACCCACCATTTGGAGTAGTAGTTACTAACAACACACTTCAAAACCTAGTGGTTGGTTCATCGTCTTCATCTTCGTCGTCATCGTCATCTAGTCGATACGAGAATCAAAAGCGTAGGGATTGGAACACATTTTGTCAATACCTTAAAAATCATAGACCCCCGCTTGCTCTATCAAGGTGTAGTGGAGCTCACGTTCTTGAATTCCTAAGATATTTAGATCAATTTGGTAAAACAAAAGTTCATACTCCAATTTGTCCATTTTATGGTCATCCTAACCCACCTGCCCCTTGCCCTTGTCCTTTAAGACAAGCTTGGGGCAGCCTTGATGCTCTTATTGGGAGACTAAGGGCAGCTTTTGAAGAGAATGGTGGAATGCCCGAAGCTAACCCTTTTGGTGCCCGAGCTGTACGGCTTTATCTACGAGAGGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGTTATGAGAAGAAGAAAAGAAAGCGTCCTCAACAACAACAAATTGCTCAATCAAGTAATGGAAATTGA

Protein sequence

MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQIAQSSNGN

Homology

[Close]

BLAST of MELO3C012880.2 vs. NCBI nr
Match: KGN57902.1 (hypothetical protein Csa_3G383780 [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 2.2e-66
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60
           MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC
Sbjct: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX 180

Query: 181 XQIAQSSNGN 191
           XQIAQSSNGN
Sbjct: 181 XQIAQSSNGN 190

[Close]

BLAST of MELO3C012880.2 vs. NCBI nr
Match: XP_008447416.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo])

HSP 1 Score: 261.5 bits (667), Expect = 2.2e-66
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60
           MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC
Sbjct: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX 180

Query: 181 XQIAQSSNGN 191
           XQIAQSSNGN
Sbjct: 181 XQIAQSSNGN 190

[Close]

BLAST of MELO3C012880.2 vs. NCBI nr
Match: XP_011651439.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 2.0e-64
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60
           MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC
Sbjct: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX 180

Query: 181 XQIAQSS 188
           XQIAQSS
Sbjct: 181 XQIAQSS 187

[Close]

BLAST of MELO3C012880.2 vs. NCBI nr
Match: XP_004152052.2 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 2.2e-63
Identity = 185/186 (99.46%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60
           MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC
Sbjct: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX 180

Query: 181 XQIAQS 187
           X IAQS
Sbjct: 181 XXIAQS 186

[Close]

BLAST of MELO3C012880.2 vs. NCBI nr
Match: XP_022930979.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata])

HSP 1 Score: 240.0 bits (611), Expect = 6.7e-60
Identity = 119/121 (98.35%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX
Sbjct: 49  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 108

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEK 172
           XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARA+RLYLREVRD+QSKARGISYEK
Sbjct: 109 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEK 168

Query: 173 K 174
           K
Sbjct: 169 K 169

[Close]

BLAST of MELO3C012880.2 vs. TAIR10
Match: AT3G23290.2 (Protein of unknown function (DUF640))

HSP 1 Score: 217.6 bits (553), Expect = 6.5e-57
Identity = 101/119 (84.87%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+GHPN     
Sbjct: 54  RRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPC 113

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYE 172
              LRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYE
Sbjct: 114 ACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYE 172

[Close]

BLAST of MELO3C012880.2 vs. TAIR10
Match: AT2G31160.1 (Protein of unknown function (DUF640))

HSP 1 Score: 216.1 bits (549), Expect = 1.9e-56
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT IC FYGHP XXXXX
Sbjct: 60  RRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPXXXXXX 119

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYE 172
           XXXLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRD+QSKARG+SYE
Sbjct: 120 XXXLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYE 178

[Close]

BLAST of MELO3C012880.2 vs. TAIR10
Match: AT5G28490.1 (Protein of unknown function (DUF640))

HSP 1 Score: 206.1 bits (523), Expect = 2.0e-53
Identity = 100/120 (83.33%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTFCQYL+NHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH   C F+G PN   XX
Sbjct: 31  RRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNPPAXX 90

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEK 172
           XXXLRQAWGSLDALIGRLRAA+EENGG PEANPFG+RAVRL+LREVRD Q+KARG+SYEK
Sbjct: 91  XXXLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEK 150

[Close]

BLAST of MELO3C012880.2 vs. TAIR10
Match: AT1G07090.1 (Protein of unknown function (DUF640))

HSP 1 Score: 202.6 bits (514), Expect = 2.2e-52
Identity = 91/121 (75.21%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYLKNH+PPLALSRCSGAHV+EFL+YLDQFGKTKVH   CP++GH       
Sbjct: 37  RRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGHQQPPSPC 96

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEK 172
              L+QAWGSLDALIGRLRAA+EENGG P++NPF ARAVR+YLREVR+ Q+KARGI YEK
Sbjct: 97  SCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKARGIPYEK 156

Query: 173 K 174
           K
Sbjct: 157 K 157

[Close]

BLAST of MELO3C012880.2 vs. TAIR10
Match: AT3G04510.1 (Protein of unknown function (DUF640))

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-51
Identity = 94/121 (77.69%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTFCQYL+NH PPL+L+ CSGAHVL+FLRYLDQFGKTKVH   C F+G PN   XX
Sbjct: 39  RRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAXX 98

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEK 172
           XXXLRQAWGSLDALIGRLRAA+EENGG PE +PFG+R+VR++LREVRD Q+K+RG+SYEK
Sbjct: 99  XXXLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEK 158

Query: 173 K 174
           K
Sbjct: 159 K 159

[Close]

BLAST of MELO3C012880.2 vs. Swiss-Prot
Match: sp|Q9LW68|LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-55
Identity = 101/119 (84.87%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+GHPN     
Sbjct: 54  RRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPC 113

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYE 172
              LRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYE
Sbjct: 114 ACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYE 172

[Close]

BLAST of MELO3C012880.2 vs. Swiss-Prot
Match: sp|A2XAV5|G1L6_ORYSI (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.5e-55
Identity = 106/119 (89.08%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYL+NHRPPL+LSRCSGAHVLEFL+Y+DQFGKTKVHTP+CPFYGHPNXXXXX
Sbjct: 86  RRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHPNXXXXX 145

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYE 172
           XXXLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAVRLYLREVR+ Q++ARGISYE
Sbjct: 146 XXXLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGISYE 204

[Close]

BLAST of MELO3C012880.2 vs. Swiss-Prot
Match: sp|Q6K5X1|G1L6_ORYSJ (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.5e-55
Identity = 106/119 (89.08%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYL+NHRPPL+LSRCSGAHVLEFL+Y+DQFGKTKVHTP+CPFYGHPNXXXXX
Sbjct: 86  RRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYGHPNXXXXX 145

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYE 172
           XXXLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAVRLYLREVR+ Q++ARGISYE
Sbjct: 146 XXXLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGISYE 204

[Close]

BLAST of MELO3C012880.2 vs. Swiss-Prot
Match: sp|O82268|LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.4e-55
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT IC FYGHP XXXXX
Sbjct: 60  RRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPXXXXXX 119

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYE 172
           XXXLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRD+QSKARG+SYE
Sbjct: 120 XXXLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYE 178

[Close]

BLAST of MELO3C012880.2 vs. Swiss-Prot
Match: sp|Q7XDD0|G1L5_ORYSJ (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 9.3e-53
Identity = 101/119 (84.87%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYL+NHRPPL+L+RCSGAHVLEFLRYLDQFGKTKVH P CPF+GHP  XXXX
Sbjct: 46  RRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGKTKVHAPACPFFGHPAPXXXX 105

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYE 172
           XXXLRQAWGSLDAL+GRLRAA+EENGG PE NPFGARAVRLYLREVR+ Q++ARG+SYE
Sbjct: 106 XXXLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARARGVSYE 164

[Close]

BLAST of MELO3C012880.2 vs. TrEMBL
Match: tr|A0A1S3BHE8|A0A1S3BHE8_CUCME (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC103489869 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.4e-66
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60
           MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC
Sbjct: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX 180

Query: 181 XQIAQSSNGN 191
           XQIAQSSNGN
Sbjct: 181 XQIAQSSNGN 190

[Close]

BLAST of MELO3C012880.2 vs. TrEMBL
Match: tr|A0A0A0LB62|A0A0A0LB62_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G383780 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.4e-66
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60
           MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC
Sbjct: 1   MDSILSEFESLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXXXXXLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKXXXXXXX 180

Query: 181 XQIAQSSNGN 191
           XQIAQSSNGN
Sbjct: 181 XQIAQSSNGN 190

[Close]

BLAST of MELO3C012880.2 vs. TrEMBL
Match: tr|A0A2I4F639|A0A2I4F639_9ROSI (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Juglans regia OX=51240 GN=LOC108995899 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.2e-58
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX
Sbjct: 49  RRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 108

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEK 172
           XXXLRQAWGSLDALIGRLRAAFEENGG PEANPFGARAVRLYLREVRDLQSKARGISYEK
Sbjct: 109 XXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEK 168

Query: 173 K 174
           K
Sbjct: 169 K 169

[Close]

BLAST of MELO3C012880.2 vs. TrEMBL
Match: tr|A0A061DNN8|A0A061DNN8_THECC (IQ motif and SEC7 domain-containing protein 2 OS=Theobroma cacao OX=3641 GN=TCM_004015 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.2e-58
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX
Sbjct: 47  RRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 106

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEK 172
           XXXLRQAWGSLDALIGRLRAAFEENGG PEANPFGARAVRLYLREVRDLQSKARGISYEK
Sbjct: 107 XXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEK 166

Query: 173 K 174
           K
Sbjct: 167 K 167

[Close]

BLAST of MELO3C012880.2 vs. TrEMBL
Match: tr|A0A2P6PV72|A0A2P6PV72_ROSCH (Putative ALOG domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0287901 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.2e-58
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 53  RRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 112
           RRDWNTF QYLKNHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX
Sbjct: 65  RRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNXXXXX 124

Query: 113 XXXLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEK 172
           XXXLRQAWGSLDALIGRLRAAFEENGG PEANPFGARAVRLYLREVRDLQSKARGISYEK
Sbjct: 125 XXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEK 184

Query: 173 K 174
           K
Sbjct: 185 K 185

The following BLAST results are available for this feature:

BLAST of MELO3C012880.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57902.1	2.2e-66	100.00	hypothetical protein Csa_3G383780 [Cucumis sativus]	[more]
XP_008447416.1	2.2e-66	100.00	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo]	[more]
XP_011651439.1	2.0e-64	100.00	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 isoform X2 [Cucumis sativu...	[more]
XP_004152052.2	2.2e-63	99.46	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 [Cucumis sativu...	[more]
XP_022930979.1	6.7e-60	98.35	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata]	[more]

BLAST of MELO3C012880.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23290.2	6.5e-57	84.87	Protein of unknown function (DUF640)	[more]
AT2G31160.1	1.9e-56	91.60	Protein of unknown function (DUF640)	[more]
AT5G28490.1	2.0e-53	83.33	Protein of unknown function (DUF640)	[more]
AT1G07090.1	2.2e-52	75.21	Protein of unknown function (DUF640)	[more]
AT3G04510.1	1.8e-51	77.69	Protein of unknown function (DUF640)	[more]

BLAST of MELO3C012880.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LW68\|LSH4_ARATH	1.2e-55	84.87	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|A2XAV5\|G1L6_ORYSI	1.5e-55	89.08	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
sp\|Q6K5X1\|G1L6_ORYSJ	1.5e-55	89.08	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
sp\|O82268\|LSH3_ARATH	3.4e-55	91.60	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|Q7XDD0\|G1L5_ORYSJ	9.3e-53	84.87	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]

BLAST of MELO3C012880.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BHE8\|A0A1S3BHE8_CUCME	1.4e-66	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LB62\|A0A0A0LB62_CUCSA	1.4e-66	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G383780 PE=4 SV=1	[more]
tr\|A0A2I4F639\|A0A2I4F639_9ROSI	4.2e-58	97.52	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A061DNN8\|A0A061DNN8_THECC	4.2e-58	97.52	IQ motif and SEC7 domain-containing protein 2 OS=Theobroma cacao OX=3641 GN=TCM_...	[more]
tr\|A0A2P6PV72\|A0A2P6PV72_ROSCH	4.2e-58	97.52	Putative ALOG domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_C...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010492	maintenance of shoot apical meristem identity
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0010199	organ boundary specification between lateral organs and the meristem
biological_process	GO:0048441	petal development
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0048834	specification of petal number
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012880.2.1	MELO3C012880.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 37..160 e-value: 1.8E-66 score: 221.9
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 47..174 score: 84.496
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..190
None	No IPR available	PANTHER	PTHR31165:SF36	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 3	coord: 34..187
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 34..187

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012880.2	Cucumber (Gy14) v2	cgybmedB177
MELO3C012880.2	Cucumber (Gy14) v2	cgybmedB184
MELO3C012880.2	Cucumber (Gy14) v1	cgymedB034
MELO3C012880.2	Cucumber (Gy14) v1	cgymedB428
MELO3C012880.2	Cucurbita maxima (Rimu)	cmamedB545
MELO3C012880.2	Cucurbita maxima (Rimu)	cmamedB648
MELO3C012880.2	Cucurbita moschata (Rifu)	cmomedB532
MELO3C012880.2	Cucurbita moschata (Rifu)	cmomedB636
MELO3C012880.2	Cucurbita pepo (Zucchini)	cpemedB270
MELO3C012880.2	Cucurbita pepo (Zucchini)	cpemedB822
MELO3C012880.2	Wild cucumber (PI 183967)	cpimedB199
MELO3C012880.2	Wild cucumber (PI 183967)	cpimedB204
MELO3C012880.2	Cucumber (Chinese Long) v2	cumedB198
MELO3C012880.2	Cucumber (Chinese Long) v2	cumedB205
MELO3C012880.2	Melon (DHL92) v3.6.1	medmedB135
MELO3C012880.2	Bottle gourd (USVL1VR-Ls)	lsimedB370
MELO3C012880.2	Bottle gourd (USVL1VR-Ls)	lsimedB373
MELO3C012880.2	Watermelon (Charleston Gray)	medwcgB342
MELO3C012880.2	Watermelon (97103) v1	medwmB355
MELO3C012880.2	Watermelon (97103) v1	medwmB367
MELO3C012880.2	Silver-seed gourd	carmedB0757
MELO3C012880.2	Silver-seed gourd	carmedB0785
MELO3C012880.2	Cucumber (Chinese Long) v3	cucmedB203
MELO3C012880.2	Cucumber (Chinese Long) v3	cucmedB209
MELO3C012880.2	Watermelon (97103) v2	medwmbB323
MELO3C012880.2	Watermelon (97103) v2	medwmbB337
MELO3C012880.2	Wax gourd	medwgoB397
MELO3C012880.2	Wax gourd	medwgoB402