MELO3C012768 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012768
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	High affinity immunoglobulin alpha and immunoglobulin mu Fc receptor
Location	chr1 : 23390774 .. 23391217 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGATTTTGAGACTATAGCTCTAACGCAGGCAATATTTGACGTCTTCAAGAATGGGGTAGTAGAGAAGATGACATACCCTGGAAGCTTCATTGTACCGTGCTCAATAGGTGGCATGGATCTTGGTTGTGCACTATGCAATCTAGGAGCAAATATCAACTTAATATTTCTCTCTATCTTCAAGAAATTAGGGATAGGGGAGGTTCAACCTACACAAATGGCGTTCCAAATAACTGATAAATCCATCACGCGACCTAAGGGAAAGATCGAAGAGGTGCTGGTTAAGGTGGACAAGTTTTTATTCCACGCATACTTCGTTATTCTGGACTTCAAAGCTGATCGGGAGGTTCCTATCATTTTAGGGTGGCCGTTTCTGTCAATAGGTCGTGCCCTTATTAATGTCCACCAAAGGGAATTGACTATGCGGCTTAATGACCAATAA

mRNA sequence

ATGAATGATTTTGAGACTATAGCTCTAACGCAGGCAATATTTGACGTCTTCAAGAATGGGGTAGTAGAGAAGATGACATACCCTGGAAGCTTCATTGTACCGTGCTCAATAGGTGGCATGGATCTTGGTTGTGCACTATGCAATCTAGGAGCAAATATCAACTTAATATTTCTCTCTATCTTCAAGAAATTAGGGATAGGGGAGGTTCAACCTACACAAATGGCGTTCCAAATAACTGATAAATCCATCACGCGACCTAAGGGAAAGATCGAAGAGGTGCTGGTTAAGGTGGACAAGTTTTTATTCCACGCATACTTCGTTATTCTGGACTTCAAAGCTGATCGGGAGGTTCCTATCATTTTAGGGTGGCCGTTTCTGTCAATAGGTCGTGCCCTTATTAATGTCCACCAAAGGGAATTGACTATGCGGCTTAATGACCAATAA

Coding sequence (CDS)

ATGAATGATTTTGAGACTATAGCTCTAACGCAGGCAATATTTGACGTCTTCAAGAATGGGGTAGTAGAGAAGATGACATACCCTGGAAGCTTCATTGTACCGTGCTCAATAGGTGGCATGGATCTTGGTTGTGCACTATGCAATCTAGGAGCAAATATCAACTTAATATTTCTCTCTATCTTCAAGAAATTAGGGATAGGGGAGGTTCAACCTACACAAATGGCGTTCCAAATAACTGATAAATCCATCACGCGACCTAAGGGAAAGATCGAAGAGGTGCTGGTTAAGGTGGACAAGTTTTTATTCCACGCATACTTCGTTATTCTGGACTTCAAAGCTGATCGGGAGGTTCCTATCATTTTAGGGTGGCCGTTTCTGTCAATAGGTCGTGCCCTTATTAATGTCCACCAAAGGGAATTGACTATGCGGCTTAATGACCAATAA

Protein sequence

MNDFETIALTQAIFDVFKNGVVEKMTYPGSFIVPCSIGGMDLGCALCNLGANINLIFLSIFKKLGIGEVQPTQMAFQITDKSITRPKGKIEEVLVKVDKFLFHAYFVILDFKADREVPIILGWPFLSIGRALINVHQRELTMRLNDQ*

Homology

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BLAST of MELO3C012768 vs. TrEMBL
Match: A0A0S3QWS7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G023800 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-35
Identity = 77/147 (52.38%), Postives = 109/147 (74.15%), Query Frame = 1


Query: 1   MNDFETIALTQAIFDVFKNGVVEKMTYPGSFIVPCSIGGMDLGCALCNLGANINLIFLSI 60
           + D ETI LT+    + +  +  K+  PGSF++PC IG + +G ALC+LGA+INL+ LSI
Sbjct: 103 LQDDETIMLTEECSAIIQQKLPPKLKDPGSFVIPCEIGNITVGKALCDLGASINLMPLSI 162

Query: 61  FKKLGIGEVQPTQMAFQITDKSITRPKGKIEEVLVKVDKFLFHAYFVILDFKADREVPII 120
           FK+LGIGEV+PT +  Q+ D+S+T P G +E+VLVKVDKF+F   FV+LD + D +VPII
Sbjct: 163 FKRLGIGEVKPTMITLQLADRSMTYPYGIVEDVLVKVDKFIFPTDFVVLDMEEDAKVPII 222

Query: 121 LGWPFLSIGRALINVHQRELTMRLNDQ 148
           LG PFL+ GRALI+V Q +L +R+ ++
Sbjct: 223 LGRPFLATGRALIDVEQGQLMLRVANE 249

[Close]

BLAST of MELO3C012768 vs. TrEMBL
Match: A0A151SV10_CAJCA (Retrovirus-related Pol polyprotein from transposon opus OS=Cajanus cajan GN=KK1_014042 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 8.8e-34
Identity = 74/139 (53.24%), Postives = 104/139 (74.82%), Query Frame = 1


Query: 9   LTQAIFDVFKNGVVEKMTYPGSFIVPCSIGGMDLGCALCNLGANINLIFLSIFKKLGIGE 68
           LT+    + +  +  K+  PGSF++PC IG + +  ALC+LGA+INL+ LSIFK+LGIGE
Sbjct: 2   LTEECSAIIQQKLPPKLKDPGSFVIPCEIGNLMVSKALCDLGASINLMPLSIFKRLGIGE 61

Query: 69  VQPTQMAFQITDKSITRPKGKIEEVLVKVDKFLFHAYFVILDFKADREVPIILGWPFLSI 128
           V+PT +  Q+ D+S+T P G +E+VLVKVDKF+F A FV+LD + D +VPIILG PFL+ 
Sbjct: 62  VKPTMITLQLADRSVTCPYGVVEDVLVKVDKFIFPANFVVLDMEEDAKVPIILGRPFLAT 121

Query: 129 GRALINVHQRELTMRLNDQ 148
           GRALI+V Q EL +R+ ++
Sbjct: 122 GRALIDVQQGELMLRVANE 140

[Close]

BLAST of MELO3C012768 vs. TrEMBL
Match: A5AZ88_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.8e-32
Identity = 70/145 (48.28%), Postives = 101/145 (69.66%), Query Frame = 1


Query: 3   DFETIALTQAIFDVFKNGVVEKMTYPGSFIVPCSIGGMDLGCALCNLGANINLIFLSIFK 62
           D E + LT+    + +  +  K+  PGSF +PC+IG  D    LC+LG ++NL+ LSIF+
Sbjct: 326 DNEKVMLTEECSAILQRELPPKLKDPGSFTIPCTIGDFDFDKVLCDLGESVNLMPLSIFR 385

Query: 63  KLGIGEVQPTQMAFQITDKSITRPKGKIEEVLVKVDKFLFHAYFVILDFKADREVPIILG 122
           KLG+GEV+ T +  Q+ D+SI  P+G IE+VLVKVDKFLF   F++LD + DR+VP+ILG
Sbjct: 386 KLGLGEVKLTTVCLQLADRSIKHPRGIIEDVLVKVDKFLFPIDFIVLDMEEDRDVPLILG 445

Query: 123 WPFLSIGRALINVHQRELTMRLNDQ 148
            PFL+  R LI+ HQ +L +R+ D+
Sbjct: 446 RPFLATSRTLIDFHQGKLILRVQDE 470

[Close]

BLAST of MELO3C012768 vs. TrEMBL
Match: U5CWW5_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00000010 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.5e-29
Identity = 70/147 (47.62%), Postives = 95/147 (64.63%), Query Frame = 1


Query: 1   MNDFETIALTQAIFDVFKNGVVEKMTYPGSFIVPCSIGGMDLGCALCNLGANINLIFLSI 60
           + +FET+ALT+    + K+ +  K+  PGSF +P SIGG D                   
Sbjct: 89  LGEFETVALTEGCSAMLKSKIPPKLKDPGSFTIPISIGGRD------------------- 148

Query: 61  FKKLGIGEVQPTQMAFQITDKSITRPKGKIEEVLVKVDKFLFHAYFVILDFKADREVPII 120
             KLGIGE +PT +  Q+ D+S+  P+GKIE+VLV+VDKF+F A F+ILD++ DREVPII
Sbjct: 149 --KLGIGEARPTTVTLQLADRSMAHPEGKIEDVLVQVDKFIFPADFIILDYEEDREVPII 208

Query: 121 LGWPFLSIGRALINVHQRELTMRLNDQ 148
           LG PFL+ GR LI+V + ELTMR  D+
Sbjct: 209 LGRPFLATGRTLIDVEKGELTMRAQDE 214

[Close]

BLAST of MELO3C012768 vs. TrEMBL
Match: A0A0S3RK86_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G063900 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.5e-28
Identity = 66/143 (46.15%), Postives = 99/143 (69.23%), Query Frame = 1


Query: 5   ETIALTQAIFDVFKNGVVEKMTYPGSFIVPCSIGGMDLGCALCNLGANINLIFLSIFKKL 64
           ETI +      + +  +  K   PGSF +PC+IG + +G AL +LGA+INL+ LS+FKK+
Sbjct: 85  ETIEVQGQCSAIIQKLLPPKFKDPGSFTIPCTIGELAIGNALIDLGASINLMPLSMFKKI 144

Query: 65  GIGEVQPTQMAFQITDKSITRPKGKIEEVLVKVDKFLFHAYFVILDFKADREVPIILGWP 124
           G  E++PT+M  Q+ D+SI  P+G +E+VLVKVDKFLF   FV+++ K D E+P+ILG P
Sbjct: 145 GELELKPTRMTLQLADRSIKYPQGVVEDVLVKVDKFLFPVDFVVMEMKEDIEIPLILGRP 204

Query: 125 FLSIGRALINVHQRELTMRLNDQ 148
           F+   R LI+V + +L +R+ D+
Sbjct: 205 FMKTARVLIDVDEGKLKVRVEDE 227

[Close]

BLAST of MELO3C012768 vs. NCBI nr
Match: gi|659093662|ref|XP_008447648.1| (PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo])

HSP 1 Score: 197.2 bits (500), Expect = 2.0e-47
Identity = 101/147 (68.71%), Postives = 120/147 (81.63%), Query Frame = 1


Query: 1   MNDFETIALTQAIFDVFKNGVVEKMTYPGSFIVPCSIGGMDLGCALCNLGANINLIFLSI 60
           +NDF+T+AL QA  D++KNGV+EKMTYPGSF VPCSI GMDLG  LC+LGA+INL+ LSI
Sbjct: 18  INDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSI 77

Query: 61  FKKLGIGEVQPTQMAFQITDKSITRPKGKIEEVLVKVDKFLFHAYFVILDFKADREVPII 120
           FKKL I EVQPT M FQ+ D+SIT PKGKIE+VLVKVDKFLF A F+ILD++AD EV II
Sbjct: 78  FKKLKIKEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLII 137

Query: 121 LGWPFLSIGRALINVHQRELTMRLNDQ 148
           L   FLS GRAL  +HQ ELT+  N++
Sbjct: 138 LRRLFLSTGRALTYIHQGELTVFFNNK 164

[Close]

BLAST of MELO3C012768 vs. NCBI nr
Match: gi|659111569|ref|XP_008455795.1| (PREDICTED: uncharacterized protein LOC103495890 [Cucumis melo])

HSP 1 Score: 196.1 bits (497), Expect = 4.5e-47
Identity = 99/147 (67.35%), Postives = 118/147 (80.27%), Query Frame = 1


Query: 1   MNDFETIALTQAIFDVFKNGVVEKMTYPGSFIVPCSIGGMDLGCALCNLGANINLIFLSI 60
           MN++ET+ LTQA  ++FKN V +KMTYP SF V CSI  MDLG  LCNLGA+INL+ LSI
Sbjct: 27  MNEYETVTLTQATSNIFKNMVQKKMTYPRSFTVSCSIDDMDLGHTLCNLGASINLMHLSI 86

Query: 61  FKKLGIGEVQPTQMAFQITDKSITRPKGKIEEVLVKVDKFLFHAYFVILDFKADREVPII 120
           FKKLG+ E QPT+M  Q  D+SITRP+GKI++VL+KVDKFLF A F+ILD++ADREVPII
Sbjct: 87  FKKLGMWEAQPTKMVLQFVDRSITRPEGKIDDVLIKVDKFLFLADFIILDYEADREVPII 146

Query: 121 LGWPFLSIGRALINVHQRELTMRLNDQ 148
           L   FL  G ALI+VHQ ELTM LNDQ
Sbjct: 147 LELSFLRTGHALIDVHQWELTMLLNDQ 173

[Close]

BLAST of MELO3C012768 vs. NCBI nr
Match: gi|659130345|ref|XP_008465121.1| (PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 2.3e-43
Identity = 94/146 (64.38%), Postives = 112/146 (76.71%), Query Frame = 1


Query: 2   NDFETIALTQAIFDVFKNGVVEKMTYPGSFIVPCSIGGMDLGCALCNLGANINLIFLSIF 61
           ND ET+ALT    D+ KNG  +KMT   SF VPCSI  MDLG  LC+LGA+INL+ LSIF
Sbjct: 8   NDCETVALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIF 67

Query: 62  KKLGIGEVQPTQMAFQITDKSITRPKGKIEEVLVKVDKFLFHAYFVILDFKADREVPIIL 121
           KKL I EVQP  M  Q  D+SI + +GKIE++LVKVDKFLFHA F+ILD++A++EVPII 
Sbjct: 68  KKLEIEEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIF 127

Query: 122 GWPFLSIGRALINVHQRELTMRLNDQ 148
           G PFLS G ALI+VHQ ELTMR ND+
Sbjct: 128 GRPFLSTGHALIDVHQGELTMRFNDE 153

[Close]

BLAST of MELO3C012768 vs. NCBI nr
Match: gi|985438230|ref|XP_015383504.1| (PREDICTED: uncharacterized protein LOC107176019 [Citrus sinensis])

HSP 1 Score: 162.9 bits (411), Expect = 4.2e-37
Identity = 77/147 (52.38%), Postives = 111/147 (75.51%), Query Frame = 1


Query: 1   MNDFETIALTQAIFDVFKNGVVEKMTYPGSFIVPCSIGGMDLGCALCNLGANINLIFLSI 60
           + +FET+ALT+    + ++ +  K+  PGSF +PCSIG      ALC+LGA+IN + LS+
Sbjct: 312 LGEFETVALTEESSHMLQSKIPTKLKDPGSFTIPCSIGNKYASRALCDLGASINFMPLSV 371

Query: 61  FKKLGIGEVQPTQMAFQITDKSITRPKGKIEEVLVKVDKFLFHAYFVILDFKADREVPII 120
           FK+LG+GE +PT +  Q+ D+S   P+GKIE+VLVKVDKF+F   F++LDF+A++E+PII
Sbjct: 372 FKQLGVGECRPTTVTLQLADRSHAYPEGKIEDVLVKVDKFIFPVDFIVLDFEAEKELPII 431

Query: 121 LGWPFLSIGRALINVHQRELTMRLNDQ 148
           LG PFL+ G+ LI+V + ELTMR+NDQ
Sbjct: 432 LGRPFLATGKTLIDVQKGELTMRVNDQ 458

[Close]

BLAST of MELO3C012768 vs. NCBI nr
Match: gi|985438636|ref|XP_015383625.1| (PREDICTED: uncharacterized protein LOC107176093 [Citrus sinensis])

HSP 1 Score: 160.2 bits (404), Expect = 2.7e-36
Identity = 76/132 (57.58%), Postives = 104/132 (78.79%), Query Frame = 1


Query: 16  VFKNGVVEKMTYPGSFIVPCSIGGMDLGCALCNLGANINLIFLSIFKKLGIGEVQPTQMA 75
           + ++ + +KM  PGSFI+PCS+G    G  LC+LGA+INL+ LS+FK+LG+GE +PT M 
Sbjct: 1   MLQSKIPQKMKDPGSFIIPCSLGTKYSGKTLCDLGASINLMSLSVFKQLGVGECRPTTMT 60

Query: 76  FQITDKSITRPKGKIEEVLVKVDKFLFHAYFVILDFKADREVPIILGWPFLSIGRALINV 135
            Q+ D+S   P+GKIE+VLVKVDKF+F   F++LDF+AD+EVPIILG PFL+ G+ LINV
Sbjct: 61  LQLADRSHVYPEGKIEDVLVKVDKFIFPVDFIVLDFEADKEVPIILGRPFLATGKTLINV 120

Query: 136 HQRELTMRLNDQ 148
            + ELTMR+N+Q
Sbjct: 121 QKGELTMRVNNQ 132

The following BLAST results are available for this feature:

BLAST of MELO3C012768 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S3QWS7_PHAAN	1.6e-35	52.38	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G023800 PE=...	[more]
A0A151SV10_CAJCA	8.8e-34	53.24	Retrovirus-related Pol polyprotein from transposon opus OS=Cajanus cajan GN=KK1_...	[more]
A5AZ88_VITVI	4.8e-32	48.28	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1	[more]
U5CWW5_AMBTC	8.5e-29	47.62	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00000010 PE=4 SV=...	[more]
A0A0S3RK86_PHAAN	5.5e-28	46.15	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G063900 PE=...	[more]

BLAST of MELO3C012768 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093662\|ref\|XP_008447648.1\|	2.0e-47	68.71	PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo]	[more]
gi\|659111569\|ref\|XP_008455795.1\|	4.5e-47	67.35	PREDICTED: uncharacterized protein LOC103495890 [Cucumis melo]	[more]
gi\|659130345\|ref\|XP_008465121.1\|	2.3e-43	64.38	PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo]	[more]
gi\|985438230\|ref\|XP_015383504.1\|	4.2e-37	52.38	PREDICTED: uncharacterized protein LOC107176019 [Citrus sinensis]	[more]
gi\|985438636\|ref\|XP_015383625.1\|	2.7e-36	57.58	PREDICTED: uncharacterized protein LOC107176093 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015940	pantothenate biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003864	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
molecular_function	GO:0003824	catalytic activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU63326	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012768T1	MELO3C012768T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU63326	MU63326	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33067	FAMILY NOT NAMED	coord: 24..137 score: 4.8
None	No IPR available	PANTHER	PTHR33067:SF2	SUBFAMILY NOT NAMED	coord: 24..137 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012768	Silver-seed gourd	carmeB0433
MELO3C012768	Cucumber (Chinese Long) v3	cucmeB560
MELO3C012768	Watermelon (97103) v2	mewmbB219
MELO3C012768	Wax gourd	mewgoB262
MELO3C012768	Cucumber (Gy14) v1	cgymeB082
MELO3C012768	Cucurbita moschata (Rifu)	cmomeB322
MELO3C012768	Wild cucumber (PI 183967)	cpimeB549
MELO3C012768	Cucumber (Chinese Long) v2	cumeB543
MELO3C012768	Watermelon (Charleston Gray)	mewcgB173
MELO3C012768	Watermelon (97103) v1	mewmB194
MELO3C012768	Cucurbita pepo (Zucchini)	cpemeB127
MELO3C012768	Bottle gourd (USVL1VR-Ls)	lsimeB201
MELO3C012768	Cucumber (Gy14) v2	cgybmeB481