MELO3C012783 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C012783
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase subunit beta'
Locationchr4 : 11670671 .. 11670838 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCGACGACGTTGAAGACGTGGACGAGGGGGACTCCGCGTACGCGACAACCACCGCTACAGAAGACATTCACTACATTGAGACGACAAACAAGTGGTCTCAGTGGTACAATGAACTAGCCGAATCAATGTTCACAGATTGGCAGTTGCGTAATGCTTAG

mRNA sequence

ATGACATATTGCGACGACGTTGAAGACGTGGACGAGGGGGACTCCGCGTACGCGACAACCACCGCTACAGAAGACATTCACTACATTGAGACGACAAACAAGTGGTCTCAGTGGTACAATGAACTAGCCGAATCAATGTTCACAGATTGGCAGTTGCGTAATGCTTAG

Coding sequence (CDS)

ATGACATATTGCGACGACGTTGAAGACGTGGACGAGGGGGACTCCGCGTACGCGACAACCACCGCTACAGAAGACATTCACTACATTGAGACGACAAACAAGTGGTCTCAGTGGTACAATGAACTAGCCGAATCAATGTTCACAGATTGGCAGTTGCGTAATGCTTAG

Protein sequence

MTYCDDVEDVDEGDSAYATTTATEDIHYIETTNKWSQWYNELAESMFTDWQLRNA*
Homology
[Close]
BLAST of MELO3C012783 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-17
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 1   MTYCDDVEDVDEGDSAYATTTATEDIHYIETTNKWSQWYNELAESMFTDWQLR 54
           MTYC+DVED DEGDS YATTTA+EDI YIETTN+WSQW ++LA SMFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

[Close]
BLAST of MELO3C012783 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.5e-06
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 1 

Query: 1   MTYCDDVEDVDEGDSAYATTTATEDIHYIETTNKWSQWYNELAESMFT 49
           MT  D  +++DE DS +AT TA +DIHYIET+N+WSQW + LAE + T
Sbjct: 311 MTNFDIEDNIDEVDSTHAT-TAADDIHYIETSNEWSQWRDNLAEEIMT 357

[Close]
BLAST of MELO3C012783 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-19
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 1 

Query: 1   MTYCDDVEDVDEGDSAYATTTATEDIHYIETTNKWSQWYNELAESMFTDWQLRNA 56
           MTYCDDV+DVDEGD AYATTT  E+IHYIE TN+WSQW ++LAESMFTDWQLRNA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

[Close]
BLAST of MELO3C012783 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-17
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 1 

Query: 1   MTYCDDVEDVDEGDSAYATTTATEDIHYIETTNKWSQWYNELAESMFTDWQLR 54
           MTYC+DVED DEGDS YATTTA+EDI YIETTN+WSQW ++LA SMFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

[Close]
BLAST of MELO3C012783 vs. NCBI nr
Match: gi|659126170|ref|XP_008463047.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 3.0e-12
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = 1 

Query: 1   MTYCDDVEDVDEGDSAYATTTATEDIHYIETTNKWSQWYNELAESMFTD 50
           MT CDD++DVDEG+SAY  T A EDI YIETTN+WSQWY++LAE++F +
Sbjct: 203 MTNCDDIDDVDEGNSAYTKTIAIEDIKYIETTNEWSQWYDKLAEALFIE 251

[Close]
BLAST of MELO3C012783 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 4.4e-11
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 1 

Query: 1   MTYCDDVEDVDEGDSAYATTTATEDIHYIETTNKWSQWYNELAESMFTDWQLRN 55
           MT  D  +++DE DS +AT TA +DIHYIET+N+WSQW ++LAE MFTDW+LRN
Sbjct: 150 MTNFDIEDNIDEVDSTHAT-TAADDIHYIETSNEWSQWRDDLAEEMFTDWELRN 202

[Close]
BLAST of MELO3C012783 vs. NCBI nr
Match: gi|659125597|ref|XP_008462767.1| (PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 9.7e-11
Identity = 31/53 (58.49%), Postives = 44/53 (83.02%), Query Frame = 1 

Query: 1   MTYCDDVEDVDEGDSAYATTTATEDIHYIETTNKWSQWYNELAESMFTDWQLR 54
           MT  +D+ D++E DSAYATTT  ++I YIETTN+W+QW +EL+++MF +WQLR
Sbjct: 107 MTNGEDLYDINEEDSAYATTTTGDNIQYIETTNEWTQWQDELSKAMFIEWQLR 159

The following BLAST results are available for this feature:
BLAST of MELO3C012783 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB2_CUCME1.3e-1779.25Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME6.5e-0656.25Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C012783 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099182|ref|XP_008450472.1|2.0e-1981.82PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|1.8e-1779.25retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659126170|ref|XP_008463047.1|3.0e-1267.35PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
gi|659121362|ref|XP_008460622.1|4.4e-1162.96PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo][more]
gi|659125597|ref|XP_008462767.1|9.7e-1158.49PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012783T1MELO3C012783T1mRNA