MELO3C012760 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012760
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	GPN-loop GTPase 1-like protein
Location	chr1 : 23189581 .. 23189877 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACTACAAGGCAGAGCTTGACAAGAGAGTTGCCGAAAAGCAGCGATTAGAGGAAAAGCGCAGACGGGAAAACATGGAGAAGTTGCGGAGAGATATGGAGAGCTCCAAGGGACAAACAGTGGTTTTGAGCACTGGTTTGAAGGACGACGAAAGTAAAACTAAGATGGTTGACAATGATGATGAAGAGATTGATGAAGAAGATGAAGACAATGATGATTATGATAGATTTACCGAAGAGGATGATGCCATCGATGAGGATGAAGATGAAGAGGTTGCTAGATTCTCCTTTTAG

mRNA sequence

ATGGAAAACTACAAGGCAGAGCTTGACAAGAGAGTTGCCGAAAAGCAGCGATTAGAGGAAAAGCGCAGACGGGAAAACATGGAGAAGTTGCGGAGAGATATGGAGAGCTCCAAGGGACAAACAGTGGTTTTGAGCACTGGTTTGAAGGACGACGAAAGTAAAACTAAGATGGTTGACAATGATGATGAAGAGATTGATGAAGAAGATGAAGACAATGATGATTATGATAGATTTACCGAAGAGGATGATGCCATCGATGAGGATGAAGATGAAGAGGTTGCTAGATTCTCCTTTTAG

Coding sequence (CDS)

ATGGAAAACTACAAGGCAGAGCTTGACAAGAGAGTTGCCGAAAAGCAGCGATTAGAGGAAAAGCGCAGACGGGAAAACATGGAGAAGTTGCGGAGAGATATGGAGAGCTCCAAGGGACAAACAGTGGTTTTGAGCACTGGTTTGAAGGACGACGAAAGTAAAACTAAGATGGTTGACAATGATGATGAAGAGATTGATGAAGAAGATGAAGACAATGATGATTATGATAGATTTACCGAAGAGGATGATGCCATCGATGAGGATGAAGATGAAGAGGTTGCTAGATTCTCCTTTTAG

Protein sequence

MENYKAELDKRVAEKQRLEEKRRRENMEKLRRDMESSKGQTVVLSTGLKDDESKTKMVDNDDEEIDEEDEDNDDYDRFTEEDDAIDEDEDEEVARFSF*

Homology

[Close]

BLAST of MELO3C012760 vs. Swiss-Prot
Match: GPN1_DICDI (GPN-loop GTPase 1 OS=Dictyostelium discoideum GN=gpn1 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-07
Identity = 31/95 (32.63%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 4   YKAELDKRVAEKQRLEEKRRRENMEKLRRDMESSKGQTV---VLSTGLKDDESKTKMVDN 63
           YKA+L+K   +K   E+    +N EKL+RD+E SKG  V         ++++ KTK + +
Sbjct: 284 YKADLEKIKKQKSDKEQAEANKNWEKLKRDLEESKGAKVEYDFKKEKKRENQEKTKNIYD 343

Query: 64  DDEE---IDEEDEDNDDYDRFTEEDDAIDEDEDEE 93
           D+E+    D + ED+ +Y+ + +E +  D + +EE
Sbjct: 344 DEEDDYRDDRDMEDSGEYESYEDEQEEGDYENEEE 378

[Close]

BLAST of MELO3C012760 vs. TrEMBL
Match: A0A0A0LHM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G076540 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-43
Identity = 94/102 (92.16%), Postives = 97/102 (95.10%), Query Frame = 1


Query: 1   MENYKAELDKRVAEKQRLEEKRRRENMEKLRRDMESSKGQTVVLSTGLKDD----ESKTK 60
           MENYKAELDKRVAEKQRLEE+RRRENMEKLRRDMESSKGQTVVLSTGLKDD    +SKTK
Sbjct: 427 MENYKAELDKRVAEKQRLEEERRRENMEKLRRDMESSKGQTVVLSTGLKDDKSKTKSKTK 486

Query: 61  MVDNDDEEIDEEDEDNDDYDRFTEEDDAIDEDEDEEVARFSF 99
           MVDND EEIDEEDED+DDYDRFTEEDDAIDEDEDEEVARFSF
Sbjct: 487 MVDNDVEEIDEEDEDDDDYDRFTEEDDAIDEDEDEEVARFSF 528

[Close]

BLAST of MELO3C012760 vs. TrEMBL
Match: A0A061EUE6_THECC (P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_020790 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 8.0e-31
Identity = 66/99 (66.67%), Postives = 89/99 (89.90%), Query Frame = 1


Query: 1   MENYKAELDKRVAEKQRLEEKRRRENMEKLRRDMESSKGQTVVLSTGLKDDESKTKMVDN 60
           MENYKA+LDKR AEKQRLEE+RR+E+M+KLRRDME S+G+TVVLSTGLKD + + + + +
Sbjct: 211 MENYKADLDKRRAEKQRLEEERRKESMDKLRRDMEQSRGETVVLSTGLKDKDGRRRTMMD 270

Query: 61  DDEEIDEEDEDNDDYDRFT-EEDDAIDEDEDEEVARFSF 99
            ++E++E++E++DDY+RFT EE+D IDEDEDEE+ARFSF
Sbjct: 271 PEDELEEQEEEDDDYERFTEEEEDLIDEDEDEEIARFSF 309

[Close]

BLAST of MELO3C012760 vs. TrEMBL
Match: A0A061EMM5_THECC (P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_020790 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 8.0e-31
Identity = 66/99 (66.67%), Postives = 89/99 (89.90%), Query Frame = 1


Query: 1   MENYKAELDKRVAEKQRLEEKRRRENMEKLRRDMESSKGQTVVLSTGLKDDESKTKMVDN 60
           MENYKA+LDKR AEKQRLEE+RR+E+M+KLRRDME S+G+TVVLSTGLKD + + + + +
Sbjct: 308 MENYKADLDKRRAEKQRLEEERRKESMDKLRRDMEQSRGETVVLSTGLKDKDGRRRTMMD 367

Query: 61  DDEEIDEEDEDNDDYDRFT-EEDDAIDEDEDEEVARFSF 99
            ++E++E++E++DDY+RFT EE+D IDEDEDEE+ARFSF
Sbjct: 368 PEDELEEQEEEDDDYERFTEEEEDLIDEDEDEEIARFSF 406

[Close]

BLAST of MELO3C012760 vs. TrEMBL
Match: I1MRT2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G035700 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.5e-29
Identity = 65/98 (66.33%), Postives = 80/98 (81.63%), Query Frame = 1


Query: 1   MENYKAELDKRVAEKQRLEEKRRRENMEKLRRDMESSKGQTVVLSTGLKDDESKTKMVDN 60
           ME YKA+LDKR  EKQRLEE RR+E+M+KLRRDME S G+TVVLSTGLKD E+   M+D 
Sbjct: 297 METYKADLDKRREEKQRLEEDRRKESMDKLRRDMEKSGGETVVLSTGLKDKEASKSMMDE 356

Query: 61  DDEEIDEEDEDNDDYDRFTEEDDAIDEDEDEEVARFSF 99
           +DE+ + +D+D+DD   +TEE+DAIDEDEDEEV RF F
Sbjct: 357 EDEDEEMDDDDDDDLGIYTEEEDAIDEDEDEEVDRFGF 394

[Close]

BLAST of MELO3C012760 vs. TrEMBL
Match: A0A0B2P6V6_GLYSO (GPN-loop GTPase 1 like OS=Glycine soja GN=glysoja_004300 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.5e-29
Identity = 65/98 (66.33%), Postives = 80/98 (81.63%), Query Frame = 1


Query: 1   MENYKAELDKRVAEKQRLEEKRRRENMEKLRRDMESSKGQTVVLSTGLKDDESKTKMVDN 60
           ME YKA+LDKR  EKQRLEE RR+E+M+KLRRDME S G+TVVLSTGLKD E+   M+D 
Sbjct: 297 METYKADLDKRREEKQRLEEDRRKESMDKLRRDMEKSGGETVVLSTGLKDKEASKSMMDE 356

Query: 61  DDEEIDEEDEDNDDYDRFTEEDDAIDEDEDEEVARFSF 99
           +DE+ + +D+D+DD   +TEE+DAIDEDEDEEV RF F
Sbjct: 357 EDEDEEMDDDDDDDLGIYTEEEDAIDEDEDEEVDRFGF 394

[Close]

BLAST of MELO3C012760 vs. TAIR10
Match: AT4G21800.1 (AT4G21800.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-21
Identity = 50/93 (53.76%), Postives = 68/93 (73.12%), Query Frame = 1


Query: 1   MENYKAELDKRVAEKQRLEEKRRRENMEKLRRDMESSKGQTVVLSTGLKD-DESKTKMVD 60
           ME YKA+LD R A+K+RLEE+R++  MEKLR+DMESS+G TVVL+TGLKD D ++  M++
Sbjct: 288 METYKADLDMRKADKERLEEERKKHEMEKLRKDMESSQGGTVVLNTGLKDRDATEKMMLE 347

Query: 61  NDDEEIDEEDEDNDDYDRFTEEDDAIDEDEDEE 93
            DDE+   EDE+        + DDAIDED++++
Sbjct: 348 EDDEDFQVEDEE--------DSDDAIDEDDEDD 372

[Close]

BLAST of MELO3C012760 vs. NCBI nr
Match: gi|659082323|ref|XP_008441779.1| (PREDICTED: GPN-loop GTPase 1 [Cucumis melo])

HSP 1 Score: 189.5 bits (480), Expect = 2.8e-45
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 1


Query: 1   MENYKAELDKRVAEKQRLEEKRRRENMEKLRRDMESSKGQTVVLSTGLKDDESKTKMVDN 60
           MENYKAELDKRVAEKQRLEE+RRRENMEKLRRDMESSKGQTVVLSTGLKDD+SKTKMVDN
Sbjct: 309 MENYKAELDKRVAEKQRLEEERRRENMEKLRRDMESSKGQTVVLSTGLKDDKSKTKMVDN 368

Query: 61  DDEEIDEEDEDNDDYDRFTEEDDAIDEDEDEEVARFSF 99
           DD EIDEEDED+DDYDRFTEEDDAIDEDEDEEVARFSF
Sbjct: 369 DDVEIDEEDEDDDDYDRFTEEDDAIDEDEDEEVARFSF 406

[Close]

BLAST of MELO3C012760 vs. NCBI nr
Match: gi|449470212|ref|XP_004152812.1| (PREDICTED: GPN-loop GTPase 1 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 2.6e-43
Identity = 94/102 (92.16%), Postives = 97/102 (95.10%), Query Frame = 1


Query: 1   MENYKAELDKRVAEKQRLEEKRRRENMEKLRRDMESSKGQTVVLSTGLKDD----ESKTK 60
           MENYKAELDKRVAEKQRLEE+RRRENMEKLRRDMESSKGQTVVLSTGLKDD    +SKTK
Sbjct: 309 MENYKAELDKRVAEKQRLEEERRRENMEKLRRDMESSKGQTVVLSTGLKDDKSKTKSKTK 368

Query: 61  MVDNDDEEIDEEDEDNDDYDRFTEEDDAIDEDEDEEVARFSF 99
           MVDND EEIDEEDED+DDYDRFTEEDDAIDEDEDEEVARFSF
Sbjct: 369 MVDNDVEEIDEEDEDDDDYDRFTEEDDAIDEDEDEEVARFSF 410

[Close]

BLAST of MELO3C012760 vs. NCBI nr
Match: gi|700206179|gb|KGN61298.1| (hypothetical protein Csa_2G076540 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 2.6e-43
Identity = 94/102 (92.16%), Postives = 97/102 (95.10%), Query Frame = 1


Query: 1   MENYKAELDKRVAEKQRLEEKRRRENMEKLRRDMESSKGQTVVLSTGLKDD----ESKTK 60
           MENYKAELDKRVAEKQRLEE+RRRENMEKLRRDMESSKGQTVVLSTGLKDD    +SKTK
Sbjct: 427 MENYKAELDKRVAEKQRLEEERRRENMEKLRRDMESSKGQTVVLSTGLKDDKSKTKSKTK 486

Query: 61  MVDNDDEEIDEEDEDNDDYDRFTEEDDAIDEDEDEEVARFSF 99
           MVDND EEIDEEDED+DDYDRFTEEDDAIDEDEDEEVARFSF
Sbjct: 487 MVDNDVEEIDEEDEDDDDYDRFTEEDDAIDEDEDEEVARFSF 528

[Close]

BLAST of MELO3C012760 vs. NCBI nr
Match: gi|590658902|ref|XP_007034982.1| (P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-30
Identity = 66/99 (66.67%), Postives = 89/99 (89.90%), Query Frame = 1


Query: 1   MENYKAELDKRVAEKQRLEEKRRRENMEKLRRDMESSKGQTVVLSTGLKDDESKTKMVDN 60
           MENYKA+LDKR AEKQRLEE+RR+E+M+KLRRDME S+G+TVVLSTGLKD + + + + +
Sbjct: 308 MENYKADLDKRRAEKQRLEEERRKESMDKLRRDMEQSRGETVVLSTGLKDKDGRRRTMMD 367

Query: 61  DDEEIDEEDEDNDDYDRFT-EEDDAIDEDEDEEVARFSF 99
            ++E++E++E++DDY+RFT EE+D IDEDEDEE+ARFSF
Sbjct: 368 PEDELEEQEEEDDDYERFTEEEEDLIDEDEDEEIARFSF 406

[Close]

BLAST of MELO3C012760 vs. NCBI nr
Match: gi|590658906|ref|XP_007034983.1| (P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 [Theobroma cacao])

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-30
Identity = 66/99 (66.67%), Postives = 89/99 (89.90%), Query Frame = 1


Query: 1   MENYKAELDKRVAEKQRLEEKRRRENMEKLRRDMESSKGQTVVLSTGLKDDESKTKMVDN 60
           MENYKA+LDKR AEKQRLEE+RR+E+M+KLRRDME S+G+TVVLSTGLKD + + + + +
Sbjct: 211 MENYKADLDKRRAEKQRLEEERRKESMDKLRRDMEQSRGETVVLSTGLKDKDGRRRTMMD 270

Query: 61  DDEEIDEEDEDNDDYDRFT-EEDDAIDEDEDEEVARFSF 99
            ++E++E++E++DDY+RFT EE+D IDEDEDEE+ARFSF
Sbjct: 271 PEDELEEQEEEDDDYERFTEEEEDLIDEDEDEEIARFSF 309

The following BLAST results are available for this feature:

BLAST of MELO3C012760 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GPN1_DICDI	1.8e-07	32.63	GPN-loop GTPase 1 OS=Dictyostelium discoideum GN=gpn1 PE=3 SV=1	[more]

BLAST of MELO3C012760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHM2_CUCSA	1.8e-43	92.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G076540 PE=4 SV=1	[more]
A0A061EUE6_THECC	8.0e-31	66.67	P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform...	[more]
A0A061EMM5_THECC	8.0e-31	66.67	P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform...	[more]
I1MRT2_SOYBN	7.5e-29	66.33	Uncharacterized protein OS=Glycine max GN=GLYMA_17G035700 PE=4 SV=1	[more]
A0A0B2P6V6_GLYSO	7.5e-29	66.33	GPN-loop GTPase 1 like OS=Glycine soja GN=glysoja_004300 PE=4 SV=1	[more]

BLAST of MELO3C012760 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21800.1	1.8e-21	53.76	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]

BLAST of MELO3C012760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082323\|ref\|XP_008441779.1\|	2.8e-45	95.92	PREDICTED: GPN-loop GTPase 1 [Cucumis melo]	[more]
gi\|449470212\|ref\|XP_004152812.1\|	2.6e-43	92.16	PREDICTED: GPN-loop GTPase 1 [Cucumis sativus]	[more]
gi\|700206179\|gb\|KGN61298.1\|	2.6e-43	92.16	hypothetical protein Csa_2G076540 [Cucumis sativus]	[more]
gi\|590658902\|ref\|XP_007034982.1\|	1.1e-30	66.67	P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform...	[more]
gi\|590658906\|ref\|XP_007034983.1\|	1.1e-30	66.67	P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0009790	embryo development
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005874	microtubule
molecular_function	GO:0003924	GTPase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012760T1	MELO3C012760T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 1..33 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012760	Wax gourd	mewgoB262
MELO3C012760	Cucumber (Gy14) v1	cgymeB082
MELO3C012760	Cucurbita moschata (Rifu)	cmomeB322
MELO3C012760	Wild cucumber (PI 183967)	cpimeB549
MELO3C012760	Cucumber (Chinese Long) v2	cumeB543
MELO3C012760	Watermelon (Charleston Gray)	mewcgB173
MELO3C012760	Watermelon (97103) v1	mewmB194
MELO3C012760	Cucurbita pepo (Zucchini)	cpemeB127
MELO3C012760	Bottle gourd (USVL1VR-Ls)	lsimeB201
MELO3C012760	Cucumber (Gy14) v2	cgybmeB481
MELO3C012760	Silver-seed gourd	carmeB0433
MELO3C012760	Cucumber (Chinese Long) v3	cucmeB560
MELO3C012760	Watermelon (97103) v2	mewmbB219