MELO3C012765 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012765
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA-directed RNA polymerase subunit beta'
Location	chr1 : 23320428 .. 23321035 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCTAATCTTAAGGAGGAGGTAAAAGAGCATAAAGATAAGAGCGATAACAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCAGGTGATCATCCCGACGGAAGGGGCATGCCACCTGCGATCACGTTGGATAATATATTATATCACTGGAGAATATGTACGAGGCGTAACACTTTATCCAAGCTATACTTGCCCGCCCATTTGTTAGAGCCTTGTAAGCATGTGACTCAGCGATTTACAGACTGGTGGACCATGAAGCATGGGACCTATTTTGAGGATAACAGACACCATTTGGTGAGTAGTGCTTTCCTCCCCCTTCACAGCCTAGACTACCAAAGAACCGAGGAAGCAACCTGGGTGGTAAAGAAATTCGATTGGTTGAGGCGATGGCTCCTAATCTTGAGGAGGAGGTAAAGGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCAGGTGATCATCCCGACGGAAGGGGTTTAAGTGCTTTGGCAGTTCCTGATGTTCCACCATTGGTTTGCACGTTTTCCCTTCTAAAATTTTTTTTTTAA

mRNA sequence

ATGGCTCCTAATCTTAAGGAGGAGGTAAAAGAGCATAAAGATAAGAGCGATAACAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCGAAGCCTAGACTACCAAAGAACCGAGGAAGCAACCTGGGTGGTAAAGAAATTCGATTGGTTGAGGCGATGGCTCCTAATCTTGAGGAGGAGGTAAAGGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCAGGTGATCATCCCGACGGAAGGGGTTTAAGTGCTTTGGCAGTTCCTGATGTTCCACCATTGGTTTGCACGTTTTCCCTTCTAAAATTTTTTTTTTAA

Coding sequence (CDS)

ATGGCTCCTAATCTTAAGGAGGAGGTAAAAGAGCATAAAGATAAGAGCGATAACAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCGAAGCCTAGACTACCAAAGAACCGAGGAAGCAACCTGGGTGGTAAAGAAATTCGATTGGTTGAGGCGATGGCTCCTAATCTTGAGGAGGAGGTAAAGGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCAGGTGATCATCCCGACGGAAGGGGTTTAAGTGCTTTGGCAGTTCCTGATGTTCCACCATTGGTTTGCACGTTTTCCCTTCTAAAATTTTTTTTTTAA

Protein sequence

MAPNLKEEVKEHKDKSDNSKSDRHWKRPLKKAKPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDGRGLSALAVPDVPPLVCTFSLLKFFF*

Homology

[Close]

BLAST of MELO3C012765 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-26
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1


Query: 32  AKPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGD 91
           ++PRLPKNRGSNLGGKEI LVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGD
Sbjct: 321 SQPRLPKNRGSNLGGKEIGLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGD 380

Query: 92  HPD 95
           HPD
Sbjct: 381 HPD 383

[Close]

BLAST of MELO3C012765 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.0e-09
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = 1


Query: 1   MAPNLKEEVKEHKDKSDNSKSDRHWKRPLKKAK 34
           MAPNL+EEVKEHKD+SD+SKSDRHWKRPLKKAK
Sbjct: 344 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAK 376

HSP 2 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1


Query: 55 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHP 94
          MAP LE++V EHKDESD++KSDRHWKRPLKKAK     P
Sbjct: 1  MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKAKTPAAKP 39

[Close]

BLAST of MELO3C012765 vs. TrEMBL
Match: A0A0A0KQU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G264300 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.5e-07
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = 1


Query: 1  MAPNLKEEVKEHKDKSDNSKSDRHWKRPLKKAK 34
          MAP L+++V EHKD+SDN+KSDRHWKRPLKKAK
Sbjct: 1  MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKAK 33

[Close]

BLAST of MELO3C012765 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-26
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1


Query: 32  AKPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGD 91
           ++PRLPKNRGSNLGGKEI LVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGD
Sbjct: 321 SQPRLPKNRGSNLGGKEIGLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGD 380

Query: 92  HPD 95
           HPD
Sbjct: 381 HPD 383

[Close]

BLAST of MELO3C012765 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-08
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = 1


Query: 1   MAPNLKEEVKEHKDKSDNSKSDRHWKRPLKKAK 34
           MAPNL+EEVKEHKD+SD+SKSDRHWKRPLKKAK
Sbjct: 344 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAK 376

HSP 2 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1


Query: 55 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHP 94
          MAP LE++V EHKDESD++KSDRHWKRPLKKAK     P
Sbjct: 1  MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKAKTPAAKP 39

[Close]

BLAST of MELO3C012765 vs. NCBI nr
Match: gi|700195620|gb|KGN50797.1| (hypothetical protein Csa_5G264300 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = 1


Query: 1  MAPNLKEEVKEHKDKSDNSKSDRHWKRPLKKAK 34
          MAP L+++V EHKD+SDN+KSDRHWKRPLKKAK
Sbjct: 1  MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKAK 33

The following BLAST results are available for this feature:

BLAST of MELO3C012765 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB9_CUCME	1.1e-26	95.24	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCB9_CUCME	8.0e-09	90.91	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KQU9_CUCSA	7.5e-07	78.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G264300 PE=4 SV=1	[more]

BLAST of MELO3C012765 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136292\|gb\|ADN34118.1\|	1.6e-26	95.24	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|307136292\|gb\|ADN34118.1\|	1.2e-08	90.91	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|700195620\|gb\|KGN50797.1\|	1.1e-06	78.79	hypothetical protein Csa_5G264300 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012765T1	MELO3C012765T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 49..76 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012765	Silver-seed gourd	carmeB0433
MELO3C012765	Cucumber (Chinese Long) v3	cucmeB560
MELO3C012765	Watermelon (97103) v2	mewmbB219
MELO3C012765	Wax gourd	mewgoB262
MELO3C012765	Cucumber (Gy14) v1	cgymeB082
MELO3C012765	Cucurbita moschata (Rifu)	cmomeB322
MELO3C012765	Wild cucumber (PI 183967)	cpimeB549
MELO3C012765	Cucumber (Chinese Long) v2	cumeB543
MELO3C012765	Watermelon (Charleston Gray)	mewcgB173
MELO3C012765	Watermelon (97103) v1	mewmB194
MELO3C012765	Cucurbita pepo (Zucchini)	cpemeB127
MELO3C012765	Bottle gourd (USVL1VR-Ls)	lsimeB201
MELO3C012765	Cucumber (Gy14) v2	cgybmeB481