MELO3C012803 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012803
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Sensor kinase CusS
Location	chr4 : 12097606 .. 12098136 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGATGTCTCTATTGTACCTGCTCCAGTTCAGAGGAAACGTCCTCTAGTGCAAGAGCTCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACAGACACAGACACAAAGCGAGCATAGTTACGTTAGTCCATTAATGATGATGCCAACATTTGGAACGACATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGTATATTACAATTCAGAGGCAGGTCCATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCAATCCATCGTCTTCATATATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTACAACGGTACCCAAGCAATCAGATGAGCAACAACAACAAGAGATCAGGAGGAAATACAACAACAAAGAGTTCAGAGTCGACGACGACAACCAACTAGAAATCGTCGACGTTCAGGTTGTGGAACACATTGATTTTTTTTCTTTGAATGAAAATTGTTAA

mRNA sequence

ATGTACGATGTCTCTATTGTACCTGCTCCAGTTCAGAGGAAACGTCCTCTAGTGCAAGAGCTCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACAGACACAGACACAAAGCGAGCATAGTTACGTTAGTCCATTAATGATGATGCCAACATTTGGAACGACATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGTATATTACAATTCAGAGGCAGGTCCATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCAATCCATCGTCTTCATATATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTACAACGGTACCCAAGCAATCAGATGAGCAACAACAACAAGAGATCAGGAGGAAATACAACAACAAAGAGTTCAGAGTCGACGACGACAACCAACTAGAAATCGTCGACGTTCAGGTTGTGGAACACATTGATTTTTTTTCTTTGAATGAAAATTGTTAA

Coding sequence (CDS)

ATGTACGATGTCTCTATTGTACCTGCTCCAGTTCAGAGGAAACGTCCTCTAGTGCAAGAGCTCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACAGACACAGACACAAAGCGAGCATAGTTACGTTAGTCCATTAATGATGATGCCAACATTTGGAACGACATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGTATATTACAATTCAGAGGCAGGTCCATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCAATCCATCGTCTTCATATATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTACAACGGTACCCAAGCAATCAGATGAGCAACAACAACAAGAGATCAGGAGGAAATACAACAACAAAGAGTTCAGAGTCGACGACGACAACCAACTAGAAATCGTCGACGTTCAGGTTGTGGAACACATTGATTTTTTTTCTTTGAATGAAAATTGTTAA

Protein sequence

MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLYYEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQVVEHIDFFSLNENC*

Homology

[Close]

BLAST of MELO3C012803 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 3.9e-66
Identity = 126/163 (77.30%), Postives = 137/163 (84.05%), Query Frame = 1


Query: 1   MYDVSIVPAPVQRKRPLVQELDQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGT 60
           MYDV IVPAPVQR+RPLVQE DQLEEVDQH EEVPP+TQTQTQSEH+YVSP+MMMPTFG 
Sbjct: 83  MYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGM 142

Query: 61  TYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGRGEHNEYLY 120
           TYYD GVGQSSDFGR YYNSEAG SSTDFGQQYYDLGS+PSSSYMHGHGRGRGEHNEYLY
Sbjct: 143 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLY 202

Query: 121 YEVPTTVPKQSDEQQQQEIRRKYNNKEFRVDDDNQLEIVDVQV 164
           Y+VP  VP+QSDEQQQQE        + +   +N  EI   +V
Sbjct: 203 YKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQQQRV 245

[Close]

BLAST of MELO3C012803 vs. NCBI nr
Match: gi|778688386|ref|XP_011652738.1| (PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-21
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 1


Query: 22  DQLEEVDQHVEEVPPVTQTQTQSEHSYVSPLMMMPTFGTTYYDLGVGQSSDFGRVYYNSE 81
           DQLEEVDQ+VEEV PVTQTQ  SEH YVS +MMMPTFGTTYYD GVGQSSDF   YYNSE
Sbjct: 169 DQLEEVDQNVEEVAPVTQTQ--SEHGYVSLVMMMPTFGTTYYDYGVGQSSDFRTWYYNSE 228

Query: 82  AGPSSTDFGQQ 93
           AG SS++FGQQ
Sbjct: 229 AGSSSSNFGQQ 237

The following BLAST results are available for this feature:

BLAST of MELO3C012803 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069376\|ref\|XP_008449513.1\|	3.9e-66	77.30	PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo]	[more]
gi\|778688386\|ref\|XP_011652738.1\|	1.0e-21	80.28	PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012803T1	MELO3C012803T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C012803	Cucsa.140420	Cucumber (Gy14) v1	cgymeB234

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012803	Cucurbita maxima (Rimu)	cmameB471
MELO3C012803	Cucurbita maxima (Rimu)	cmameB568
MELO3C012803	Cucurbita moschata (Rifu)	cmomeB461
MELO3C012803	Cucurbita moschata (Rifu)	cmomeB557
MELO3C012803	Wild cucumber (PI 183967)	cpimeB210
MELO3C012803	Wild cucumber (PI 183967)	cpimeB217
MELO3C012803	Cucumber (Chinese Long) v2	cumeB219
MELO3C012803	Cucumber (Chinese Long) v2	cumeB225
MELO3C012803	Watermelon (Charleston Gray)	mewcgB335
MELO3C012803	Watermelon (Charleston Gray)	mewcgB346
MELO3C012803	Watermelon (97103) v1	mewmB360
MELO3C012803	Watermelon (97103) v1	mewmB371
MELO3C012803	Cucurbita pepo (Zucchini)	cpemeB231
MELO3C012803	Cucurbita pepo (Zucchini)	cpemeB690
MELO3C012803	Cucurbita pepo (Zucchini)	cpemeB803
MELO3C012803	Bottle gourd (USVL1VR-Ls)	lsimeB356
MELO3C012803	Bottle gourd (USVL1VR-Ls)	lsimeB358
MELO3C012803	Cucumber (Gy14) v2	cgybmeB183
MELO3C012803	Cucumber (Gy14) v2	cgybmeB187
MELO3C012803	Silver-seed gourd	carmeB0070
MELO3C012803	Silver-seed gourd	carmeB0772
MELO3C012803	Cucumber (Chinese Long) v3	cucmeB215
MELO3C012803	Cucumber (Chinese Long) v3	cucmeB221
MELO3C012803	Watermelon (97103) v2	mewmbB335
MELO3C012803	Watermelon (97103) v2	mewmbB349
MELO3C012803	Wax gourd	mewgoB401
MELO3C012803	Melon (DHL92) v3.5.1	memeB140
MELO3C012803	Cucumber (Gy14) v1	cgymeB433