MELO3C012875 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012875
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ribosomal RNA small subunit methyltransferase G
Location	chr4 : 13803908 .. 13804279 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGAAATAGGAGCTTCCTTGCCGATAGTAGAAGCAAAGTTTGAAAGAGTGGCAGAGAAGGCCCAGAAGAAGACAGAACAAGTGAAGTCTAGAGTACTCAAGATTAAGGAGCAGACGCAAGGTGTTAAGGCCTTGGTGGAAGAAAAGCTCAAAGCTAAAATGAAGGGATGGAAGGAGCTCCGAAGTAAGGTTGAGGAGGTAGCTTTCTCTGTGGAGAAGAGCAAAGAAAAAGGGAAGGAAAAGACTTTTGAGGAATTTTGCGAGGAGGCCTCAAAAGAAATTAAGGAGTTGAGTTCTTTGAAGGATGATGCCCTAAAGCTAAGGAAAAAGAGAAGAGTAAAAATGAAGAAGAAAACTTTAAGGGAGTAG

mRNA sequence

ATGCGAGAAATAGGAGCTTCCTTGCCGATAGTAGAAGCAAAGTTTGAAAGAGTGGCAGAGAAGGCCCAGAAGAAGACAGAACAAGTGAAGTCTAGAGTACTCAAGATTAAGGAGCAGACGCAAGGTGTTAAGGCCTTGGTGGAAGAAAAGCTCAAAGCTAAAATGAAGGGATGGAAGGAGCTCCGAAGTAAGGTTGAGGAGGTAGCTTTCTCTGTGGAGAAGAGCAAAGAAAAAGGGAAGGAAAAGACTTTTGAGGAATTTTGCGAGGAGGCCTCAAAAGAAATTAAGGAGTTGAGTTCTTTGAAGGATGATGCCCTAAAGCTAAGGAAAAAGAGAAGAGTAAAAATGAAGAAGAAAACTTTAAGGGAGTAG

Coding sequence (CDS)

ATGCGAGAAATAGGAGCTTCCTTGCCGATAGTAGAAGCAAAGTTTGAAAGAGTGGCAGAGAAGGCCCAGAAGAAGACAGAACAAGTGAAGTCTAGAGTACTCAAGATTAAGGAGCAGACGCAAGGTGTTAAGGCCTTGGTGGAAGAAAAGCTCAAAGCTAAAATGAAGGGATGGAAGGAGCTCCGAAGTAAGGTTGAGGAGGTAGCTTTCTCTGTGGAGAAGAGCAAAGAAAAAGGGAAGGAAAAGACTTTTGAGGAATTTTGCGAGGAGGCCTCAAAAGAAATTAAGGAGTTGAGTTCTTTGAAGGATGATGCCCTAAAGCTAAGGAAAAAGAGAAGAGTAAAAATGAAGAAGAAAACTTTAAGGGAGTAG

Protein sequence

MREIGASLPIVEAKFERVAEKAQKKTEQVKSRVLKIKEQTQGVKALVEEKLKAKMKGWKELRSKVEEVAFSVEKSKEKGKEKTFEEFCEEASKEIKELSSLKDDALKLRKKRRVKMKKKTLRE*

Homology

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BLAST of MELO3C012875 vs. Swiss-Prot
Match: YPF05_PLAF7 (Uncharacterized protein PF11_0207 OS=Plasmodium falciparum (isolate 3D7) GN=PF11_0207 PE=1 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 7.1e-06
Identity = 33/127 (25.98%), Postives = 75/127 (59.06%), Query Frame = 1


Query: 3   EIGASLPIVEAKFERVAEKAQKKTEQVKSRVLKIKEQTQGVKALVEEKLKAKMKGWK--- 62
           EI   +  V+ + + V E+ ++  E++K    +IKE+ + VK  ++E++K ++K  K   
Sbjct: 536 EIKEEIKEVKEEIKEVKEEIKEVKEEIKEVKEEIKEEIKEVKEEIKEEIKEEIKEVKEEI 595

Query: 63  --ELRSKVEEVAFSVEKSKEKGKEKTFEEFCEEASKEIKEL-SSLKDDALKLRKKRRVKM 122
             E++ +++EV   +++ KE+ KE+  EE  +E  +EIKE+   +K++  +++++ + ++
Sbjct: 596 KEEVKEEIKEVKEEIKEVKEEIKEEVKEEI-KEVKEEIKEVKEEIKEEIKEVKEEIKEEV 655

Query: 123 KKKTLRE 124
           K++   E
Sbjct: 656 KEEIKEE 661

HSP 2 Score: 50.4 bits (119), Expect = 1.6e-05
Identity = 28/90 (31.11%), Postives = 55/90 (61.11%), Query Frame = 1


Query: 16  ERVAEKAQKKTEQVKSRVLKIKEQTQGVKALVEEKLKAKMKGWKELRSKVEEVAFSVEKS 75
           E + E  ++  E+VK  + ++KE+ + VK  ++E++K ++   KE++ +++EV   +++ 
Sbjct: 586 EEIKEVKEEIKEEVKEEIKEVKEEIKEVKEEIKEEVKEEI---KEVKEEIKEVKEEIKEE 645

Query: 76  KEKGKEKTFEEFCEEASKEIKEL-SSLKDD 105
            ++ KE+  EE  EE  +EIKE+   LK+D
Sbjct: 646 IKEVKEEIKEEVKEEIKEEIKEIKEELKND 672

HSP 3 Score: 50.4 bits (119), Expect = 1.6e-05
Identity = 34/115 (29.57%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 16  ERVAEKAQKKTEQVKSRVLKIKEQTQGVKALVEEKLKAKMKGWK-----ELRSKVEEVAF 75
           ER  E  ++  E+VK  + +IKE+ + VK  ++E++K ++K  K     E++ +++EV  
Sbjct: 487 ERKEEIKEEFKEEVKEEIKEIKEEIKEVKEEIKEEIKEEIKEVKEEIKEEIKEEIKEVKE 546

Query: 76  SVEKSKEKGKE--KTFEEFCEEASKEIKELSSLKDDALKLRKKRRVKMKKKTLRE 124
            +++ KE+ KE  +  +E  EE  +EIKE+     + +K   K  +K  K+ ++E
Sbjct: 547 EIKEVKEEIKEVKEEIKEVKEEIKEEIKEVK----EEIKEEIKEEIKEVKEEIKE 597

HSP 4 Score: 48.5 bits (114), Expect = 6.1e-05
Identity = 32/117 (27.35%), Postives = 66/117 (56.41%), Query Frame = 1


Query: 11  VEAKFERVAEKAQKKTEQVKSRVLKIKEQTQGVKALVEEKLKAKMK----GWKELRSKVE 70
           V+ + + + E+ ++  E++K    +IKE+ + VK  ++E++K ++K      KE++ +++
Sbjct: 500 VKEEIKEIKEEIKEVKEEIKE---EIKEEIKEVKEEIKEEIKEEIKEVKEEIKEVKEEIK 559

Query: 71  EVAFSVEKSKEKGKEKTFEEFCEEASKEIKELSSLKDDALKLRKKRRVKMKKKTLRE 124
           EV   +++ KE+ KE+  +E  EE  +EIKE      + +K   K  +K  K+ ++E
Sbjct: 560 EVKEEIKEVKEEIKEE-IKEVKEEIKEEIKEEIKEVKEEIKEEVKEEIKEVKEEIKE 612

HSP 5 Score: 34.3 bits (77), Expect = 1.2e+00
Identity = 29/108 (26.85%), Postives = 51/108 (47.22%), Query Frame = 1


Query: 24  KKTEQVKSRVLKIKEQTQGVKALVEEKLKAKMKGWKELRSKVEEVAFSVEKSKE-----K 83
           KK E+ K       E+   ++ L E + K      K+L S+  + A  + + ++     +
Sbjct: 434 KKKEESKENDTNKSEKPLYLRRLEEYRKK------KKLESQANDTAMKMHEKEQIDDIQE 493

Query: 84  GKEKTFEEFCEEASKEIKEL-SSLKD--DALKLRKKRRVKMKKKTLRE 124
            KE+  EEF EE  +EIKE+   +K+  + +K   K  +K  K+ ++E
Sbjct: 494 RKEEIKEEFKEEVKEEIKEIKEEIKEVKEEIKEEIKEEIKEVKEEIKE 535

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BLAST of MELO3C012875 vs. TrEMBL
Match: A0A0A0LNF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145900 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.2e-13
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 1


Query: 31  SRVLKIKEQTQGVKALVEEKLKAKMKGWKELRSKVEEVAFSVEKSKEKGKEKTFEEFCEE 90
           S +LKIK +  G+KAL +EK +  ++ W+EL SK +EVA SVEK KEK KEK  +E  EE
Sbjct: 2   SGILKIKVKAHGIKALAQEKQETNLREWEELHSKDDEVALSVEKDKEKEKEKGDQEIAEE 61

Query: 91  ASKEIKELSSLKDDALKLRKKRRVKMKKKTL 122
             KEI  +SSL+++A + R+KR  K+ K  L
Sbjct: 62  LEKEIGHMSSLEEEAPR-RQKRISKVSKNFL 91

[Close]

BLAST of MELO3C012875 vs. NCBI nr
Match: gi|659083323|ref|XP_008442290.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 6.7e-20
Identity = 60/115 (52.17%), Postives = 83/115 (72.17%), Query Frame = 1


Query: 10  IVEAKFERVAEKAQKKTEQVKSRVLKIKEQTQGVKALVEEKLKAKMKGWKELRSKVEEVA 69
           +V+ +FERV  KAQ+KTE+V++R+LKIK + Q   AL E K + K++  +EL +KV+++A
Sbjct: 1   MVQTEFERVVNKAQEKTEKVRARLLKIKVKAQRAMALAEGKKEIKLRQPEELLNKVDKLA 60

Query: 70  FSVEKSKEKGKEKTFEEFCEEASKEIKELSSLKDDAL-KLRKKRRVKMKKKTLRE 124
            SVEK KE  KEKTFEEF +E  KEI E S L+D+ + +  KKR V MKKK LR+
Sbjct: 61  LSVEKGKE--KEKTFEEFYKEFEKEIDEFSPLEDNVVERPAKKRNVTMKKKVLRD 113

[Close]

BLAST of MELO3C012875 vs. NCBI nr
Match: gi|659130998|ref|XP_008465464.1| (PREDICTED: DNA ligase 1-like [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 3.5e-13
Identity = 48/114 (42.11%), Postives = 75/114 (65.79%), Query Frame = 1


Query: 2   REIGASLPIVEAKFERVAEKAQKKTEQVKSRVLKIKEQTQGVKALVEEKLKAKMKGWKEL 61
           +E+       +   E+  +++  +  + ++ +LKIK + QG+KAL EEK + K++  +EL
Sbjct: 13  KELKTKASRAQDDIEKDGKESPGEDGESRTGLLKIKVKAQGIKALEEEKKEIKLREKEEL 72

Query: 62  RSKVEEVAFSVEKSKEKGKEKTFEEFCEEASKEIKELSSLKDDAL-KLRKKRRV 115
            +KV++VA SVEK KE   EKTFEE CEE  KEI+ELS L+D+ + K  KK+R+
Sbjct: 73  LNKVDKVALSVEKRKE---EKTFEEHCEEFKKEIEELSPLEDEVVEKSSKKKRI 123

[Close]

BLAST of MELO3C012875 vs. NCBI nr
Match: gi|700206372|gb|KGN61491.1| (hypothetical protein Csa_2G145900 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 6.0e-13
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 1


Query: 31  SRVLKIKEQTQGVKALVEEKLKAKMKGWKELRSKVEEVAFSVEKSKEKGKEKTFEEFCEE 90
           S +LKIK +  G+KAL +EK +  ++ W+EL SK +EVA SVEK KEK KEK  +E  EE
Sbjct: 2   SGILKIKVKAHGIKALAQEKQETNLREWEELHSKDDEVALSVEKDKEKEKEKGDQEIAEE 61

Query: 91  ASKEIKELSSLKDDALKLRKKRRVKMKKKTL 122
             KEI  +SSL+++A + R+KR  K+ K  L
Sbjct: 62  LEKEIGHMSSLEEEAPR-RQKRISKVSKNFL 91

[Close]

BLAST of MELO3C012875 vs. NCBI nr
Match: gi|659123312|ref|XP_008461598.1| (PREDICTED: PERQ amino acid-rich with GYF domain-containing protein 2-like [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 5.1e-12
Identity = 43/108 (39.81%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 6   ASLPIVEAKFERVAEKAQKKTEQVKSRVLKIKEQTQGVKALVEEKLKAKMKGWKELRSKV 65
           A +  +   F++VA K  KKT+++K  +LKIK + QGVKAL EEK ++ ++  +EL ++V
Sbjct: 33  AQINTMTTNFDKVARKPLKKTKKLKKWLLKIKVKAQGVKALAEEKKESMLREREELLNEV 92

Query: 66  EEVAFSVEKSKEKGKEKTFEEFCEEASKEIKELSSLKDDALKLRKKRR 114
           +++A  V KS  KGKEKT + + +E  KE++E  SL+D  ++ + K++
Sbjct: 93  DKMALLVNKS--KGKEKTTDGYDKEFEKELEEFISLEDGVVEKQPKKK 138

[Close]

BLAST of MELO3C012875 vs. NCBI nr
Match: gi|659109371|ref|XP_008454680.1| (PREDICTED: uncharacterized protein LOC103495036 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 4.2e-06
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1


Query: 44  KALVEEKLKAKMKGWKELRSKVEEVAFSVEKSKEKGKEKTFEEFCEEASKEIKELSSLKD 103
           KAL +EK + K++  +EL +KVE+VA S EK K K   KT EE+C+E  +E++ELS  KD
Sbjct: 53  KALADEKKETKLREQEELLNKVEKVALSTEKGKTK---KTTEEYCKEFEREVEELSPFKD 112

Query: 104 DAL----KLRKKR 113
           + +    K++K R
Sbjct: 113 EEVVKPPKIKKAR 122

The following BLAST results are available for this feature:

BLAST of MELO3C012875 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YPF05_PLAF7	7.1e-06	25.98	Uncharacterized protein PF11_0207 OS=Plasmodium falciparum (isolate 3D7) GN=PF11...	[more]

BLAST of MELO3C012875 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNF9_CUCSA	4.2e-13	49.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145900 PE=4 SV=1	[more]

BLAST of MELO3C012875 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083323\|ref\|XP_008442290.1\|	6.7e-20	52.17	PREDICTED: stress response protein NST1-like [Cucumis melo]	[more]
gi\|659130998\|ref\|XP_008465464.1\|	3.5e-13	42.11	PREDICTED: DNA ligase 1-like [Cucumis melo]	[more]
gi\|700206372\|gb\|KGN61491.1\|	6.0e-13	49.45	hypothetical protein Csa_2G145900 [Cucumis sativus]	[more]
gi\|659123312\|ref\|XP_008461598.1\|	5.1e-12	39.81	PREDICTED: PERQ amino acid-rich with GYF domain-containing protein 2-like [Cucum...	[more]
gi\|659109371\|ref\|XP_008454680.1\|	4.2e-06	45.21	PREDICTED: uncharacterized protein LOC103495036 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012875T1	MELO3C012875T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 19..39 score: -coord: 88..108 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012875	Watermelon (97103) v2	mewmbB335
MELO3C012875	Watermelon (97103) v2	mewmbB349
MELO3C012875	Wax gourd	mewgoB396
MELO3C012875	Wax gourd	mewgoB401
MELO3C012875	Melon (DHL92) v3.5.1	memeB140
MELO3C012875	Cucurbita maxima (Rimu)	cmameB471
MELO3C012875	Cucurbita maxima (Rimu)	cmameB568
MELO3C012875	Cucurbita moschata (Rifu)	cmomeB461
MELO3C012875	Cucurbita moschata (Rifu)	cmomeB557
MELO3C012875	Wild cucumber (PI 183967)	cpimeB203
MELO3C012875	Wild cucumber (PI 183967)	cpimeB210
MELO3C012875	Cucumber (Chinese Long) v2	cumeB213
MELO3C012875	Cucumber (Chinese Long) v2	cumeB219
MELO3C012875	Watermelon (Charleston Gray)	mewcgB346
MELO3C012875	Watermelon (97103) v1	mewmB357
MELO3C012875	Watermelon (97103) v1	mewmB371
MELO3C012875	Cucurbita pepo (Zucchini)	cpemeB231
MELO3C012875	Cucurbita pepo (Zucchini)	cpemeB690
MELO3C012875	Bottle gourd (USVL1VR-Ls)	lsimeB356
MELO3C012875	Bottle gourd (USVL1VR-Ls)	lsimeB358
MELO3C012875	Cucumber (Gy14) v2	cgybmeB176
MELO3C012875	Silver-seed gourd	carmeB0744
MELO3C012875	Silver-seed gourd	carmeB0772
MELO3C012875	Cucumber (Chinese Long) v3	cucmeB209
MELO3C012875	Cucumber (Chinese Long) v3	cucmeB215