MELO3C012794 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C012794
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRibonuclease J 2
Locationchr4 : 11845246 .. 11845707 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACACTTTCCTCCAAATCGGAAACGCATGTGGAGGTCTGTTGGAAGTAGACAAAGCTACAATGAATATGGAAAATCTCCTTTATGCCAAAATTAAGGTAAGGTACAACTACTGCGGATTCATTCCAGCTACTATTAGAATTAAAGACAAAAATGGCCATTCTTTCGTTGTTCACTCAATTACAATATGCTTGAGCAAGTGGTTAGCTGAACGCGATGTTAAAATACATAGTTCTTTCAAGAGACAGACAGCCATTGAATTTGATAACTTCAACCCAAAAGCGGAGCACTTCACCTTCTTCGGCGATTTGGCAATTCCGATCGACGAGTTTGAAATCCCAAAAAACAAATCATTAATAGTAGAATTGACAATGGAAGGAAATCCCACACATGCCAAGGAAATTAATGACAAGGATCTTCCAAAATCGGGTATAAAAACTCTAAGAGGTCGAAATTGGTAG

mRNA sequence

ATGGACACTTTCCTCCAAATCGGAAACGCATGTGGAGGTCTGTTGGAAGTAGACAAAGCTACAATGAATATGGAAAATCTCCTTTATGCCAAAATTAAGGTAAGGTACAACTACTGCGGATTCATTCCAGCTACTATTAGAATTAAAGACAAAAATGGCCATTCTTTCGTTGTTCACTCAATTACAATATGCTTGAGCAAGTGGTTAGCTGAACGCGATGTTAAAATACATAGTTCTTTCAAGAGACAGACAGCCATTGAATTTGATAACTTCAACCCAAAAGCGGAGCACTTCACCTTCTTCGGCGATTTGGCAATTCCGATCGACGAGTTTGAAATCCCAAAAAACAAATCATTAATAGTAGAATTGACAATGGAAGGAAATCCCACACATGCCAAGGAAATTAATGACAAGGATCTTCCAAAATCGGGTATAAAAACTCTAAGAGGTCGAAATTGGTAG

Coding sequence (CDS)

ATGGACACTTTCCTCCAAATCGGAAACGCATGTGGAGGTCTGTTGGAAGTAGACAAAGCTACAATGAATATGGAAAATCTCCTTTATGCCAAAATTAAGGTAAGGTACAACTACTGCGGATTCATTCCAGCTACTATTAGAATTAAAGACAAAAATGGCCATTCTTTCGTTGTTCACTCAATTACAATATGCTTGAGCAAGTGGTTAGCTGAACGCGATGTTAAAATACATAGTTCTTTCAAGAGACAGACAGCCATTGAATTTGATAACTTCAACCCAAAAGCGGAGCACTTCACCTTCTTCGGCGATTTGGCAATTCCGATCGACGAGTTTGAAATCCCAAAAAACAAATCATTAATAGTAGAATTGACAATGGAAGGAAATCCCACACATGCCAAGGAAATTAATGACAAGGATCTTCCAAAATCGGGTATAAAAACTCTAAGAGGTCGAAATTGGTAG

Protein sequence

MDTFLQIGNACGGLLEVDKATMNMENLLYAKIKVRYNYCGFIPATIRIKDKNGHSFVVHSITICLSKWLAERDVKIHSSFKRQTAIEFDNFNPKAEHFTFFGDLAIPIDEFEIPKNKSLIVELTMEGNPTHAKEINDKDLPKSGIKTLRGRNW*
Homology
[Close]
BLAST of MELO3C012794 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.5e-17
Identity = 46/106 (43.40%), Postives = 68/106 (64.15%), Query Frame = 1 

Query: 1   MDTFLQIGNACGGLLEVDKATMNMENLLYAKIKVRYNYCGFIPATIRIKDKNGHSFVVHS 60
           +++F+QIG+ACGG +EV K T  + +L+ A I+V+ NY GFIPA I++ DK   S+++  
Sbjct: 230 LESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYIIQV 289

Query: 61  ITICLSKWLAERDVKIHSSFKRQTAIEFDNFNPKAEHFTFFGDLAI 107
           I     KW   R+  IH +F R+ A  FD FN  +E + F G+LAI
Sbjct: 290 IVKTEGKWHLGRNPSIHGTFTREAARRFDEFNLNSEQYFFEGNLAI 335

[Close]
BLAST of MELO3C012794 vs. TrEMBL
Match: A0A0A0LH82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G055060 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 35/83 (42.17%), Postives = 45/83 (54.22%), Query Frame = 1 

Query: 41  FIPATIRIKDKNGHSFVVHSITICLSKWLAERDVKIHSSFKRQTAIEFDNFNPKAEHFTF 100
           F+PA IRI D  G+SF +  ++    KWL ER+V+ H  FK Q    F  FNP A+ FTF
Sbjct: 8   FVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNAKQFTF 67

Query: 101 FGDLAIPIDEFEIPKNKSLIVEL 124
            G   +P       KNK L  E+
Sbjct: 68  IGSEGLPPKHPTSSKNKVLNDEI 90

[Close]
BLAST of MELO3C012794 vs. TrEMBL
Match: A0A0A0KFP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.6e-07
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1 

Query: 1   MDTFLQIGNACGGLLEVDKATMNMENLLYAKIKVRYNYCGFIPATIRIKDKNGHSFVVHS 60
           M+TF QIG ACG  +E+ +       +  A +KV+ N+ GFIPA I + DK G+SF+V S
Sbjct: 84  METFTQIGEACGSFIEITREIKKQVEIRQAMLKVKENFTGFIPAFINVFDKKGNSFLVQS 143

Query: 61  I 62
           I
Sbjct: 144 I 144

[Close]
BLAST of MELO3C012794 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 5.5e-24
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 1 

Query: 1   MDTFLQIGNACGGLLEVDKATMNMENLLYAKIKVRYNYCGFIPATIRIKDKNGHSFVVHS 60
           M TF QIG ACGGL++V + T + +NL+ AKIK+RYNY GF+PA +RI D  G+ F +  
Sbjct: 303 MKTFQQIGKACGGLIKVAEETRSAKNLIEAKIKIRYNYSGFLPANVRIFDNEGNKFSIQV 362

Query: 61  ITICLSKWLAERDVKIHSSFKRQTAIEFDNFNPKAEHFTFFGDLAIPID 110
           +T    KWL ER+V++H +FKRQ A  FD FNP++E F F G  AI  D
Sbjct: 363 VTHPEGKWLIERNVRLHGTFKRQAAAAFDEFNPESEQFFFEGMEAISPD 411

[Close]
BLAST of MELO3C012794 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 96.3 bits (238), Expect = 5.0e-17
Identity = 46/106 (43.40%), Postives = 68/106 (64.15%), Query Frame = 1 

Query: 1   MDTFLQIGNACGGLLEVDKATMNMENLLYAKIKVRYNYCGFIPATIRIKDKNGHSFVVHS 60
           +++F+QIG+ACGG +EV K T  + +L+ A I+V+ NY GFIPA I++ DK   S+++  
Sbjct: 230 LESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYIIQV 289

Query: 61  ITICLSKWLAERDVKIHSSFKRQTAIEFDNFNPKAEHFTFFGDLAI 107
           I     KW   R+  IH +F R+ A  FD FN  +E + F G+LAI
Sbjct: 290 IVKTEGKWHLGRNPSIHGTFTREAARRFDEFNLNSEQYFFEGNLAI 335

[Close]
BLAST of MELO3C012794 vs. NCBI nr
Match: gi|700205999|gb|KGN61118.1| (hypothetical protein Csa_2G055060 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 1.5e-08
Identity = 35/83 (42.17%), Postives = 45/83 (54.22%), Query Frame = 1 

Query: 41  FIPATIRIKDKNGHSFVVHSITICLSKWLAERDVKIHSSFKRQTAIEFDNFNPKAEHFTF 100
           F+PA IRI D  G+SF +  ++    KWL ER+V+ H  FK Q    F  FNP A+ FTF
Sbjct: 8   FVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNAKQFTF 67

Query: 101 FGDLAIPIDEFEIPKNKSLIVEL 124
            G   +P       KNK L  E+
Sbjct: 68  IGSEGLPPKHPTSSKNKVLNDEI 90

[Close]
BLAST of MELO3C012794 vs. NCBI nr
Match: gi|700192460|gb|KGN47664.1| (hypothetical protein Csa_6G367105 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1 

Query: 1   MDTFLQIGNACGGLLEVDKATMNMENLLYAKIKVRYNYCGFIPATIRIKDKNGHSFVVHS 60
           M+TF QIG ACG  +E+ +       +  A +KV+ N+ GFIPA I + DK G+SF+V S
Sbjct: 84  METFTQIGEACGSFIEITREIKKQVEIRQAMLKVKENFTGFIPAFINVFDKKGNSFLVQS 143

Query: 61  I 62
           I
Sbjct: 144 I 144

The following BLAST results are available for this feature:
BLAST of MELO3C012794 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GB30_CUCME3.5e-1743.40Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0LH82_CUCSA1.0e-0842.17Uncharacterized protein OS=Cucumis sativus GN=Csa_2G055060 PE=4 SV=1[more]
A0A0A0KFP0_CUCSA9.6e-0745.90Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1[more]
BLAST of MELO3C012794 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659071590|ref|XP_008460776.1|5.5e-2452.29PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me... [more]
gi|307135793|gb|ADN33672.1|5.0e-1743.40hypothetical protein [Cucumis melo subsp. melo][more]
gi|700205999|gb|KGN61118.1|1.5e-0842.17hypothetical protein Csa_2G055060 [Cucumis sativus][more]
gi|700192460|gb|KGN47664.1|1.4e-0645.90hypothetical protein Csa_6G367105 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012794T1MELO3C012794T1mRNA