MELO3C012878 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012878
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	chr4 : 13863225 .. 13863602 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACAAAAGTTTCAAGCATTGAGGCAAGGCAACAAGTCGGTGGAAGACTACTACAACGAGATGGACACTTTGATTGATCGACTTGATCTTGATGAAGAAATGGAGACTATCATGGCACAATTTTTGAATGGCCTCAACAAGGAGATTGTTGACAAGGTTGATTTGCAGCCGTATTCTGACATAGAGGAGATGTTGCATCTTGCTATCAAAGTTGAAAAACAATTTAGTACAAGAATAACAAGGTACAACTCTTATAAACCTTCTTCTTCCTTCAACTCATCATGGAAAAAGGAGAACAAAAGTAAATATAGAAGTAGAGATAAGTTTGTGAGTGGAAGTCTTAAAGAAAAAGGTGAGTCTTCTATGAAAGGTTAA

mRNA sequence

ATGACACAAAAGTTTCAAGCATTGAGGCAAGGCAACAAGTCGGTGGAAGACTACTACAACGAGATGGACACTTTGATTGATCGACTTGATCTTGATGAAGAAATGGAGACTATCATGGCACAATTTTTGAATGGCCTCAACAAGGAGATTGTTGACAAGGTTGATTTGCAGCCGTATTCTGACATAGAGGAGATGTTGCATCTTGCTATCAAAGTTGAAAAACAATTTAGTACAAGAATAACAAGGTACAACTCTTATAAACCTTCTTCTTCCTTCAACTCATCATGGAAAAAGGAGAACAAAAGTAAATATAGAAGTAGAGATAAGTTTGTGAGTGGAAGTCTTAAAGAAAAAGGTGAGTCTTCTATGAAAGGTTAA

Coding sequence (CDS)

ATGACACAAAAGTTTCAAGCATTGAGGCAAGGCAACAAGTCGGTGGAAGACTACTACAACGAGATGGACACTTTGATTGATCGACTTGATCTTGATGAAGAAATGGAGACTATCATGGCACAATTTTTGAATGGCCTCAACAAGGAGATTGTTGACAAGGTTGATTTGCAGCCGTATTCTGACATAGAGGAGATGTTGCATCTTGCTATCAAAGTTGAAAAACAATTTAGTACAAGAATAACAAGGTACAACTCTTATAAACCTTCTTCTTCCTTCAACTCATCATGGAAAAAGGAGAACAAAAGTAAATATAGAAGTAGAGATAAGTTTGTGAGTGGAAGTCTTAAAGAAAAAGGTGAGTCTTCTATGAAAGGTTAA

Protein sequence

MTQKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIEEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKENKSKYRSRDKFVSGSLKEKGESSMKG*

Homology

[Close]

BLAST of MELO3C012878 vs. TrEMBL
Match: Q9LQH2_ARATH (F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-16
Identity = 52/128 (40.62%), Postives = 80/128 (62.50%), Query Frame = 1


Query: 4   KFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIE 63
           + + L QGNKSVE+YY EM+TL+ R D+ E+ E IM++F+ GLN++I+D++++Q Y ++E
Sbjct: 531 RLRNLVQGNKSVEEYYKEMETLMLRADIQEDNEAIMSRFMGGLNRDIIDRLEVQHYVELE 590

Query: 64  EMLHLAIKVEKQFSTRITR--YNSYKPS------SSFNSSWKKENKSKYRSRDKFVSGSL 123
           E+LH AI  EKQ   R ++  + S KPS      S F   +K   K K   +D+      
Sbjct: 591 ELLHKAIMFEKQLKRRSSKPSFGSGKPSYHKDERSGFQKDYKPFIKPKVEDQDQ------ 650

[Close]

BLAST of MELO3C012878 vs. TrEMBL
Match: A0A151U9W8_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_020294 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.5e-15
Identity = 46/103 (44.66%), Postives = 71/103 (68.93%), Query Frame = 1


Query: 3   QKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDI 62
           +K Q+L QG+ SVEDYY EM+  + R++++E+ E  MA+F+ GL KE+VD V+LQ Y ++
Sbjct: 124 RKLQSLTQGSMSVEDYYKEMELAMIRVNVEEDYEVTMARFIGGLKKEMVDVVELQHYVEV 183

Query: 63  EEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWK---KENKS 103
           E++LH AI+VE+Q  ++       K +SS NS W+   K NK+
Sbjct: 184 EDLLHKAIQVERQMKSK----GPSKVNSSSNSLWRSNWKNNKA 222

[Close]

BLAST of MELO3C012878 vs. TrEMBL
Match: Q9ZPF9_ARATH (F5K24.1 protein OS=Arabidopsis thaliana GN=F5K24.1 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.0e-15
Identity = 47/120 (39.17%), Postives = 76/120 (63.33%), Query Frame = 1


Query: 3   QKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDI 62
           Q+ + L QGN++VE+Y+ EM+TL+ R D+ EE E  M++F+ GLN++I+D+ ++  Y ++
Sbjct: 151 QRLRNLVQGNRTVEEYFKEMETLMLRADVQEECEATMSRFMGGLNRDILDRFEVIHYENL 210

Query: 63  EEMLHLAIKVEKQFSTRITR--YNSYKPS--SSFNSSWKKENKSKYRSRDKFVSGSLKEK 119
           EE+ H A+  EKQ   R  +  YNS KPS      S ++KE K   + + + +S   KEK
Sbjct: 211 EELFHKAVMFEKQIKRRSAKPSYNSSKPSYQREEKSGFQKEYKPFVKPKVEEISSKGKEK 270

[Close]

BLAST of MELO3C012878 vs. TrEMBL
Match: A5AMK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016481 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.0e-15
Identity = 43/106 (40.57%), Postives = 74/106 (69.81%), Query Frame = 1


Query: 3   QKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDI 62
           QK Q+L QG +SV+DY+ EM+  + R +++E  E  MA+FLNGLN++I + V+LQ Y ++
Sbjct: 286 QKLQSLTQGYRSVDDYHKEMEIAMIRANVEENREATMARFLNGLNRDIANVVELQHYVEL 345

Query: 63  EEMLHLAIKVEKQFSTRITR-YNSYKPSSSFNSSWKKENKSKYRSR 108
           E+M+H+AIKVE+Q   + TR + +   S+S+  + +K+    ++S+
Sbjct: 346 EDMVHMAIKVERQLKRKETRSFQNPGSSASWRXNGRKDEGVVFKSK 391

[Close]

BLAST of MELO3C012878 vs. TrEMBL
Match: A5BZH4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036847 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.8e-15
Identity = 43/106 (40.57%), Postives = 74/106 (69.81%), Query Frame = 1


Query: 3   QKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDI 62
           QK Q+L QG +SV+DY+ EM+  +   +++E+ E  MA+FLNGLN++I + V+LQ Y ++
Sbjct: 227 QKLQSLTQGYRSVDDYHKEMEIAMIPTNVEEDREATMARFLNGLNRDIANVVELQHYVEL 286

Query: 63  EEMLHLAIKVEKQFSTRITR-YNSYKPSSSFNSSWKKENKSKYRSR 108
           E+M+H+AIKVE+Q   + TR + +   SSS+  + +K+    ++S+
Sbjct: 287 EDMVHMAIKVERQLKRKGTRSFRNVGSSSSWRPNGRKDEGVVFKSK 332

[Close]

BLAST of MELO3C012878 vs. NCBI nr
Match: gi|923733656|ref|XP_013668961.1| (PREDICTED: uncharacterized protein LOC106373318 [Brassica napus])

HSP 1 Score: 99.4 bits (246), Expect = 4.9e-18
Identity = 52/123 (42.28%), Postives = 84/123 (68.29%), Query Frame = 1


Query: 3    QKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDI 62
            QK + L QG+KSVEDY+ EM+TL+ + DL+EE+E  MA+F  GLN++I D+++LQ Y D+
Sbjct: 1939 QKLRRLSQGSKSVEDYHQEMETLMLKADLEEEVEATMARFQGGLNRDIQDRLELQEYDDM 1998

Query: 63   EEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKENKSKYRSRDKFVSGSLKEKGESS 122
            +E+LH AI +E+Q   + +  +SY P+S    ++ KE+K   +S++   S S++ K +  
Sbjct: 1999 DELLHKAILIEQQNKRKSSTRSSYTPAS--KPAYSKEDKPGDKSKEG--SSSVENKRDDK 2057

Query: 123  MKG 126
             KG
Sbjct: 2059 GKG 2057

[Close]


Query: 3    QKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDI 62
            QK + L QG+KSVEDY+ EM+TL+ + DL+EE+E  MA+F  GLN++I D+++LQ Y D+
Sbjct: 3365 QKLRRLSQGSKSVEDYHQEMETLMLKADLEEEVEATMARFQGGLNRDIQDRLELQEYEDM 3424

Query: 63   EEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKENKSKYRSRDKFVSGSLKEKGESS 122
            +E+LH AI +E+Q   + +  +SY P+S    ++ KE+K   +S++   S S++ K +  
Sbjct: 3425 DELLHKAILIEQQNKRKSSTRSSYTPAS--KPAYSKEDKPGDKSKEG--SSSVENKRDDK 3483

Query: 123  MKG 126
             KG
Sbjct: 3485 GKG 3483

HSP 2 Score: 99.0 bits (245), Expect = 6.3e-18
Identity = 53/123 (43.09%), Postives = 84/123 (68.29%), Query Frame = 1


Query: 3   QKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDI 62
           QK + L QG+KSVEDY+ EM+TL+ + DL+E +E IMA+F  GLN++I D+++LQ Y D+
Sbjct: 181 QKLRRLSQGSKSVEDYHQEMETLMLKADLEEGVEAIMAKFQGGLNRDIQDRLELQEYEDM 240

Query: 63  EEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKENKSKYRSRDKFVSGSLKEKGESS 122
           +E+LH AI +E+Q   + +  +SY P+S    ++ KE+K   +S+D   S S++ K +  
Sbjct: 241 DELLHKAILIEQQNKRKSSIRSSYTPTS--KPAYSKEDKPGDKSKDG--SSSVETKRDDK 299

Query: 123 MKG 126
            KG
Sbjct: 301 GKG 299

[Close]

BLAST of MELO3C012878 vs. NCBI nr
Match: gi|1000972725|ref|XP_015573036.1| (PREDICTED: uncharacterized protein LOC107261037 [Ricinus communis])

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 47/121 (38.84%), Postives = 81/121 (66.94%), Query Frame = 1


Query: 4   KFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIE 63
           K Q+L QG KSVE+YY EM+  + R++++E+ E  +A+FL+GLNK+I + V+LQ Y ++E
Sbjct: 144 KLQSLVQGGKSVEEYYQEMEIALIRVNIEEDREATVARFLHGLNKDIANLVELQHYVEME 203

Query: 64  EMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKENKSKYRSRDKFVSGSLKEKGESSM 123
           +MLH+AIK+++Q   +    NS   +S++ S+WK  N ++ + ++       + KG+ S 
Sbjct: 204 DMLHMAIKIKRQLKQK--SKNSSSTNSNWKSNWKGTNSAQNKGKEVSKDNKAETKGDQSN 262

Query: 124 K 125
           K
Sbjct: 264 K 262

[Close]

BLAST of MELO3C012878 vs. NCBI nr
Match: gi|923594992|ref|XP_013739512.1| (PREDICTED: uncharacterized protein LOC106442364 [Brassica napus])

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17
Identity = 52/123 (42.28%), Postives = 83/123 (67.48%), Query Frame = 1


Query: 3   QKFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDI 62
           QK + L QG+KSVEDY+ EM+TL+ + DL+E +E  MA+F  GLN++I D+++LQ Y D+
Sbjct: 222 QKLRRLSQGSKSVEDYHQEMETLMLKADLEEGVEATMARFQGGLNRDIQDRLELQEYEDM 281

Query: 63  EEMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKENKSKYRSRDKFVSGSLKEKGESS 122
           +E+LH AI +E+Q   + +  +SY P+S    ++ KE+K   +S+D   S S++ K +  
Sbjct: 282 DELLHKAILIEQQNKRKSSTRSSYTPAS--KPAYSKEDKPGDKSKDG--SSSVETKRDDK 340

Query: 123 MKG 126
            KG
Sbjct: 342 GKG 340

[Close]

BLAST of MELO3C012878 vs. NCBI nr
Match: gi|1000956278|ref|XP_015577563.1| (PREDICTED: uncharacterized protein LOC107261617 [Ricinus communis])

HSP 1 Score: 97.4 bits (241), Expect = 1.8e-17
Identity = 48/121 (39.67%), Postives = 78/121 (64.46%), Query Frame = 1


Query: 4   KFQALRQGNKSVEDYYNEMDTLIDRLDLDEEMETIMAQFLNGLNKEIVDKVDLQPYSDIE 63
           K Q+L QG KS+E+YY EM+  + R ++ E+ E  MAQFL+GLNK+I + V+LQ Y ++E
Sbjct: 140 KLQSLVQGGKSIEEYYQEMEIALIRANIYEDREATMAQFLHGLNKDIANLVELQHYVEME 199

Query: 64  EMLHLAIKVEKQFSTRITRYNSYKPSSSFNSSWKKENKSKYRSRDKFVSGSLKEKGESSM 123
           +MLH+ IK+E+Q   +    NS   +S++ S+WK  N ++ + ++       + KG+ S 
Sbjct: 200 DMLHMEIKIERQLKQK--SKNSSSTNSNWKSNWKCTNSAQNKGKEVSKDNKAETKGDQSN 258

Query: 124 K 125
           K
Sbjct: 260 K 258

The following BLAST results are available for this feature:

BLAST of MELO3C012878 vs. TrEMBL


Match Name	E-value	Identity	Description
Q9LQH2_ARATH	3.2e-16	40.63	F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1	[more]
A0A151U9W8_CAJCA	3.5e-15	44.66	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_020294 PE=4 SV=1	[more]
Q9ZPF9_ARATH	6.0e-15	39.17	F5K24.1 protein OS=Arabidopsis thaliana GN=F5K24.1 PE=4 SV=1	[more]
A5AMK2_VITVI	6.0e-15	40.57	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016481 PE=4 SV=1	[more]
A5BZH4_VITVI	7.8e-15	40.57	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036847 PE=4 SV=1	[more]

BLAST of MELO3C012878 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|923733656\|ref\|XP_013668961.1\|	4.9e-18	42.28	PREDICTED: uncharacterized protein LOC106373318 [Brassica napus]	[more]
gi\|923733656\|ref\|XP_013668961.1\|	4.9e-18	42.28	PREDICTED: uncharacterized protein LOC106373318 [Brassica napus]	[more]
gi\|1000972725\|ref\|XP_015573036.1\|	1.1e-17	38.84	PREDICTED: uncharacterized protein LOC107261037 [Ricinus communis]	[more]
gi\|923594992\|ref\|XP_013739512.1\|	1.4e-17	42.28	PREDICTED: uncharacterized protein LOC106442364 [Brassica napus]	[more]
gi\|1000956278\|ref\|XP_015577563.1\|	1.8e-17	39.67	PREDICTED: uncharacterized protein LOC107261617 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012878T1	MELO3C012878T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 2..47 score: 8.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012878	Cucurbita maxima (Rimu)	cmameB471
MELO3C012878	Cucurbita maxima (Rimu)	cmameB568
MELO3C012878	Cucurbita moschata (Rifu)	cmomeB461
MELO3C012878	Cucurbita moschata (Rifu)	cmomeB557
MELO3C012878	Wild cucumber (PI 183967)	cpimeB203
MELO3C012878	Wild cucumber (PI 183967)	cpimeB210
MELO3C012878	Cucumber (Chinese Long) v2	cumeB213
MELO3C012878	Cucumber (Chinese Long) v2	cumeB219
MELO3C012878	Watermelon (Charleston Gray)	mewcgB346
MELO3C012878	Watermelon (97103) v1	mewmB357
MELO3C012878	Watermelon (97103) v1	mewmB371
MELO3C012878	Cucurbita pepo (Zucchini)	cpemeB231
MELO3C012878	Cucurbita pepo (Zucchini)	cpemeB690
MELO3C012878	Bottle gourd (USVL1VR-Ls)	lsimeB356
MELO3C012878	Bottle gourd (USVL1VR-Ls)	lsimeB358
MELO3C012878	Cucumber (Gy14) v2	cgybmeB176
MELO3C012878	Silver-seed gourd	carmeB0744
MELO3C012878	Silver-seed gourd	carmeB0772
MELO3C012878	Cucumber (Chinese Long) v3	cucmeB209
MELO3C012878	Cucumber (Chinese Long) v3	cucmeB215
MELO3C012878	Watermelon (97103) v2	mewmbB335
MELO3C012878	Watermelon (97103) v2	mewmbB349
MELO3C012878	Wax gourd	mewgoB396
MELO3C012878	Wax gourd	mewgoB401
MELO3C012878	Melon (DHL92) v3.5.1	memeB140
MELO3C012878	Cucumber (Gy14) v1	cgymeB035