MELO3C012743 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C012743
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionT-box transcription factor TBX4
Locationchr1 : 22785042 .. 22785233 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATTTATCAAGCCATGGCCAAAATACAAATTTTAGAAAAAGGGTGTTCTTCAAATGGAACGTTAATGGAAGTGAAGAATTCAATTTCCTCTAGAAATTCTCCATTTCCAAATGGAGAAGTTGGAAACCAATGGTTGTATGATTTGGTGAAGAGCATTTCATTTGGGTGTTCTACGGAGAAAGGGTGA

mRNA sequence

ATGGCGATTTATCAAGCCATGGCCAAAATACAAATTTTAGAAAAAGGGTGTTCTTCAAATGGAACGTTAATGGAAGTGAAGAATTCAATTTCCTCTAGAAATTCTCCATTTCCAAATGGAGAAGTTGGAAACCAATGGTTGTATGATTTGGTGAAGAGCATTTCATTTGGGTGTTCTACGGAGAAAGGGTGA

Coding sequence (CDS)

ATGGCGATTTATCAAGCCATGGCCAAAATACAAATTTTAGAAAAAGGGTGTTCTTCAAATGGAACGTTAATGGAAGTGAAGAATTCAATTTCCTCTAGAAATTCTCCATTTCCAAATGGAGAAGTTGGAAACCAATGGTTGTATGATTTGGTGAAGAGCATTTCATTTGGGTGTTCTACGGAGAAAGGGTGA

Protein sequence

MAIYQAMAKIQILEKGCSSNGTLMEVKNSISSRNSPFPNGEVGNQWLYDLVKSISFGCSTEKG*
Homology
[Close]
BLAST of MELO3C012743 vs. TrEMBL
Match: A0A0A0KK07_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499220 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.5e-19
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 1 

Query: 1   MAIYQAMAKIQILEKGCSSNGTLMEVKNSISSRNSPFPNGEVGNQWLYDLVKSISFGCST 60
           MAIYQA AKIQI E+GCSS+GTLMEVKNS+SSRN PFP G +GNQ LY+LVK ISFGCS 
Sbjct: 306 MAIYQATAKIQIPEEGCSSSGTLMEVKNSVSSRNLPFPKGGIGNQSLYNLVKGISFGCSM 365

Query: 61  EKG 64
           +KG
Sbjct: 366 QKG 368

[Close]
BLAST of MELO3C012743 vs. NCBI nr
Match: gi|449451613|ref|XP_004143556.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 5.0e-19
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 1 

Query: 1   MAIYQAMAKIQILEKGCSSNGTLMEVKNSISSRNSPFPNGEVGNQWLYDLVKSISFGCST 60
           MAIYQA AKIQI E+GCSS+GTLMEVKNS+SSRN PFP G +GNQ LY+LVK ISFGCS 
Sbjct: 306 MAIYQATAKIQIPEEGCSSSGTLMEVKNSVSSRNLPFPKGGIGNQSLYNLVKGISFGCSM 365

Query: 61  EKG 64
           +KG
Sbjct: 366 QKG 368

[Close]
BLAST of MELO3C012743 vs. NCBI nr
Match: gi|659080025|ref|XP_008440570.1| (PREDICTED: E3 ubiquitin-protein ligase RING1 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 5.9e-12
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 1 

Query: 1   MAIYQAMAKIQILEKGCSSNGTLMEVKNSISSRNSPFPNGEVGNQWLYDLVKSISFGCST 60
           MAIYQ   KIQI E+GCSSNGTLMEVK+S+SS+N       +GNQ LY+LVKSISFG S 
Sbjct: 306 MAIYQVTTKIQIPEEGCSSNGTLMEVKDSVSSKN-------LGNQSLYNLVKSISFGHSM 361

Query: 61  EKG 64
           +KG
Sbjct: 366 QKG 361

The following BLAST results are available for this feature:
BLAST of MELO3C012743 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK07_CUCSA3.5e-1977.78Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499220 PE=4 SV=1[more]
BLAST of MELO3C012743 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449451613|ref|XP_004143556.1|5.0e-1977.78PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus][more]
gi|659080025|ref|XP_008440570.1|5.9e-1266.67PREDICTED: E3 ubiquitin-protein ligase RING1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012743T1MELO3C012743T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C012743Bottle gourd (USVL1VR-Ls)lsimeB190
MELO3C012743Cucumber (Gy14) v2cgybmeB462
MELO3C012743Silver-seed gourdcarmeB0013
MELO3C012743Silver-seed gourdcarmeB0085
MELO3C012743Cucumber (Chinese Long) v3cucmeB542
MELO3C012743Watermelon (97103) v2mewmbB231
MELO3C012743Wax gourdmewgoB261
MELO3C012743Cucumber (Gy14) v1cgymeB638
MELO3C012743Cucurbita maxima (Rimu)cmameB325
MELO3C012743Cucurbita maxima (Rimu)cmameB828
MELO3C012743Cucurbita moschata (Rifu)cmomeB812
MELO3C012743Wild cucumber (PI 183967)cpimeB531
MELO3C012743Cucumber (Chinese Long) v2cumeB527
MELO3C012743Watermelon (Charleston Gray)mewcgB184
MELO3C012743Watermelon (97103) v1mewmB210