MELO3C012769 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012769
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	cyclic nucleotide-gated channel 17
Location	chr1 : 23409998 .. 23410210 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGTGGGGAGTCTGATGCCAAATCTAGTCGCCCTCATGTTGAAGGGAATATGGAAGAACAATTGCTTGATAGTTTGGCTCAAAGATTAATTTCGGGGATTAGATCGGCACAATCAGACCATGAAAAGAAGTATGGGATTGAGAGATTGAAAGCCTTAGGTGCTACTACTTTTGCGGGGACAACAAATCCCGCCGATGCTGAAGCATGA

mRNA sequence

ATGGAAAGTGGGGAGTCTGATGCCAAATCTAGTCGCCCTCATGTTGAAGGGAATATGGAAGAACAATTGCTTGATAGTTTGGCTCAAAGATTAATTTCGGGGATTAGATCGGCACAATCAGACCATGAAAAGAAGTATGGGATTGAGAGATTGAAAGCCTTAGGTGCTACTACTTTTGCGGGGACAACAAATCCCGCCGATGCTGAAGCATGA

Coding sequence (CDS)

ATGGAAAGTGGGGAGTCTGATGCCAAATCTAGTCGCCCTCATGTTGAAGGGAATATGGAAGAACAATTGCTTGATAGTTTGGCTCAAAGATTAATTTCGGGGATTAGATCGGCACAATCAGACCATGAAAAGAAGTATGGGATTGAGAGATTGAAAGCCTTAGGTGCTACTACTTTTGCGGGGACAACAAATCCCGCCGATGCTGAAGCATGA

Protein sequence

MESGESDAKSSRPHVEGNMEEQLLDSLAQRLISGIRSAQSDHEKKYGIERLKALGATTFAGTTNPADAEA*

Homology

[Close]

BLAST of MELO3C012769 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-26
Identity = 65/70 (92.86%), Postives = 66/70 (94.29%), Query Frame = 1


Query: 1   MESGESDAKSSRPHVEGNMEEQLLDSLAQRLISGIRSAQSDHEKKYGIERLKALGATTFA 60
           M SGESDA+SSRPHVEGNMEEQLLD LAQRLISGIRSAQSD EKKYGIERLKALGATTF 
Sbjct: 42  MGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFV 101

Query: 61  GTTNPADAEA 71
           GTTNPADAEA
Sbjct: 102 GTTNPADAEA 111

[Close]

BLAST of MELO3C012769 vs. NCBI nr
Match: gi|659068829|ref|XP_008446512.1| (PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 2.9e-20
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 1


Query: 1  MESGESDAKSSRPHVEGNMEEQLLDSLAQRLISGIRSAQSDHEKKYGIERLKALGATTFA 60
          MES E DA+SSRPHVEGN+EEQLLD LAQR +S I+S QSD EKK+ IERLKALG+TTFA
Sbjct: 23 MESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKSTQSDLEKKFEIERLKALGSTTFA 82

Query: 61 GTTNPADAEA 71
           TTNPA+AEA
Sbjct: 83 RTTNPANAEA 92

[Close]

BLAST of MELO3C012769 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 32/69 (46.38%), Postives = 50/69 (72.46%), Query Frame = 1


Query: 1  MESGESDAKSSRPHVEGNMEEQLLDSLAQRLISGIRSAQSDHEKKYGIERLKALGATTFA 60
          +E+ ES+ +SS    +  ++E+LL+ + + + +G+RS  ++ EK +GIERLKALGATTFA
Sbjct: 24 LENEESEGESSHQQGDMTVDEKLLNKITEGITTGMRSLNNNLEKTFGIERLKALGATTFA 83

Query: 61 GTTNPADAE 70
           TT+P D E
Sbjct: 84 RTTDPTDGE 92

The following BLAST results are available for this feature:

BLAST of MELO3C012769 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072264\|ref\|XP_008464580.1\|	1.2e-26	92.86	PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo]	[more]
gi\|659068829\|ref\|XP_008446512.1\|	2.9e-20	77.14	PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo]	[more]
gi\|659116534\|ref\|XP_008458118.1\|	1.2e-08	46.38	PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012769T1	MELO3C012769T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012769	Cucurbita pepo (Zucchini)	cpemeB127
MELO3C012769	Bottle gourd (USVL1VR-Ls)	lsimeB201
MELO3C012769	Cucumber (Gy14) v2	cgybmeB481
MELO3C012769	Silver-seed gourd	carmeB0433
MELO3C012769	Cucumber (Chinese Long) v3	cucmeB560
MELO3C012769	Watermelon (97103) v2	mewmbB219
MELO3C012769	Wax gourd	mewgoB262
MELO3C012769	Cucumber (Gy14) v1	cgymeB082
MELO3C012769	Cucurbita moschata (Rifu)	cmomeB322
MELO3C012769	Wild cucumber (PI 183967)	cpimeB549
MELO3C012769	Cucumber (Chinese Long) v2	cumeB543
MELO3C012769	Watermelon (Charleston Gray)	mewcgB173
MELO3C012769	Watermelon (97103) v1	mewmB194