MELO3C012879 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012879
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Gag-Pol polyprotein/retrotransposon, putative
Location	chr4 : 13863714 .. 13864097 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCTCCTCAAGCACCACCTATGGTAATTAACCACAATGATAACCAAGATGAGGGTGATGGTTCTGATGGCTTAGACGATGACCAAGTTACATTATTGGAGGAGTCGAGACGTGAGGGACATGAAGTAGTTAGAAGAAAAGGTCGTGGGAGAGCTTATCAAAATATCCAAAGGAGAGCTCAACAAGAAGCACCTCAATTTGAGCGTAACATAGAAGCCATCAAATTTAAAATTTCCAAGTTCTTCGGGAAAACTGATCCAGAGGAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTGCTTGCCATAATTTTACTAACGAGCAGAAGGTTAGATTTTGTGTTTTCAAATTTAAGGATTATGCTCAAACTAGGTGA

mRNA sequence

ATGCCACCTCCTCAAGCACCACCTATGGTAATTAACCACAATGATAACCAAGATGAGGGTGATGGTTCTGATGGCTTAGACGATGACCAAGTTACATTATTGGAGGAGTCGAGACGTGAGGGACATGAAGTAGTTAGAAGAAAAGGTCGTGGGAGAGCTTATCAAAATATCCAAAGGAGAGCTCAACAAGAAGCACCTCAATTTGAGCGTAACATAGAAGCCATCAAATTTAAAATTTCCAAGTTCTTCGGGAAAACTGATCCAGAGGAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTGCTTGCCATAATTTTACTAACGAGCAGAAGGTTAGATTTTGTGTTTTCAAATTTAAGGATTATGCTCAAACTAGGTGA

Coding sequence (CDS)

ATGCCACCTCCTCAAGCACCACCTATGGTAATTAACCACAATGATAACCAAGATGAGGGTGATGGTTCTGATGGCTTAGACGATGACCAAGTTACATTATTGGAGGAGTCGAGACGTGAGGGACATGAAGTAGTTAGAAGAAAAGGTCGTGGGAGAGCTTATCAAAATATCCAAAGGAGAGCTCAACAAGAAGCACCTCAATTTGAGCGTAACATAGAAGCCATCAAATTTAAAATTTCCAAGTTCTTCGGGAAAACTGATCCAGAGGAGTACATTCAGTGGGAAAAAGAGGTGGAGAATGTGTTTGCTTGCCATAATTTTACTAACGAGCAGAAGGTTAGATTTTGTGTTTTCAAATTTAAGGATTATGCTCAAACTAGGTGA

Protein sequence

MPPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKFKDYAQTR*

Homology

[Close]

BLAST of MELO3C012879 vs. TrEMBL
Match: A5BYV1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008811 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.8e-12
Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 1


Query: 11  INHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFER 70
           I+ +D+ +E +  D  ++DQ +L      EG    R +  GR +    RRA +      R
Sbjct: 71  IDDSDDYNEDEFED--EEDQASL----NHEGKFAPRGERXGRGF----RRAPRXQDGTNR 130

Query: 71  NIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKFKDYA 125
           N+  IK KI  F GK DPE Y++WEK+VE +F CHN++ E+KV+    +F DYA
Sbjct: 131 NLGNIKMKIPSFQGKNDPEVYLEWEKKVEFIFECHNYSEEKKVKLXXIEFTDYA 174

[Close]

BLAST of MELO3C012879 vs. TrEMBL
Match: A5C3B5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020071 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.1e-11
Identity = 44/113 (38.94%), Postives = 66/113 (58.41%), Query Frame = 1


Query: 11  INHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFER 70
           ++ +D+  E +  D  + DQ +L  E+R     V+R +  GR ++ I  R Q E    +R
Sbjct: 49  VDDSDDYHENEFED--EXDQASLNHENRF----VLRGERCGRGFR-IAPRWQDET---DR 108

Query: 71  NIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKFKDY 124
           N+  IK KI  F GK DPE Y++WEK VE +F CHN++ E+K +  V +F DY
Sbjct: 109 NLGNIKMKIPSFQGKNDPEVYLEWEKNVEFIFECHNYSEEKKRKLVVIEFTDY 151

[Close]

BLAST of MELO3C012879 vs. TrEMBL
Match: U5FKB1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s07585g PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-10
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 1


Query: 20  GDGSDGLDDD--QVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQ-QEAPQFERNIEAIK 79
           G+ +D ++DD  +       R E +E   R+G  R  ++ + R    +    +RN+ +IK
Sbjct: 62  GNSADEVEDDLNRGGGFRTHRGERYENRSRRGHIRPNRDFEHRGDFDDLEDIDRNLGSIK 121

Query: 80  FKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKFKDYA 125
            KI  F GKTDPE Y+ WEK+VE +F  H +  E+KV+  V +F DYA
Sbjct: 122 LKIPAFEGKTDPEAYLDWEKKVEMIFDIHRYFEEKKVKLVVVEFTDYA 169

[Close]

BLAST of MELO3C012879 vs. TrEMBL
Match: A5AQZ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034834 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-10
Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = 1


Query: 14  NDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIE 73
           +D+ D  +     ++DQ +L      EG    R + RGR +    RRA +     +RN+ 
Sbjct: 145 DDSNDYHEDEFEDEEDQASL----NHEGKFAPRGERRGRGF----RRAPRWQDGIDRNLG 204

Query: 74  AIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKFKDY 124
            IK KI  F GK DPE Y++WEK+V+ +F CHN++ E+ V+  V + ++Y
Sbjct: 205 KIKMKIPSFQGKNDPEVYLEWEKKVKFIFECHNYSEEKNVKLVVIERRNY 246

[Close]

BLAST of MELO3C012879 vs. TrEMBL
Match: A0A151QMG5_CAJCA (Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_048225 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.5e-10
Identity = 33/101 (32.67%), Postives = 55/101 (54.46%), Query Frame = 1


Query: 24  DGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFERNIEAIKFKISKFF 83
           D ++     LL E+  E +  + R    R +   +RR +      +  IE +K  +  F 
Sbjct: 16  DAINAQMQRLLRENNEELYGRIERL-ENRDHHEEERRGRNGGAPRQNRIEGVKLNVPPFK 75

Query: 84  GKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKFKDYA 125
           GK+DPE Y++WE ++E++F C+N+  EQKV+    +F DYA
Sbjct: 76  GKSDPEAYVEWELKIEHIFTCNNYDEEQKVKLAAAEFSDYA 115

[Close]

BLAST of MELO3C012879 vs. NCBI nr
Match: gi|848863828|ref|XP_012832674.1| (PREDICTED: uncharacterized protein LOC105953547 [Erythranthe guttata])

HSP 1 Score: 79.7 bits (195), Expect = 4.0e-12
Identity = 45/124 (36.29%), Postives = 67/124 (54.03%), Query Frame = 1


Query: 3   PPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQ 62
           PP   P+V      +DE +  +   D++      + R GH   R +G      +I RR  
Sbjct: 48  PPIRQPVV----RQRDELEFDEQFFDEESEAESNTSRRGH---RGRGNRGGIFDIPRRGN 107

Query: 63  --QEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKF 122
             +E  + +RN+ +IK  I  F GK+DPE YI+WE++VE VF CHN++ E+KV+     F
Sbjct: 108 VGRERDEVDRNLSSIKLSIPSFQGKSDPEAYIEWERKVELVFDCHNYSEEKKVKLAAVAF 164

Query: 123 KDYA 125
            DYA
Sbjct: 168 TDYA 164

[Close]

BLAST of MELO3C012879 vs. NCBI nr
Match: gi|848861377|ref|XP_012831508.1| (PREDICTED: uncharacterized protein LOC105952492 [Erythranthe guttata])

HSP 1 Score: 79.7 bits (195), Expect = 4.0e-12
Identity = 50/129 (38.76%), Postives = 69/129 (53.49%), Query Frame = 1


Query: 2   PPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQ----NI 61
           P PQ  P +      Q      D L+ D+    EES  E +   RR  RGR  +    +I
Sbjct: 42  PAPQLRPPI-----RQPVVRQRDELEFDEQLFDEESEAESN-TSRRWHRGRGNRGGIFDI 101

Query: 62  QRRAQ--QEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRF 121
            RR    +E  + +RN+ +IK  I  F GK+DPE YI+WE++VE VF CHN++ E+KV+ 
Sbjct: 102 PRRGNVGRERDEVDRNLSSIKLSIPSFQGKSDPEAYIEWERKVELVFDCHNYSEEKKVKL 161

Query: 122 CVFKFKDYA 125
               F DYA
Sbjct: 162 AAVAFTDYA 164

[Close]

BLAST of MELO3C012879 vs. NCBI nr
Match: gi|848881820|ref|XP_012841256.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105961573 [Erythranthe guttata])

HSP 1 Score: 79.3 bits (194), Expect = 5.3e-12
Identity = 50/129 (38.76%), Postives = 69/129 (53.49%), Query Frame = 1


Query: 2   PPPQAPPMVINHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQ----NI 61
           P PQ  P +      Q      D L+ D+    EES  E +   RR  RGR  +    +I
Sbjct: 42  PAPQLRPPI-----RQPVVRQRDELEFDEQFFDEESEAESN-TSRRWHRGRGNRGGKFDI 101

Query: 62  QRRAQ--QEAPQFERNIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRF 121
            RR    +E  + +RN+ +IK  I  F GK+DPE YI+WE++VE VF CHN++ E+KV+ 
Sbjct: 102 PRRGNVGRERDEVDRNLNSIKLSIPSFQGKSDPEAYIEWERKVELVFDCHNYSEEKKVKL 161

Query: 122 CVFKFKDYA 125
               F DYA
Sbjct: 162 AAVAFTDYA 164

[Close]

BLAST of MELO3C012879 vs. NCBI nr
Match: gi|147791358|emb|CAN64020.1| (hypothetical protein VITISV_008811 [Vitis vinifera])

HSP 1 Score: 79.0 bits (193), Expect = 6.9e-12
Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 1


Query: 11  INHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFER 70
           I+ +D+ +E +  D  ++DQ +L      EG    R +  GR +    RRA +      R
Sbjct: 71  IDDSDDYNEDEFED--EEDQASL----NHEGKFAPRGERXGRGF----RRAPRXQDGTNR 130

Query: 71  NIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKFKDYA 125
           N+  IK KI  F GK DPE Y++WEK+VE +F CHN++ E+KV+    +F DYA
Sbjct: 131 NLGNIKMKIPSFQGKNDPEVYLEWEKKVEFIFECHNYSEEKKVKLXXIEFTDYA 174

[Close]

BLAST of MELO3C012879 vs. NCBI nr
Match: gi|731403219|ref|XP_010654970.1| (PREDICTED: LOW QUALITY PROTEIN: transposon Tf2-1 polyprotein [Vitis vinifera])

HSP 1 Score: 76.3 bits (186), Expect = 4.5e-11
Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 1


Query: 11  INHNDNQDEGDGSDGLDDDQVTLLEESRREGHEVVRRKGRGRAYQNIQRRAQQEAPQFER 70
           ++ +D+  E +  D  ++DQ +L      EG    R + RGR +    RRA +     +R
Sbjct: 42  VDDSDDYHEDEFED--EEDQASL----NHEGRFAPRGERRGRGF----RRAPRWQDGTDR 101

Query: 71  NIEAIKFKISKFFGKTDPEEYIQWEKEVENVFACHNFTNEQKVRFCVFKFKDYA 125
           N+  IK KI  F GK DP+ Y++WEK+VE +F C N++ E+ V+  V +F DYA
Sbjct: 102 NLGNIKIKIPSFQGKNDPKVYLEWEKKVEFIFECRNYSEEKNVKLAVIEFTDYA 145

The following BLAST results are available for this feature:

BLAST of MELO3C012879 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BYV1_VITVI	4.8e-12	38.60	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008811 PE=4 SV=1	[more]
A5C3B5_VITVI	9.1e-11	38.94	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020071 PE=4 SV=1	[more]
U5FKB1_POPTR	2.0e-10	37.04	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s07585g PE=4 SV=1	[more]
A5AQZ7_VITVI	3.4e-10	35.45	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034834 PE=4 SV=1	[more]
A0A151QMG5_CAJCA	4.5e-10	32.67	Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_048225 PE=4 SV=1	[more]

BLAST of MELO3C012879 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|848863828\|ref\|XP_012832674.1\|	4.0e-12	36.29	PREDICTED: uncharacterized protein LOC105953547 [Erythranthe guttata]	[more]
gi\|848861377\|ref\|XP_012831508.1\|	4.0e-12	38.76	PREDICTED: uncharacterized protein LOC105952492 [Erythranthe guttata]	[more]
gi\|848881820\|ref\|XP_012841256.1\|	5.3e-12	38.76	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105961573 [Erythranth...	[more]
gi\|147791358\|emb\|CAN64020.1\|	6.9e-12	38.60	hypothetical protein VITISV_008811 [Vitis vinifera]	[more]
gi\|731403219\|ref\|XP_010654970.1\|	4.5e-11	36.84	PREDICTED: LOW QUALITY PROTEIN: transposon Tf2-1 polyprotein [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012879T1	MELO3C012879T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012879	Cucumber (Chinese Long) v2	cumeB213
MELO3C012879	Cucumber (Chinese Long) v2	cumeB219
MELO3C012879	Watermelon (Charleston Gray)	mewcgB346
MELO3C012879	Watermelon (97103) v1	mewmB357
MELO3C012879	Watermelon (97103) v1	mewmB371
MELO3C012879	Cucurbita pepo (Zucchini)	cpemeB231
MELO3C012879	Cucurbita pepo (Zucchini)	cpemeB690
MELO3C012879	Bottle gourd (USVL1VR-Ls)	lsimeB356
MELO3C012879	Bottle gourd (USVL1VR-Ls)	lsimeB358
MELO3C012879	Cucumber (Gy14) v2	cgybmeB176
MELO3C012879	Silver-seed gourd	carmeB0744
MELO3C012879	Silver-seed gourd	carmeB0772
MELO3C012879	Cucumber (Chinese Long) v3	cucmeB209
MELO3C012879	Cucumber (Chinese Long) v3	cucmeB215
MELO3C012879	Watermelon (97103) v2	mewmbB335
MELO3C012879	Watermelon (97103) v2	mewmbB349
MELO3C012879	Wax gourd	mewgoB396
MELO3C012879	Wax gourd	mewgoB401
MELO3C012879	Melon (DHL92) v3.5.1	memeB140
MELO3C012879	Cucumber (Gy14) v1	cgymeB035
MELO3C012879	Cucurbita maxima (Rimu)	cmameB471
MELO3C012879	Cucurbita maxima (Rimu)	cmameB568
MELO3C012879	Cucurbita moschata (Rifu)	cmomeB461
MELO3C012879	Cucurbita moschata (Rifu)	cmomeB557
MELO3C012879	Wild cucumber (PI 183967)	cpimeB203
MELO3C012879	Wild cucumber (PI 183967)	cpimeB210