MELO3C012830.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C012830.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr04 : 12788914 .. 12789479 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAGAAGATGCCAGAACGTAACATCCAGGCTTCAACTATTGATTGTCAGACAAAGACCCTAAAGAGAATGTTCCAGGACATAGCAGAAATGTTCGGCCCGTTGTGCAATGGGTTTGATTGGAACGTTGAACTCAAGTGCATCATCGTAGAGAAGGAATTGTCCGACAATTGGGTACAGTTAGGTTATTAGTTCTGTAGACAATTATTCATTTTTAATATAAAATAAAATAAAAATTTACTATAACACTTGAACATAATCATCCTGTTGCCAAGGGTCTCCTAAACAAATCCTTTCCCCATTACGACGACTTGTGCTACATATTTGGGAAAGATCGTGCGATAGTAGAGCACGCAAAGACATTCACCAATGCAGGGTTGAATGTGTTTGAAGGGTACGAGGGATTTTTCACTGACGATAGAAATGATATGGAGATCCTTATGATGTATAGTCAGAGACTAGGCATGTCGCCTGACGACATCATGGGCACACGATCCGATAACTCAAGTGATGGTAGGATTAGTTCAAGCGAGTCAAAGAGGAAGCAGGAGGCCAAGCGATAG

mRNA sequence

ATGGCTGAGAAGATGCCAGAACGTAACATCCAGGCTTCAACTATTGATTGTCAGACAAAGACCCTAAAGAGAATGTTCCAGGACATAGCAGAAATGTTCGGCCCGTTGTGCAATGGGTTTGATTGGAACGTTGAACTCAAGTGCATCATCGTAGAGAAGGAATTGTCCGACAATTGGGGTCTCCTAAACAAATCCTTTCCCCATTACGACGACTTGTGCTACATATTTGGGAAAGATCGTGCGATAGTAGAGCACGCAAAGACATTCACCAATGCAGGGTTGAATGTGTTTGAAGGGTACGAGGGATTTTTCACTGACGATAGAAATGATATGGAGATCCTTATGATGTATAGTCAGAGACTAGGCATGTCGCCTGACGACATCATGGGCACACGATCCGATAACTCAAGTGATGGTAGGATTAGTTCAAGCGAGTCAAAGAGGAAGCAGGAGGCCAAGCGATAG

Coding sequence (CDS)

ATGGCTGAGAAGATGCCAGAACGTAACATCCAGGCTTCAACTATTGATTGTCAGACAAAGACCCTAAAGAGAATGTTCCAGGACATAGCAGAAATGTTCGGCCCGTTGTGCAATGGGTTTGATTGGAACGTTGAACTCAAGTGCATCATCGTAGAGAAGGAATTGTCCGACAATTGGGGTCTCCTAAACAAATCCTTTCCCCATTACGACGACTTGTGCTACATATTTGGGAAAGATCGTGCGATAGTAGAGCACGCAAAGACATTCACCAATGCAGGGTTGAATGTGTTTGAAGGGTACGAGGGATTTTTCACTGACGATAGAAATGATATGGAGATCCTTATGATGTATAGTCAGAGACTAGGCATGTCGCCTGACGACATCATGGGCACACGATCCGATAACTCAAGTGATGGTAGGATTAGTTCAAGCGAGTCAAAGAGGAAGCAGGAGGCCAAGCGATAG

Protein sequence

MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNWGLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR
Homology
[Close]
BLAST of MELO3C012830.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 149.8 bits (377), Expect = 7.4e-33
Identity = 81/156 (51.92%), Postives = 100/156 (64.10%), Query Frame = 0 

Query: 1   MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW- 60
           MA K+P  NI ASTID + K +KRMF  +AEM GP C+GF WN E KCI+ EKE+ D+W 
Sbjct: 407 MAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWS 466

Query: 61  -----GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDMEIL 120
                GLLNKSF HYD+L Y+FGKDRA    A++F + G N   GY+    D   D +  
Sbjct: 467 HPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFP 526

Query: 121 MMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQ 151
            MYS  L MSPDD+M TR+   S+ R  SS SKRK+
Sbjct: 527 PMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKR 562

[Close]
BLAST of MELO3C012830.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 7.4e-33
Identity = 81/164 (49.39%), Postives = 108/164 (65.85%), Query Frame = 0 

Query: 1   MAEKMPERNIQ-ASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW 60
           MAEK+P  NIQ +STIDC  K+LK+ +  IAEM GP C+GF WN E +CII E++L D+W
Sbjct: 52  MAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSW 111

Query: 61  --------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFF-TDDRND 120
                   GLL+KSFP+YDDL Y+FGKDRA    ++TF N G NV   +       D +D
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHD 171

Query: 121 MEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR 155
            +I  MYSQ + MSPD++ G R+  +S+ R  SS SKRK+ ++R
Sbjct: 172 EDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSER 215

[Close]
BLAST of MELO3C012830.2 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 1.3e-32
Identity = 75/141 (53.19%), Postives = 92/141 (65.25%), Query Frame = 0 

Query: 1   MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW- 60
           MA K+P  NI ASTID + K +KRMF  +AEM GP C+GF WN E KCI+ EKE+ D+W 
Sbjct: 48  MAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWV 107

Query: 61  -------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDME 120
                  GLLNKSF HYD+L Y+FGKDRA    A++F + G N   GY+ F  D   D +
Sbjct: 108 KSHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTD 167

Query: 121 ILMMYSQRLGMSPDDIMGTRS 134
              MYS RL MSPDD+M TR+
Sbjct: 168 FPPMYSLRLNMSPDDLMETRT 188

[Close]
BLAST of MELO3C012830.2 vs. NCBI nr
Match: XP_008459131.1 (PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 1.1e-31
Identity = 81/150 (54.00%), Postives = 95/150 (63.33%), Query Frame = 0 

Query: 1   MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSD-NW 60
           MA K+P  NI ASTID + K LKRMF  +AEM GP C+GF WN E KCI+ EKE      
Sbjct: 48  MAFKIPGCNIHASTIDSRIKLLKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKESHPAAK 107

Query: 61  GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDMEILMMYSQ 120
           GLLNKSF HYD+L Y+FGKDRA    A+ F + G N   GY+ F  D   D     MYS 
Sbjct: 108 GLLNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDPAGYDAFVADAAPDTNFSPMYSP 167

Query: 121 RLGMSPDDIMGTRSDNSSDGRISSSESKRK 150
           RL MSPDD+M TR+   S+ R  SS S+RK
Sbjct: 168 RLNMSPDDLMETRTARVSERRNVSSGSRRK 197

[Close]
BLAST of MELO3C012830.2 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 123.2 bits (308), Expect = 7.5e-25
Identity = 71/164 (43.29%), Postives = 96/164 (58.54%), Query Frame = 0 

Query: 1   MAEKMPERNIQAST-IDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW 60
           MAEK+    ++A+T IDC+ KTLKR FQ IAEM GP C+GF WN E KCI+ EKEL DNW
Sbjct: 369 MAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDNW 428

Query: 61  --------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLN-VFEGYEGFFTDDRND 120
                   GLLN  FP+YD+L Y+FG+DRA    A+TF + G N    GY+ F   D N+
Sbjct: 429 VRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 488

Query: 121 MEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR 155
            +   +YS+ + +  DD+  +R               RK+ ++R
Sbjct: 489 -DFPPVYSRGVDILQDDVRASRPSXXXXXXXXXXXXXRKRGSQR 531

[Close]
BLAST of MELO3C012830.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.9e-33
Identity = 81/164 (49.39%), Postives = 108/164 (65.85%), Query Frame = 0 

Query: 1   MAEKMPERNIQ-ASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW 60
           MAEK+P  NIQ +STIDC  K+LK+ +  IAEM GP C+GF WN E +CII E++L D+W
Sbjct: 52  MAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSW 111

Query: 61  --------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFF-TDDRND 120
                   GLL+KSFP+YDDL Y+FGKDRA    ++TF N G NV   +       D +D
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHD 171

Query: 121 MEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR 155
            +I  MYSQ + MSPD++ G R+  +S+ R  SS SKRK+ ++R
Sbjct: 172 EDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSER 215

[Close]
BLAST of MELO3C012830.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.9e-33
Identity = 81/156 (51.92%), Postives = 100/156 (64.10%), Query Frame = 0 

Query: 1   MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW- 60
           MA K+P  NI ASTID + K +KRMF  +AEM GP C+GF WN E KCI+ EKE+ D+W 
Sbjct: 407 MAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWS 466

Query: 61  -----GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDMEIL 120
                GLLNKSF HYD+L Y+FGKDRA    A++F + G N   GY+    D   D +  
Sbjct: 467 HPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFP 526

Query: 121 MMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQ 151
            MYS  L MSPDD+M TR+   S+ R  SS SKRK+
Sbjct: 527 PMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKR 562

[Close]
BLAST of MELO3C012830.2 vs. TrEMBL
Match: tr|A0A1S3CTN6|A0A1S3CTN6_CUCME (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.4e-33
Identity = 75/141 (53.19%), Postives = 92/141 (65.25%), Query Frame = 0 

Query: 1   MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW- 60
           MA K+P  NI ASTID + K +KRMF  +AEM GP C+GF WN E KCI+ EKE+ D+W 
Sbjct: 48  MAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWV 107

Query: 61  -------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDME 120
                  GLLNKSF HYD+L Y+FGKDRA    A++F + G N   GY+ F  D   D +
Sbjct: 108 KSHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAMPDTD 167

Query: 121 ILMMYSQRLGMSPDDIMGTRS 134
              MYS RL MSPDD+M TR+
Sbjct: 168 FPPMYSLRLNMSPDDLMETRT 188

[Close]
BLAST of MELO3C012830.2 vs. TrEMBL
Match: tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME (uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.1e-32
Identity = 81/150 (54.00%), Postives = 95/150 (63.33%), Query Frame = 0 

Query: 1   MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSD-NW 60
           MA K+P  NI ASTID + K LKRMF  +AEM GP C+GF WN E KCI+ EKE      
Sbjct: 48  MAFKIPGCNIHASTIDSRIKLLKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKESHPAAK 107

Query: 61  GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDMEILMMYSQ 120
           GLLNKSF HYD+L Y+FGKDRA    A+ F + G N   GY+ F  D   D     MYS 
Sbjct: 108 GLLNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDPAGYDAFVADAAPDTNFSPMYSP 167

Query: 121 RLGMSPDDIMGTRSDNSSDGRISSSESKRK 150
           RL MSPDD+M TR+   S+ R  SS S+RK
Sbjct: 168 RLNMSPDDLMETRTARVSERRNVSSGSRRK 197

[Close]
BLAST of MELO3C012830.2 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.9e-25
Identity = 71/164 (43.29%), Postives = 96/164 (58.54%), Query Frame = 0 

Query: 1   MAEKMPERNIQAST-IDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW 60
           MAEK+    ++A+T IDC+ KTLKR FQ IAEM GP C+GF WN E KCI+ EKEL DNW
Sbjct: 369 MAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDNW 428

Query: 61  --------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLN-VFEGYEGFFTDDRND 120
                   GLLN  FP+YD+L Y+FG+DRA    A+TF + G N    GY+ F   D N+
Sbjct: 429 VRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 488

Query: 121 MEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR 155
            +   +YS+ + +  DD+  +R               RK+ ++R
Sbjct: 489 -DFPPVYSRGVDILQDDVRASRPSXXXXXXXXXXXXXRKRGSQR 531

The following BLAST results are available for this feature:
BLAST of MELO3C012830.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN34114.17.4e-3351.92retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008441954.17.4e-3349.39PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
XP_008466949.11.3e-3253.19PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo][more]
XP_008459131.11.1e-3154.00PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo][more]
ADN33754.17.5e-2543.29retrotransposon protein [Cucumis melo subsp. melo][more]
BLAST of MELO3C012830.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C012830.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C012830.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME4.9e-3349.39uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
tr|E5GCB5|E5GCB5_CUCME4.9e-3351.92Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3CTN6|A0A1S3CTN6_CUCME8.4e-3353.19uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=... [more]
tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME7.1e-3254.00uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=... [more]
tr|E5GBB2|E5GBB2_CUCME4.9e-2543.29Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012830.2.1MELO3C012830.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..154

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C012830.2Wax gourdmedwgoB402
MELO3C012830.2Cucumber (Gy14) v2cgybmedB188
MELO3C012830.2Cucumber (Gy14) v2cgybmedB184
MELO3C012830.2Cucumber (Gy14) v1cgymedB231
MELO3C012830.2Cucumber (Gy14) v1cgymedB428
MELO3C012830.2Cucurbita maxima (Rimu)cmamedB265
MELO3C012830.2Cucurbita maxima (Rimu)cmamedB545
MELO3C012830.2Cucurbita maxima (Rimu)cmamedB648
MELO3C012830.2Cucurbita moschata (Rifu)cmomedB249
MELO3C012830.2Cucurbita moschata (Rifu)cmomedB532
MELO3C012830.2Cucurbita moschata (Rifu)cmomedB636
MELO3C012830.2Cucurbita pepo (Zucchini)cpemedB270
MELO3C012830.2Cucurbita pepo (Zucchini)cpemedB684
MELO3C012830.2Cucurbita pepo (Zucchini)cpemedB822
MELO3C012830.2Cucumber (Chinese Long) v2cumedB210
MELO3C012830.2Wild cucumber (PI 183967)cpimedB204
MELO3C012830.2Wild cucumber (PI 183967)cpimedB211
MELO3C012830.2Cucumber (Chinese Long) v2cumedB205
MELO3C012830.2Melon (DHL92) v3.6.1medmedB135
MELO3C012830.2Bottle gourd (USVL1VR-Ls)lsimedB370
MELO3C012830.2Bottle gourd (USVL1VR-Ls)lsimedB373
MELO3C012830.2Watermelon (Charleston Gray)medwcgB329
MELO3C012830.2Watermelon (Charleston Gray)medwcgB342
MELO3C012830.2Watermelon (97103) v1medwmB355
MELO3C012830.2Watermelon (97103) v1medwmB367
MELO3C012830.2Silver-seed gourdcarmedB0757
MELO3C012830.2Silver-seed gourdcarmedB0785
MELO3C012830.2Cucumber (Chinese Long) v3cucmedB209
MELO3C012830.2Cucumber (Chinese Long) v3cucmedB214
MELO3C012830.2Watermelon (97103) v2medwmbB323
MELO3C012830.2Watermelon (97103) v2medwmbB337