MELO3C012770 (gene) Melon (DHL92) v3.5.1

NameMELO3C012770
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr1 : 23410706 .. 23411280 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCAAAATCGACAAGGTAAAGAAAGAAGTGGAAGATTTGTGCTCGGGGTGTCTAGCAGAGGGAATTTTAAGTCTCAGTACAGTGGTTCTTCTTTCTCTAAATCGGGATCAGGCGGAAGAGCCCAGAGATCGAATGGTTCTAGTCATCCTATATCTTCTACAGGAGGTTCTCATATTGCTCGATCAGATAGGGTTGTATCAGAATCTGGCAAGAGTAGTGTATGTTATAACTGCGGTCAACCAGGACATTACCGTAGAAACTGTCCACATATGATACTAGGGGGTAATACTATCTTGAAAACCACTTCTCAGACAGTAAGCCAGCAACCAAGAACCACGAGAACTAGTGGTGAAGGCTCTAGTGGGGGAAAACAAAAAGGACCAGCGGGTCGCTCTCGCCAGGAAGGGAAGGTTTTTGCAATGACCACTACAAGAAATCTGGCCTTTAATGTCACTTGGCAACCGACATCTTTGCAAGCGTTATTAAAGGTCTTTAATGTCGATTTAAAAACGACATTAAACTGACATCTTTGATAGTGTTATCAAAGGTCTTTAATGTCGGTTCATCTTGA

mRNA sequence

ATGCATCAAAATCGACAAGGTAAAGAAAGAAGTGGAAGATTTGTGCTCGGGGTGTCTAGCAGAGGGAATTTTAAGTCTCAGTACAGTGGTTCTTCTTTCTCTAAATCGGGATCAGGCGGAAGAGCCCAGAGATCGAATGGTTCTAGTCATCCTATATCTTCTACAGGAGGTTCTCATATTGCTCGATCAGATAGGGTTGTATCAGAATCTGGCAAGAGTAGTGTATGTTATAACTGCGGTCAACCAGGACATTACCGTAGAAACTGTCCACATATGATACTAGGGGGTAATACTATCTTGAAAACCACTTCTCAGACAGTAAGCCAGCAACCAAGAACCACGAGAACTAGTGGTGAAGGCTCTAGTGGGGGAAAACAAAAAGGACCAGCGGGTCGCTCTCGCCAGGAAGGGAAGGTCTTTAATGTCGGTTCATCTTGA

Coding sequence (CDS)

ATGCATCAAAATCGACAAGGTAAAGAAAGAAGTGGAAGATTTGTGCTCGGGGTGTCTAGCAGAGGGAATTTTAAGTCTCAGTACAGTGGTTCTTCTTTCTCTAAATCGGGATCAGGCGGAAGAGCCCAGAGATCGAATGGTTCTAGTCATCCTATATCTTCTACAGGAGGTTCTCATATTGCTCGATCAGATAGGGTTGTATCAGAATCTGGCAAGAGTAGTGTATGTTATAACTGCGGTCAACCAGGACATTACCGTAGAAACTGTCCACATATGATACTAGGGGGTAATACTATCTTGAAAACCACTTCTCAGACAGTAAGCCAGCAACCAAGAACCACGAGAACTAGTGGTGAAGGCTCTAGTGGGGGAAAACAAAAAGGACCAGCGGGTCGCTCTCGCCAGGAAGGGAAGGTCTTTAATGTCGGTTCATCTTGA

Protein sequence

MHQNRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSNGSSHPISSTGGSHIARSDRVVSESGKSSVCYNCGQPGHYRRNCPHMILGGNTILKTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVFNVGSS*
BLAST of MELO3C012770 vs. TrEMBL
Match: M5VHX2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026182mg PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-06
Identity = 49/153 (32.03%), Postives = 71/153 (46.41%), Query Frame = 1

Query: 17  GVSSRGNFKSQYSGSSFSKSGSGGRAQ-RSNGSSHPISSTGGSHIARSDR-----VVSES 76
           G S RG++ S   GSS  +S  G R    S+G S+  SS+G      + R     ++S S
Sbjct: 265 GSSKRGSYSS---GSSSGRSYEGYRPGFNSSGGSNQSSSSGNRSEGSAARGAGRQLLSRS 324

Query: 77  GKSSV--------CYNCGQPGHYRRNCPHMILGGNTILKTTSQTVSQQ-----PRTTRTS 136
           G+ S         CY CGQPGH+R++CP  +    T   +T +TV Q      P     S
Sbjct: 325 GRRSRPQCASITGCYYCGQPGHFRKDCPLFLQTRETTDASTPRTVMQGRSQEIPPFVEAS 384

Query: 137 GEGSS--------GGKQKGPAGRSRQEGKVFNV 143
             G +          +Q+G   RSR  G+V+N+
Sbjct: 385 SSGGAQTNVASRGSSQQRGRGRRSRATGRVYNM 414

BLAST of MELO3C012770 vs. TrEMBL
Match: M5VM98_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024392mg PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.5e-06
Identity = 57/178 (32.02%), Postives = 81/178 (45.51%), Query Frame = 1

Query: 6   QGKERSGRFVLGVSSRGNFK--SQYSGSS-----------FSKSG----SGGRAQRSNGS 65
           QG+ R  +F +G  S+G+ K  S  SGSS           FS SG    SG    RS GS
Sbjct: 141 QGEPRRHQFEIGDPSQGSSKRGSYSSGSSSGRSYGGYRPRFSSSGGSNQSGSSGNRSGGS 200

Query: 66  S-----HPISSTGGSH----IARSDRVVSESGK--SSVCYNCGQPGHYRRNCPHMILGGN 125
           +       + S  G       A+  R  S + +  ++ CY CGQ GH+R++CP ++    
Sbjct: 201 AARGIGRQLLSVSGMRSRPQCAKYGRYHSGTCQRGTTGCYYCGQSGHFRKDCPLLLQNRE 260

Query: 126 TILKTTSQTVSQ--QPRTTRTSGEGSSGG-----------KQKGPAGRSRQEGKVFNV 143
           T   +T  T  Q    RT +     SSGG           +Q+G  GRSR  G+V+N+
Sbjct: 261 TTTASTPGTGIQGRSQRTPQFVEASSSGGAQTSVANRGSSQQRGRGGRSRATGRVYNM 318

BLAST of MELO3C012770 vs. TrEMBL
Match: M5X6Q7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016726mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.9e-06
Identity = 47/145 (32.41%), Postives = 74/145 (51.03%), Query Frame = 1

Query: 6   QGKERSGRFVLGVSSRGNFK--SQYSGSSFSKSGSGGRA--QRSNGSSHPISSTGGSHIA 65
           +G+ R  +F +G  S+G+ K  S  SG+S  +S  G R     S GS+   SS   S ++
Sbjct: 204 RGEPRRQQFDIGSPSQGSSKRSSYSSGTSSGRSYGGYRPGFSSSGGSNQSGSSGNRSGVS 263

Query: 66  RSDRVVSE---SGKSSVCYNCGQPGHYRRNCPHMILGGNTILKTTSQTVSQQPRTTRTSG 125
            +   V+    S  ++ CY CGQ GH+R++CP ++    T   +T  T   Q R+     
Sbjct: 264 AARGGVAPNVPSVGTTRCYYCGQFGHFRKDCPLLLQNRETTAASTPGT-GMQGRSQGIPH 323

Query: 126 EGSSG-GKQKGPAGRSRQEGKVFNV 143
             S G  +Q+G  G SR  G+V+N+
Sbjct: 324 VASRGSSQQRGRGGHSRATGRVYNM 347

BLAST of MELO3C012770 vs. TrEMBL
Match: M5WZT7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026240mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.7e-06
Identity = 51/150 (34.00%), Postives = 70/150 (46.67%), Query Frame = 1

Query: 6   QGKERSGRFVLGVSS-------RGNFKSQYSGSSFSKSG--SGGRAQRSNGSSHPISSTG 65
           QG  + G +  G SS       R  F S    +  S SG  SGG A +  G      S G
Sbjct: 185 QGSSKRGSYSSGSSSGCSYGGYRPGFSSSGGSNQSSSSGNRSGGSAGKGAGRQLLSGSGG 244

Query: 66  GSH--IARSDRVVSESGK--SSVCYNCGQPGHYRRNCPHMILGGNTILKTTSQTVSQQPR 125
            SH   AR  R  S   +  ++ CY CGQ GH++++CP         L+T   T +  P 
Sbjct: 245 WSHSQYARCGRYHSGPCQQGTTGCYYCGQLGHFQKDCP-------LFLQTRETTDASTPG 304

Query: 126 TTRTSGEGSSGGKQKGPAGRSRQEGKVFNV 143
           T     +GSS  +Q+G  GRSR  G+V+N+
Sbjct: 305 TVM---QGSS--QQRGRGGRSRATGRVYNM 322

BLAST of MELO3C012770 vs. NCBI nr
Match: gi|778697787|ref|XP_011654404.1| (PREDICTED: uncharacterized protein LOC105435385 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 6.0e-36
Identity = 85/120 (70.83%), Postives = 92/120 (76.67%), Query Frame = 1

Query: 21  RGNFKSQYSGSSFSKSGSGGRAQRSNGSSHPISSTGGSHIARSDRVVSESGKSSVCYNCG 80
           RGN KSQYSGSSFSKSGSGG  QR + SSHPI  T  SH+ +SD+VVS S K SVCYN G
Sbjct: 92  RGNLKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRASHVVQSDKVVSRSSKRSVCYNYG 151

Query: 81  QPGHYRRNCPHMILGGNTILKTTSQTVSQQPRTTRTSGEGSSGGKQKGPAGRSRQEGKVF 140
           QPGHYRR+   +I   NTI KTTSQT SQQP+TTRT GEGSSG KQKG  G SRQE KVF
Sbjct: 152 QPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTRGEGSSGVKQKGLVG-SRQEWKVF 210

BLAST of MELO3C012770 vs. NCBI nr
Match: gi|645230787|ref|XP_008222091.1| (PREDICTED: uncharacterized protein DDB_G0271670-like [Prunus mume])

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 55/151 (36.42%), Postives = 76/151 (50.33%), Query Frame = 1

Query: 12  GRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSNGSSHPISSTGG----SHIARSDRVV 71
           G F  G SS G   S  SGSS S+SG  G A R  G    + ST G    +  A+  R  
Sbjct: 116 GGFRPGASSSGG--SNQSGSSGSRSG--GSAARGTGKQ--LQSTSGRKNRTQCAQCGRYH 175

Query: 72  S---ESGKSSVCYNCGQPGHYRRNCPHMILGGNTILKTTSQTVSQ--QPRTTRTSGEGSS 131
           S   + G +S CY+ GQPGH+ R CP  + GG T + +T +T +Q     T++  G  SS
Sbjct: 176 SGTCQQGTTS-CYHYGQPGHFLRECPMFLQGGETTIASTRRTGTQGGSQETSQFGGPSSS 235

Query: 132 GG-----------KQKGPAGRSRQEGKVFNV 143
            G           +Q+G  GRSR  G+V+++
Sbjct: 236 AGAQTSVASRGDNQQRGRGGRSRATGRVYSM 259

BLAST of MELO3C012770 vs. NCBI nr
Match: gi|659130058|ref|XP_008464978.1| (PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 3.1e-08
Identity = 46/127 (36.22%), Postives = 64/127 (50.39%), Query Frame = 1

Query: 13  RFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSNGSSHPISSTGGSHIARS----DRVVS 72
           R V   S   +FK +  G    +  SG   QR    S   SS   + +ARS    + V S
Sbjct: 132 RGVSTTSGCQDFKHRSGGKPLRQMSSGSAYQRQ---SQRASSQSANSVARSRTGQESVAS 191

Query: 73  ESGKSSVCYNCGQPGHYRRNCPHMILGGNTILKTTSQTVSQQPRTTRTSGEGSSGGKQKG 132
           ES ++  C   GQ GH++R+CP + +         S TV +QPR +  +GEG+SG +QKG
Sbjct: 192 ESRRTPCC---GQTGHFKRDCPQLRVAVRRDQGVESHTV-EQPRISTAAGEGTSGARQKG 251

Query: 133 PAGRSRQ 136
             GR RQ
Sbjct: 252 VVGRPRQ 251

BLAST of MELO3C012770 vs. NCBI nr
Match: gi|659112465|ref|XP_008456237.1| (PREDICTED: uncharacterized protein LOC103496240 [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 3.1e-08
Identity = 49/137 (35.77%), Postives = 73/137 (53.28%), Query Frame = 1

Query: 6   QGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRA--QRSNGSSHPISSTGGSHIARS 65
           +G+E+  RF  GV+         SG    K  SGG+   Q S+GS++P  S G SH  R 
Sbjct: 181 RGREQR-RFTPGVN--------VSGCQDFKRRSGGKPLRQMSSGSAYP--SCGKSH--RG 240

Query: 66  DRVVSESGKSSVCYNCGQPGHYRRNCPHMILGGNTILKTTSQTVSQQPRTTRTSGEGSSG 125
             ++     + VCY CGQ  H++R+CP + +         S T+ +Q R +  +GE +SG
Sbjct: 241 QCLIG----AGVCYRCGQTRHFKRDCPKLRVAVRRDQGIESHTI-EQSRISTATGEETSG 299

Query: 126 GKQKGPAGRSRQEGKVF 141
            +QKG  GR RQ+ KV+
Sbjct: 301 ARQKGVVGRHRQQRKVY 299

BLAST of MELO3C012770 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 4.0e-08
Identity = 43/124 (34.68%), Postives = 59/124 (47.58%), Query Frame = 1

Query: 4   NRQGKERSGRFVLGVSSRGNFKSQYSGSSFSKSGSGGRAQRSNGSSHPISSTGGSHIARS 63
           NRQG  R   FV GV+SRGNFKS+  GS      +   +Q S+ S+    ++GG    + 
Sbjct: 267 NRQGNRR---FVQGVASRGNFKSRRRGSFDYGPNTSATSQVSSSSNRTTRNSGGPRRWQQ 326

Query: 64  DRVVSESGK------------------SSVCYNCGQPGHYRRNCPHMILGGNTILKTTSQ 110
              VS   K                  ++VCYNCGQP H+R+ CP +          +SQ
Sbjct: 327 REPVSSHNKNPTCLNCGKSHTGECLWGANVCYNCGQPRHFRKECPQLHKDRKVRQGASSQ 386

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
M5VHX2_PRUPE2.6e-0632.03Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026182mg PE=4 SV=1[more]
M5VM98_PRUPE4.5e-0632.02Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024392mg PE=4 SV=1[more]
M5X6Q7_PRUPE5.9e-0632.41Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016726mg PE=4 SV=1[more]
M5WZT7_PRUPE7.7e-0634.00Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa026240mg PE=4 S... [more]
Match NameE-valueIdentityDescription
gi|778697787|ref|XP_011654404.1|6.0e-3670.83PREDICTED: uncharacterized protein LOC105435385 [Cucumis sativus][more]
gi|645230787|ref|XP_008222091.1|1.1e-0836.42PREDICTED: uncharacterized protein DDB_G0271670-like [Prunus mume][more]
gi|659130058|ref|XP_008464978.1|3.1e-0836.22PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo][more]
gi|659112465|ref|XP_008456237.1|3.1e-0835.77PREDICTED: uncharacterized protein LOC103496240 [Cucumis melo][more]
gi|659116534|ref|XP_008458118.1|4.0e-0834.68PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012770T1MELO3C012770T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 70..91
score: 2.
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 75..91
score: 4.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 75..91
score: 3.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 76..90
score:
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 70..93
score: 5.5

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None