MELO3C012840 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012840
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	LRR and NB-ARC domains-containing disease resistance protein
Location	chr4 : 12927216 .. 12927467 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGGCATTAAGGCCTTGGTGCAAGAGAGGAAGGAATCAAAGCTAAGGAAGCTTGAGCTTCTTAGCAAGGTGGAGAAAGTAGCCCTCTTTGTAGAGAAGGGCAAAGGCAAAAAGAAAACTTTTGATGAACACTGTGAGAAGCTTGAGAAAGAAATTGAGGAATTAAGTTCTTTGGAGGACGAGGCATCAAGACCGGCAAAAAAAGAGGAAAGTCACAATGAAAAAGAAGGTCTTGAGAGTGCAATTTGA

mRNA sequence

ATGCATGGCATTAAGGCCTTGGTGCAAGAGAGGAAGGAATCAAAGCTAAGGAAGCTTGAGCTTCTTAGCAAGGTGGAGAAAGTAGCCCTCTTTGTAGAGAAGGGCAAAGGCAAAAAGAAAACTTTTGATGAACACTGTGAGAAGCTTGAGAAAGAAATTGAGGAATTAAGTTCTTTGGAGGACGAGGCATCAAGACCGGCAAAAAAAGAGGAAAGTCACAATGAAAAAGAAGGTCTTGAGAGTGCAATTTGA

Coding sequence (CDS)

ATGCATGGCATTAAGGCCTTGGTGCAAGAGAGGAAGGAATCAAAGCTAAGGAAGCTTGAGCTTCTTAGCAAGGTGGAGAAAGTAGCCCTCTTTGTAGAGAAGGGCAAAGGCAAAAAGAAAACTTTTGATGAACACTGTGAGAAGCTTGAGAAAGAAATTGAGGAATTAAGTTCTTTGGAGGACGAGGCATCAAGACCGGCAAAAAAAGAGGAAAGTCACAATGAAAAAGAAGGTCTTGAGAGTGCAATTTGA

Protein sequence

MHGIKALVQERKESKLRKLELLSKVEKVALFVEKGKGKKKTFDEHCEKLEKEIEELSSLEDEASRPAKKEESHNEKEGLESAI*

Homology

[Close]

BLAST of MELO3C012840 vs. TrEMBL
Match: A0A0A0L7S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418760 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-07
Identity = 31/55 (56.36%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 9   QERKESKLRKLE-LLSKVEKVALFVEKGKGKKKTFDEHCEKLEKEIEELSSLEDE 63
           QE+KE +L++ E LL+KV+KV LFV+KGK K+   +E CE+LEK++E+LS +EDE
Sbjct: 55  QEKKEMRLKEQEELLNKVDKVTLFVKKGKAKRTQSEEICEELEKKLEDLSPVEDE 109

[Close]

BLAST of MELO3C012840 vs. TrEMBL
Match: A0A0A0K7W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-07
Identity = 30/67 (44.78%), Postives = 50/67 (74.63%), Query Frame = 1


Query: 5  KALVQERKESKLRKL-ELLSKVEKVALFVEKGKGKKKTFDEHCEKLEKEIEELSSLEDEA 64
          KAL+Q++K+ KLR+  ELL+K+++  +  +KGK +K   +E CE+ E+++E+LS LEDE 
Sbjct: 6  KALMQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEV 65

Query: 65 SRPAKKE 71
           +P KK+
Sbjct: 66 VKPLKKK 72

[Close]

BLAST of MELO3C012840 vs. TrEMBL
Match: A0A0A0LNF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145900 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.2e-07
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 1


Query: 2  HGIKALVQERKESKLRKLELL-SKVEKVALFVEKGKGKKKTF--DEHCEKLEKEIEELSS 61
          HGIKAL QE++E+ LR+ E L SK ++VAL VEK K K+K     E  E+LEKEI  +SS
Sbjct: 12 HGIKALAQEKQETNLREWEELHSKDDEVALSVEKDKEKEKEKGDQEIAEELEKEIGHMSS 71

Query: 62 LEDEASRPAKK 70
          LE+EA R  K+
Sbjct: 72 LEEEAPRRQKR 82

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BLAST of MELO3C012840 vs. NCBI nr
Match: gi|659130998|ref|XP_008465464.1| (PREDICTED: DNA ligase 1-like [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 5.9e-12
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 1


Query: 3   GIKALVQERKESKLR-KLELLSKVEKVALFVEKGKGKKKTFDEHCEKLEKEIEELSSLED 62
           GIKAL +E+KE KLR K ELL+KV+KVAL VEK K ++KTF+EHCE+ +KEIEELS LED
Sbjct: 53  GIKALEEEKKEIKLREKEELLNKVDKVALSVEKRK-EEKTFEEHCEEFKKEIEELSPLED 112

Query: 63  EASRPAKKEE 72
           E    + K++
Sbjct: 113 EVVEKSSKKK 121

[Close]

BLAST of MELO3C012840 vs. NCBI nr
Match: gi|659083323|ref|XP_008442290.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 6.1e-09
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 1


Query: 6   ALVQERKESKLRKLE-LLSKVEKVALFVEKGKGKKKTFDEHCEKLEKEIEELSSLEDE-A 65
           AL + +KE KLR+ E LL+KV+K+AL VEKGK K+KTF+E  ++ EKEI+E S LED   
Sbjct: 36  ALAEGKKEIKLRQPEELLNKVDKLALSVEKGKEKEKTFEEFYKEFEKEIDEFSPLEDNVV 95

Query: 66  SRPAKKEESHNEKEGL 80
            RPAKK     +K+ L
Sbjct: 96  ERPAKKRNVTMKKKVL 111

[Close]

BLAST of MELO3C012840 vs. NCBI nr
Match: gi|659123312|ref|XP_008461598.1| (PREDICTED: PERQ amino acid-rich with GYF domain-containing protein 2-like [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 8.0e-09
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 1


Query: 3   GIKALVQERKESKLRKLE-LLSKVEKVALFVEKGKGKKKTFDEHCEKLEKEIEELSSLED 62
           G+KAL +E+KES LR+ E LL++V+K+AL V K KGK+KT D + ++ EKE+EE  SLED
Sbjct: 69  GVKALAEEKKESMLREREELLNEVDKMALLVNKSKGKEKTTDGYDKEFEKELEEFISLED 128

Query: 63  EA--SRPAKKEESHNE 76
                +P KK  S  +
Sbjct: 129 GVVEKQPKKKRASEGQ 144

[Close]

BLAST of MELO3C012840 vs. NCBI nr
Match: gi|659109371|ref|XP_008454680.1| (PREDICTED: uncharacterized protein LOC103495036 [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 5   KALVQERKESKLRKL-ELLSKVEKVALFVEKGKGKKKTFDEHCEKLEKEIEELSSLEDE 63
           KAL  E+KE+KLR+  ELL+KVEKVAL  EKGK  KKT +E+C++ E+E+EELS  +DE
Sbjct: 53  KALADEKKETKLREQEELLNKVEKVALSTEKGK-TKKTTEEYCKEFEREVEELSPFKDE 110

[Close]

BLAST of MELO3C012840 vs. NCBI nr
Match: gi|659090014|ref|XP_008445787.1| (PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1


Query: 9   QERKESKLRKLE-LLSKVEKVALFVEKGKGKKKTFDEHCEKLEKEIEELSSLEDEASRPA 68
           +E+KE+KLR+ E LL KV+ VAL  EK K ++K F+ H E+ EKEI++L  LE++  RPA
Sbjct: 91  REKKETKLREREELLGKVDNVALSAEKDKCEEKNFEVHYEEFEKEIDKLCPLEEKVIRPA 150

Query: 69  KKEESHNEKEGL 80
           KK     +K+ L
Sbjct: 151 KKRTFTMKKKAL 162

The following BLAST results are available for this feature:

BLAST of MELO3C012840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7S0_CUCSA	2.3e-07	56.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G418760 PE=4 SV=1	[more]
A0A0A0K7W9_CUCSA	4.0e-07	44.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G290550 PE=4 SV=1	[more]
A0A0A0LNF9_CUCSA	5.2e-07	54.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145900 PE=4 SV=1	[more]

BLAST of MELO3C012840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130998\|ref\|XP_008465464.1\|	5.9e-12	62.86	PREDICTED: DNA ligase 1-like [Cucumis melo]	[more]
gi\|659083323\|ref\|XP_008442290.1\|	6.1e-09	53.95	PREDICTED: stress response protein NST1-like [Cucumis melo]	[more]
gi\|659123312\|ref\|XP_008461598.1\|	8.0e-09	50.00	PREDICTED: PERQ amino acid-rich with GYF domain-containing protein 2-like [Cucum...	[more]
gi\|659109371\|ref\|XP_008454680.1\|	3.0e-08	61.02	PREDICTED: uncharacterized protein LOC103495036 [Cucumis melo]	[more]
gi\|659090014\|ref\|XP_008445787.1\|	1.5e-07	48.61	PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012840T1	MELO3C012840T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 39..62 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012840	Wax gourd	mewgoB396
MELO3C012840	Wax gourd	mewgoB390
MELO3C012840	Wax gourd	mewgoB401
MELO3C012840	Melon (DHL92) v3.5.1	memeB138
MELO3C012840	Melon (DHL92) v3.5.1	memeB140
MELO3C012840	Cucumber (Gy14) v1	cgymeB234
MELO3C012840	Cucumber (Gy14) v1	cgymeB433
MELO3C012840	Cucumber (Gy14) v1	cgymeB623
MELO3C012840	Cucurbita maxima (Rimu)	cmameB233
MELO3C012840	Cucurbita maxima (Rimu)	cmameB471
MELO3C012840	Cucurbita maxima (Rimu)	cmameB568
MELO3C012840	Cucurbita maxima (Rimu)	cmameB843
MELO3C012840	Cucurbita moschata (Rifu)	cmomeB220
MELO3C012840	Cucurbita moschata (Rifu)	cmomeB461
MELO3C012840	Cucurbita moschata (Rifu)	cmomeB557
MELO3C012840	Cucurbita moschata (Rifu)	cmomeB826
MELO3C012840	Wild cucumber (PI 183967)	cpimeB126
MELO3C012840	Wild cucumber (PI 183967)	cpimeB210
MELO3C012840	Wild cucumber (PI 183967)	cpimeB217
MELO3C012840	Cucumber (Chinese Long) v2	cumeB124
MELO3C012840	Cucumber (Chinese Long) v2	cumeB219
MELO3C012840	Cucumber (Chinese Long) v2	cumeB225
MELO3C012840	Watermelon (Charleston Gray)	mewcgB335
MELO3C012840	Watermelon (Charleston Gray)	mewcgB341
MELO3C012840	Watermelon (Charleston Gray)	mewcgB346
MELO3C012840	Watermelon (97103) v1	mewmB357
MELO3C012840	Watermelon (97103) v1	mewmB371
MELO3C012840	Watermelon (97103) v1	mewmB390
MELO3C012840	Cucurbita pepo (Zucchini)	cpemeB231
MELO3C012840	Cucurbita pepo (Zucchini)	cpemeB309
MELO3C012840	Cucurbita pepo (Zucchini)	cpemeB577
MELO3C012840	Cucurbita pepo (Zucchini)	cpemeB690
MELO3C012840	Cucurbita pepo (Zucchini)	cpemeB803
MELO3C012840	Bottle gourd (USVL1VR-Ls)	lsimeB022
MELO3C012840	Bottle gourd (USVL1VR-Ls)	lsimeB356
MELO3C012840	Bottle gourd (USVL1VR-Ls)	lsimeB358
MELO3C012840	Cucumber (Gy14) v2	cgybmeB109
MELO3C012840	Cucumber (Gy14) v2	cgybmeB183
MELO3C012840	Cucumber (Gy14) v2	cgybmeB187
MELO3C012840	Silver-seed gourd	carmeB0744
MELO3C012840	Silver-seed gourd	carmeB0772
MELO3C012840	Silver-seed gourd	carmeB1045
MELO3C012840	Cucumber (Chinese Long) v3	cucmeB128
MELO3C012840	Cucumber (Chinese Long) v3	cucmeB215
MELO3C012840	Cucumber (Chinese Long) v3	cucmeB221
MELO3C012840	Watermelon (97103) v2	mewmbB335
MELO3C012840	Watermelon (97103) v2	mewmbB343
MELO3C012840	Watermelon (97103) v2	mewmbB349