MELO3C012745 (gene) Melon (DHL92) v3.5.1

NameMELO3C012745
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionUracil-DNA glycosylase
Locationchr1 : 22823564 .. 22823735 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAATGACATATTGCGACGACGTTGTCGACGAGGACGAGGGAGACTCCACGTACGCGACGACCACCGCTTCGGAAGACATTCACTACATTGAGACGACAAACGAATGGTCTCAATGGCACGACGAACTAGCCGAATCGATGTTCATCGGCAGTTGCATAACGCTTAGATAA

mRNA sequence

GGAAATGACATATTGCGACGACGTTGTCGACGAGGACGAGGGAGACTCCACGTACGCGACGACCACCGCTTCGGAAGACATTCACTACATTGAGACGACAAACGAATGGTCTCAATGGCACGACGAACTAGCCGAATCGATGTTCATCGGCAGTTGCATAACGCTTAGATAA

Coding sequence (CDS)

GGAAATGACATATTGCGACGACGTTGTCGACGAGGACGAGGGAGACTCCACGTACGCGACGACCACCGCTTCGGAAGACATTCACTACATTGAGACGACAAACGAATGGTCTCAATGGCACGACGAACTAGCCGAATCGATGTTCATCGGCAGTTGCATAACGCTTAGATAA

Protein sequence

EMTYCDDVVDEDEGDSTYATTTASEDIHYIETTNEWSQWHDELAESMFIGSCITLR*
BLAST of MELO3C012745 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-16
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 1

Query: 1   EMTYCDDVVDEDEGDSTYATTTASEDIHYIETTNEWSQWHDELAESMF 49
           EMTYC+DV DEDEGDSTYATTTASEDI YIETTNEWSQW D+LA SMF
Sbjct: 282 EMTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMF 329

BLAST of MELO3C012745 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.0e-07
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1

Query: 1   EMTYCDDVVDEDEGDSTYATTTASEDIHYIETTNEWSQWHDELAESMFIGS 52
           EMT  D   + DE DST+AT TA++DIHYIET+NEWSQW D LAE +   S
Sbjct: 310 EMTNFDIEDNIDEVDSTHAT-TAADDIHYIETSNEWSQWRDNLAEEIMTSS 359

BLAST of MELO3C012745 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-16
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 1

Query: 1   EMTYCDDVVDEDEGDSTYATTTASEDIHYIETTNEWSQWHDELAESMF 49
           EMTYC+DV DEDEGDSTYATTTASEDI YIETTNEWSQW D+LA SMF
Sbjct: 282 EMTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMF 329

BLAST of MELO3C012745 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 4.3e-14
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = 1

Query: 1   EMTYCDDVVDEDEGDSTYATTTASEDIHYIETTNEWSQWHDELAESMF 49
           EMTYCDDV D DEGD  YATTT  E+IHYIE TNEWSQW D+LAESMF
Sbjct: 141 EMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMF 188

BLAST of MELO3C012745 vs. NCBI nr
Match: gi|659126170|ref|XP_008463047.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 8.9e-12
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 1

Query: 1   EMTYCDDVVDEDEGDSTYATTTASEDIHYIETTNEWSQWHDELAESMFI 50
           EMT CDD+ D DEG+S Y  T A EDI YIETTNEWSQW+D+LAE++FI
Sbjct: 202 EMTNCDDIDDVDEGNSAYTKTIAIEDIKYIETTNEWSQWYDKLAEALFI 250

BLAST of MELO3C012745 vs. NCBI nr
Match: gi|659074567|ref|XP_008437673.1| (PREDICTED: uncharacterized protein LOC103483014 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 4.1e-09
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 1

Query: 12  DEGDSTYATTTASEDIHYIETTNEWSQWHDELAESMFI 50
           DEGDS YATT A+EDI YIE TNEWSQW DELAE+MFI
Sbjct: 206 DEGDSVYATTVAAEDIKYIEKTNEWSQWCDELAEAMFI 243

BLAST of MELO3C012745 vs. NCBI nr
Match: gi|659125597|ref|XP_008462767.1| (PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 4.1e-09
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 1

Query: 1   EMTYCDDVVDEDEGDSTYATTTASEDIHYIETTNEWSQWHDELAESMFI 50
           EMT  +D+ D +E DS YATTT  ++I YIETTNEW+QW DEL+++MFI
Sbjct: 106 EMTNGEDLYDINEEDSAYATTTTGDNIQYIETTNEWTQWQDELSKAMFI 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBB2_CUCME1.1e-1687.50Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME6.0e-0760.78Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|307135889|gb|ADN33754.1|1.6e-1687.50retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659099182|ref|XP_008450472.1|4.3e-1479.17PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo][more]
gi|659126170|ref|XP_008463047.1|8.9e-1269.39PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
gi|659074567|ref|XP_008437673.1|4.1e-0981.58PREDICTED: uncharacterized protein LOC103483014 [Cucumis melo][more]
gi|659125597|ref|XP_008462767.1|4.1e-0961.22PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012745T1MELO3C012745T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None