MELO3C012830 (gene) Melon (DHL92) v3.5.1

NameMELO3C012830
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein
Locationchr4 : 12784820 .. 12785385 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAGAAGATGCCAGAACGTAACATCCAGGCTTCAACTATTGATTGTCAGACAAAGACCCTAAAGAGAATGTTCCAGGACATAGCAGAAATGTTCGGCCCGTTGTGCAATGGGTTTGATTGGAACGTTGAACTCAAGTGCATCATCGTAGAGAAGGAATTGTCCGACAATTGGGTACAGTTAGGTTATTAGTTCTGTAGACAATTATTCATTTTTAATATAAAATAAAATAAAAATTTACTATAACACTTGAACATAATCATCCTGTTGCCAAGGGTCTCCTAAACAAATCCTTTCCCCATTACGACGACTTGTGCTACATATTTGGGAAAGATCGTGCGATAGTAGAGCACGCAAAGACATTCACCAATGCAGGGTTGAATGTGTTTGAAGGGTACGAGGGATTTTTCACTGACGATAGAAATGATATGGAGATCCTTATGATGTATAGTCAGAGACTAGGCATGTCGCCTGACGACATCATGGGCACACGATCCGATAACTCAAGTGATGGTAGGATTAGTTCAAGCGAGTCAAAGAGGAAGCAGGAGGCCAAGCGATAG

mRNA sequence

ATGGCTGAGAAGATGCCAGAACGTAACATCCAGGCTTCAACTATTGATTGTCAGACAAAGACCCTAAAGAGAATGTTCCAGGACATAGCAGAAATGTTCGGCCCGTTGTGCAATGGGTTTGATTGGAACGTTGAACTCAAGTGCATCATCGTAGAGAAGGAATTGTCCGACAATTGGGGTCTCCTAAACAAATCCTTTCCCCATTACGACGACTTGTGCTACATATTTGGGAAAGATCGTGCGATAGTAGAGCACGCAAAGACATTCACCAATGCAGGGTTGAATGTGTTTGAAGGGTACGAGGGATTTTTCACTGACGATAGAAATGATATGGAGATCCTTATGATGTATAGTCAGAGACTAGGCATGTCGCCTGACGACATCATGGGCACACGATCCGATAACTCAAGTGATGGTAGGATTAGTTCAAGCGAGTCAAAGAGGAAGCAGGAGGCCAAGCGATAG

Coding sequence (CDS)

ATGGCTGAGAAGATGCCAGAACGTAACATCCAGGCTTCAACTATTGATTGTCAGACAAAGACCCTAAAGAGAATGTTCCAGGACATAGCAGAAATGTTCGGCCCGTTGTGCAATGGGTTTGATTGGAACGTTGAACTCAAGTGCATCATCGTAGAGAAGGAATTGTCCGACAATTGGGGTCTCCTAAACAAATCCTTTCCCCATTACGACGACTTGTGCTACATATTTGGGAAAGATCGTGCGATAGTAGAGCACGCAAAGACATTCACCAATGCAGGGTTGAATGTGTTTGAAGGGTACGAGGGATTTTTCACTGACGATAGAAATGATATGGAGATCCTTATGATGTATAGTCAGAGACTAGGCATGTCGCCTGACGACATCATGGGCACACGATCCGATAACTCAAGTGATGGTAGGATTAGTTCAAGCGAGTCAAAGAGGAAGCAGGAGGCCAAGCGATAG

Protein sequence

MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNWGLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR*
BLAST of MELO3C012830 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33
Identity = 81/156 (51.92%), Postives = 100/156 (64.10%), Query Frame = 1

Query: 1   MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW- 60
           MA K+P  NI ASTID + K +KRMF  +AEM GP C+GF WN E KCI+ EKE+ D+W 
Sbjct: 407 MAFKIPGSNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWS 466

Query: 61  -----GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDMEIL 120
                GLLNKSF HYD+L Y+FGKDRA    A++F + G N   GY+    D   D +  
Sbjct: 467 HPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFP 526

Query: 121 MMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQ 151
            MYS  L MSPDD+M TR+   S+ R  SS SKRK+
Sbjct: 527 PMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKR 562

BLAST of MELO3C012830 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 9.5e-31
Identity = 77/164 (46.95%), Postives = 105/164 (64.02%), Query Frame = 1

Query: 1   MAEKMPERNIQAST-IDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW 60
           MAEK+    ++A+T IDC+ KTLKR FQ IAEM GP C+GF WN E KCI+ EKEL DNW
Sbjct: 369 MAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAEKELFDNW 428

Query: 61  --------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLN-VFEGYEGFFTDDRND 120
                   GLLN  FP+YD+L Y+FG+DRA    A+TF + G N    GY+ F   D N+
Sbjct: 429 VRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 488

Query: 121 MEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR 155
            +   +YS+ + +  DD+  +R   +S+G+  SS SKRK+ ++R
Sbjct: 489 -DFPPVYSRGVDILQDDVRASRPSRASEGKTGSSGSKRKRGSQR 531

BLAST of MELO3C012830 vs. TrEMBL
Match: A0A0A0KQ83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.3e-15
Identity = 52/139 (37.41%), Postives = 74/139 (53.24%), Query Frame = 1

Query: 10  IQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW--------GL 69
           +  + I+ Q K LK+ FQ I +M  P  +GF+WN ++KCII E+++ DNW        GL
Sbjct: 6   LTTTLIESQIKLLKKTFQTIVKMREPAGSGFEWNGDMKCIIAERDMFDNWVRTYPATKGL 65

Query: 70  LNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDMEILMMYSQRL 129
           LNK FPHY  L Y+FGKD       +    +G    +      T+D   +E   M S R+
Sbjct: 66  LNKVFPHYGMLSYVFGKDHTKGPVWRYSRTSGPTCKDPSACVPTEDGLKIEFPTMCSPRM 125

Query: 130 GMSPDDIMGTRSDNSSDGR 141
            +S DD+M  +S   SD R
Sbjct: 126 NLSLDDMMVGQSGRFSDCR 144

BLAST of MELO3C012830 vs. TrEMBL
Match: A0A0A9TMG5_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.1e-10
Identity = 37/82 (45.12%), Postives = 48/82 (58.54%), Query Frame = 1

Query: 15  IDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW--------GLLNKSF 74
           ID + KTLKR F  I EM  P   GF WN + KCI+ +K++ DNW        GL NK F
Sbjct: 74  IDSRLKTLKRQFHAITEMLEPSAGGFGWNDKDKCIVCDKDIFDNWVKGHPSARGLSNKPF 133

Query: 75  PHYDDLCYIFGKDRAIVEHAKT 89
           P+ + L  +F KDRA  E A++
Sbjct: 134 PYLEKLSIVFVKDRATGEAAES 155

BLAST of MELO3C012830 vs. TrEMBL
Match: A0A072UYX1_MEDTR (Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g075160 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 1

Query: 1   MAEKMPERNIQAST-IDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW 60
           + +K+P+  ++A+  I+ + K LK  +  I +M GP  +GF WN   K I+VEKE+   W
Sbjct: 56  LLKKIPDCTLKANPHIESRVKRLKSHYSAIRDMLGPSASGFGWNDATKTIVVEKEVYRQW 115

Query: 61  --------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDM 114
                   GL  K FPHY+ L  +FGKD+A  + ++   +   N+ +  E F +  RN+ 
Sbjct: 116 CKSHPNATGLFGKPFPHYERLHNVFGKDKACGDTSEDPADHAYNIVK--EFFPSSPRNEF 175

BLAST of MELO3C012830 vs. NCBI nr
Match: gi|659118456|ref|XP_008459129.1| (PREDICTED: uncharacterized protein LOC103498329 [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 2.2e-36
Identity = 84/158 (53.16%), Postives = 101/158 (63.92%), Query Frame = 1

Query: 1   MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW- 60
           MA K+P  N+ ASTID + K LKRMF  IAEM GP C+GF WN E KCI+ EKE+ DNW 
Sbjct: 253 MAFKIPGSNVHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWV 312

Query: 61  -------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDME 120
                  GLL K F HYD+L Y+FGKDRA    A++F + G N   GYE F  +   D  
Sbjct: 313 KSHLAAKGLLTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDTN 372

Query: 121 ILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQ 151
              MYSQ L MSPD++MGTR+   S+GR  SS SKRK+
Sbjct: 373 FQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKR 410

BLAST of MELO3C012830 vs. NCBI nr
Match: gi|659111306|ref|XP_008455685.1| (PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 4.9e-36
Identity = 84/158 (53.16%), Postives = 102/158 (64.56%), Query Frame = 1

Query: 1   MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW- 60
           MA K+P  NI ASTID + K +KRMF  +AEM GP C+GF WN E KCI+ EKE+ D+W 
Sbjct: 226 MAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPTCSGFGWNDEQKCIVTEKEVFDDWV 285

Query: 61  -------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDME 120
                  GLLNKSFPHYD+  Y+FGKDRA    AK+F + G N   GY+ F  D   D +
Sbjct: 286 KSHPVAKGLLNKSFPHYDERLYVFGKDRATGGRAKSFADVGSNNPVGYDAFVADATPDTD 345

Query: 121 ILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQ 151
              MYSQ L MSPDD+MGTR    S+ R  SS SK+K+
Sbjct: 346 FPPMYSQGLNMSPDDLMGTRITRVSERRNVSSGSKQKR 383

BLAST of MELO3C012830 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.8e-35
Identity = 80/156 (51.28%), Postives = 103/156 (66.03%), Query Frame = 1

Query: 1   MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW- 60
           MA K+P  N+ ASTID + K LKRMF  I EM GP C+GF WN E KCI+ EKE+ D+W 
Sbjct: 1   MAFKIPCSNVHASTIDSRIKLLKRMFHAIGEMRGPTCSGFGWNDEQKCIVAEKEVFDDWS 60

Query: 61  -----GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDMEIL 120
                GLLNKSFPHYD+L Y+F KD A    A++F + G N   GY+ F  +  +D +  
Sbjct: 61  HPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDTDFQ 120

Query: 121 MMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQ 151
            MYS+ L MSPD++MGTR+   S+GR  SS SK+K+
Sbjct: 121 PMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKR 156

BLAST of MELO3C012830 vs. NCBI nr
Match: gi|659112453|ref|XP_008456229.1| (PREDICTED: uncharacterized protein LOC103496234 [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 1.6e-34
Identity = 79/158 (50.00%), Postives = 100/158 (63.29%), Query Frame = 1

Query: 1   MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW- 60
           MA K+P   +  STID Q K LKRMF  I EM+GP CNGF WN E KCI+ EKE+ D+W 
Sbjct: 52  MAFKIPNSKVHVSTIDNQIKLLKRMFHAIVEMYGPTCNGFGWNDEQKCIVAEKEVFDDWV 111

Query: 61  -------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDME 120
                  GL NKSF HYD+L Y+F KDRA     ++F + G N   GYE F T   +D +
Sbjct: 112 KSHLAAKGLFNKSFLHYDELSYVFSKDRATGGRTESFADVGSNDPTGYETFATVAASDTD 171

Query: 121 ILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQ 151
              MY+QRL MSP ++MGT++   S+GR  SS SK+K+
Sbjct: 172 FQPMYNQRLNMSPGELMGTKTARVSEGRYVSSGSKQKR 209

BLAST of MELO3C012830 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 1.0e-33
Identity = 81/164 (49.39%), Postives = 108/164 (65.85%), Query Frame = 1

Query: 1   MAEKMPERNIQ-ASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNW 60
           MAEK+P  NIQ +STIDC  K+LK+ +  IAEM GP C+GF WN E +CII E++L D+W
Sbjct: 52  MAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSW 111

Query: 61  --------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFF-TDDRND 120
                   GLL+KSFP+YDDL Y+FGKDRA    ++TF N G NV   +       D +D
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHD 171

Query: 121 MEILMMYSQRLGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR 155
            +I  MYSQ + MSPD++ G R+  +S+ R  SS SKRK+ ++R
Sbjct: 172 EDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSER 215

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GCB5_CUCME1.6e-3351.92Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GBB2_CUCME9.5e-3146.95Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KQ83_CUCSA7.3e-1537.41Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1[more]
A0A0A9TMG5_ARUDO7.1e-1045.12Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
A0A072UYX1_MEDTR1.2e-0933.61Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g075160 ... [more]
Match NameE-valueIdentityDescription
gi|659118456|ref|XP_008459129.1|2.2e-3653.16PREDICTED: uncharacterized protein LOC103498329 [Cucumis melo][more]
gi|659111306|ref|XP_008455685.1|4.9e-3653.16PREDICTED: uncharacterized protein LOC103495801 [Cucumis melo][more]
gi|659123900|ref|XP_008461893.1|1.8e-3551.28PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo][more]
gi|659112453|ref|XP_008456229.1|1.6e-3450.00PREDICTED: uncharacterized protein LOC103496234 [Cucumis melo][more]
gi|659082641|ref|XP_008441954.1|1.0e-3349.39PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012830T1MELO3C012830T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None