MELO3C012841 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C012841
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionAcyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
Locationchr4 : 12928326 .. 12928712 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATAAAGATGAAGAAGAGAAAGAGGAAGATTATGTCCCACTAAAACGCAAAAGAAAAGGTGAGGAGGACACCTCTAAATTAAAGAGAGTAAAATCTGTTAAGGCCAGGGACTTTGAGGAAACTTTGTCGCCTGCGTCCACAAAGAGTCCCAAGAAAAATAAGCCTACCGATCTTCCCTCGCCCAATAAATCCAAATCCTTCAAAGCCACTAGCTCTCAAACTCCCACTAAATGCACAATGCCTCCACCACCTTTCGAAAAATCCAAATCGCTAATCCTATCCCAAGAAATCCAAAATACCTCTTCCTCACCTAGGCAAGAAACTAATAAAAATCTTGCTATTGTTGTACATACCAAGGAAGGAACCTCCACTCTACAATAA

mRNA sequence

ATGGATGATAAAGATGAAGAAGAGAAAGAGGAAGATTATGTCCCACTAAAACGCAAAAGAAAAGGTGAGGAGGACACCTCTAAATTAAAGAGAGTAAAATCTGTTAAGGCCAGGGACTTTGAGGAAACTTTGTCGCCTGCGTCCACAAAGAGTCCCAAGAAAAATAAGCCTACCGATCTTCCCTCGCCCAATAAATCCAAATCCTTCAAAGCCACTAGCTCTCAAACTCCCACTAAATGCACAATGCCTCCACCACCTTTCGAAAAATCCAAATCGCTAATCCTATCCCAAGAAATCCAAAATACCTCTTCCTCACCTAGGCAAGAAACTAATAAAAATCTTGCTATTGTTGTACATACCAAGGAAGGAACCTCCACTCTACAATAA

Coding sequence (CDS)

ATGGATGATAAAGATGAAGAAGAGAAAGAGGAAGATTATGTCCCACTAAAACGCAAAAGAAAAGGTGAGGAGGACACCTCTAAATTAAAGAGAGTAAAATCTGTTAAGGCCAGGGACTTTGAGGAAACTTTGTCGCCTGCGTCCACAAAGAGTCCCAAGAAAAATAAGCCTACCGATCTTCCCTCGCCCAATAAATCCAAATCCTTCAAAGCCACTAGCTCTCAAACTCCCACTAAATGCACAATGCCTCCACCACCTTTCGAAAAATCCAAATCGCTAATCCTATCCCAAGAAATCCAAAATACCTCTTCCTCACCTAGGCAAGAAACTAATAAAAATCTTGCTATTGTTGTACATACCAAGGAAGGAACCTCCACTCTACAATAA

Protein sequence

MDDKDEEEKEEDYVPLKRKRKGEEDTSKLKRVKSVKARDFEETLSPASTKSPKKNKPTDLPSPNKSKSFKATSSQTPTKCTMPPPPFEKSKSLILSQEIQNTSSSPRQETNKNLAIVVHTKEGTSTLQ*
Homology
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BLAST of MELO3C012841 vs. NCBI nr
Match: gi|659123193|ref|XP_008461541.1| (PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 8.2e-29
Identity = 70/108 (64.81%), Postives = 83/108 (76.85%), Query Frame = 1 

Query: 1   MDDKDEEEKEEDYVPLKRKRKGEEDTSKLKRVKSVKARDFEETLSPASTKSPKKNKPTDL 60
           +DD+DEEEKE+D VPLKRKR+GEE+    K++K+ K +D +E      TKSPKK K T+L
Sbjct: 49  VDDEDEEEKEKDDVPLKRKRQGEEEALGSKKIKTFKDKDSKENFLSTFTKSPKKKKLTNL 108

Query: 61  PSPNKSKSFKATSSQTPTKCTMPPPPFEKSKSLILSQEIQNTSSSPRQ 109
           PS NK KS KATSSQTPTK   PPPP +KSKS  +SQEIQNTSSSPRQ
Sbjct: 109 PSLNKYKSSKATSSQTPTKSKTPPPPPKKSKSPTISQEIQNTSSSPRQ 156

The following BLAST results are available for this feature:
BLAST of MELO3C012841 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123193|ref|XP_008461541.1|8.2e-2964.81PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012841T1MELO3C012841T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C012841Wax gourdmewgoB396
MELO3C012841Wax gourdmewgoB390
MELO3C012841Wax gourdmewgoB401
MELO3C012841Melon (DHL92) v3.5.1memeB138
MELO3C012841Melon (DHL92) v3.5.1memeB140
MELO3C012841Cucumber (Gy14) v1cgymeB234
MELO3C012841Cucumber (Gy14) v1cgymeB433
MELO3C012841Cucumber (Gy14) v1cgymeB623
MELO3C012841Cucurbita maxima (Rimu)cmameB233
MELO3C012841Cucurbita maxima (Rimu)cmameB471
MELO3C012841Cucurbita maxima (Rimu)cmameB568
MELO3C012841Cucurbita maxima (Rimu)cmameB843
MELO3C012841Cucurbita moschata (Rifu)cmomeB220
MELO3C012841Cucurbita moschata (Rifu)cmomeB461
MELO3C012841Cucurbita moschata (Rifu)cmomeB557
MELO3C012841Cucurbita moschata (Rifu)cmomeB826
MELO3C012841Wild cucumber (PI 183967)cpimeB126
MELO3C012841Wild cucumber (PI 183967)cpimeB210
MELO3C012841Wild cucumber (PI 183967)cpimeB217
MELO3C012841Cucumber (Chinese Long) v2cumeB124
MELO3C012841Cucumber (Chinese Long) v2cumeB219
MELO3C012841Cucumber (Chinese Long) v2cumeB225
MELO3C012841Watermelon (Charleston Gray)mewcgB335
MELO3C012841Watermelon (Charleston Gray)mewcgB341
MELO3C012841Watermelon (Charleston Gray)mewcgB346
MELO3C012841Watermelon (97103) v1mewmB357
MELO3C012841Watermelon (97103) v1mewmB371
MELO3C012841Watermelon (97103) v1mewmB390
MELO3C012841Cucurbita pepo (Zucchini)cpemeB231
MELO3C012841Cucurbita pepo (Zucchini)cpemeB309
MELO3C012841Cucurbita pepo (Zucchini)cpemeB577
MELO3C012841Cucurbita pepo (Zucchini)cpemeB690
MELO3C012841Cucurbita pepo (Zucchini)cpemeB803
MELO3C012841Bottle gourd (USVL1VR-Ls)lsimeB022
MELO3C012841Bottle gourd (USVL1VR-Ls)lsimeB356
MELO3C012841Bottle gourd (USVL1VR-Ls)lsimeB358
MELO3C012841Cucumber (Gy14) v2cgybmeB109
MELO3C012841Cucumber (Gy14) v2cgybmeB183
MELO3C012841Cucumber (Gy14) v2cgybmeB187
MELO3C012841Silver-seed gourdcarmeB0744
MELO3C012841Silver-seed gourdcarmeB0772
MELO3C012841Silver-seed gourdcarmeB1045
MELO3C012841Cucumber (Chinese Long) v3cucmeB128
MELO3C012841Cucumber (Chinese Long) v3cucmeB215
MELO3C012841Cucumber (Chinese Long) v3cucmeB221
MELO3C012841Watermelon (97103) v2mewmbB335
MELO3C012841Watermelon (97103) v2mewmbB343
MELO3C012841Watermelon (97103) v2mewmbB349