MELO3C012735 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012735
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Senescence-associated protein
Location	chr1 : 22660978 .. 22661208 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGTCGGTGGTGCAACCCACTAAGGGATACACCAGCTAGGTTCCATGCGTCTTACGAGATTACTCACCTGTTAACTCACACACATGCCAGACTCCTTAGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCCACAGGCTGATGCCAAGAGTGCGCAGATGTCAAAGCCTGCCATAAGGCACACGCTGCCAGCCATGATCTGGACGACGACATCTCCACAGGCGTAA

mRNA sequence

ATGGTTGGTCGGTGGTGCAACCCACTAAGGGATACACCAGCTAGGTTCCATGCGTCTTACGAGATTACTCACCTGTTAACTCACACACATGCCAGACTCCTTAGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCCACAGGCTGATGCCAAGAGTGCGCAGATGTCAAAGCCTGCCATAAGGCACACGCTGCCAGCCATGATCTGGACGACGACATCTCCACAGGCGTAA

Coding sequence (CDS)

ATGGTTGGTCGGTGGTGCAACCCACTAAGGGATACACCAGCTAGGTTCCATGCGTCTTACGAGATTACTCACCTGTTAACTCACACACATGCCAGACTCCTTAGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCCACAGGCTGATGCCAAGAGTGCGCAGATGTCAAAGCCTGCCATAAGGCACACGCTGCCAGCCATGATCTGGACGACGACATCTCCACAGGCGTAA

Protein sequence

MVGRWCNPLRDTPARFHASYEITHLLTHTHARLLSPCFKTGRMGSPQADAKSAQMSKPAIRHTLPAMIWTTTSPQA*

Homology

[Close]

BLAST of MELO3C012735 vs. TrEMBL
Match: A0A0V0XGE3_9BILA (Uncharacterized protein (Fragment) OS=Trichinella patagoniensis GN=T12_6945 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 1


Query: 26 LTHTHARLLSPCFKTGRMGSPQADAKSAQMSKPAIRHTLPAMIWTTTSPQA 77
          LT  H RLL PCFKTGRMGSPQADA+SAQM K A R  LPA I  TTSP+A
Sbjct: 1  LTRAHVRLLGPCFKTGRMGSPQADARSAQMPKHAARRALPATIGATTSPRA 51

[Close]

BLAST of MELO3C012735 vs. TrEMBL
Match: A0A0R0GH91_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max GN=GLYMA_13G015000 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.5e-10
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1


Query: 2   VGRWCNPLRDTPARFHASYEITHLLTHTHARLLSPCFKTGRMGSPQADAKSAQ-MSKPAI 61
           VGR CNP  D   +   +  +T  LT TH RLL PCFKTGRMGSPQADA+SAQ ++ P +
Sbjct: 323 VGRRCNPQGDPTNQLPCALRVTRPLTRTHVRLLGPCFKTGRMGSPQADARSAQHINSPGL 382

Query: 62  RH 63
            H
Sbjct: 383 GH 384

[Close]

BLAST of MELO3C012735 vs. TrEMBL
Match: A0A161WPR5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_023431 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.6e-10
Identity = 38/69 (55.07%), Postives = 43/69 (62.32%), Query Frame = 1


Query: 8   PLRDTPA-RFHASYEITHLLTHTHARLLSPCFKTGRMGSPQADAKSAQMSKPAIRHTLPA 67
           P R  P+  F A Y   H LT TH RLL PCFKTGR+G+PQA A+S QM + A R  LP 
Sbjct: 812 PHRGIPSISFLAPYGFNHPLTRTHVRLLGPCFKTGRLGNPQACARSTQMPRHAKRRVLPT 871

Query: 68  MIWTTTSPQ 76
            I  T SPQ
Sbjct: 872 TIDATASPQ 880

[Close]

BLAST of MELO3C012735 vs. TrEMBL
Match: R0GIU2_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10012753mg PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-09
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 1


Query: 13 PARFHASYEITHLLTHTHARLLSPCFKTGRMGSPQADAKSAQMSKPAIR 62
          P  F A Y  TH LT TH RLL PCFKTGRMGSPQADA+S QM + A++
Sbjct: 23 PISFLAPYGFTHPLTRTHVRLLGPCFKTGRMGSPQADARSTQMPRHAVK 71

[Close]

BLAST of MELO3C012735 vs. TrEMBL
Match: A0A0L0M3W8_9BURK (Uncharacterized protein OS=Candidatus Paraburkholderia schumannianae GN=BSCH_00586 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.1e-09
Identity = 36/64 (56.25%), Postives = 38/64 (59.38%), Query Frame = 1


Query: 13 PARFHASYEITHLLTHTHARLLSPCFKTGRMGSPQADAKSAQMSKPAIRHTLPAMIWTTT 72
          P  F A Y  T  LT TH RLL PCFKTGRMG PQA   SAQM + A     PA I  T 
Sbjct: 24 PISFLAPYGFTRPLTRTHVRLLGPCFKTGRMGCPQASTGSAQMPRHAESARCPATIEATA 83

Query: 73 SPQA 77
          SP+A
Sbjct: 84 SPRA 87

[Close]

BLAST of MELO3C012735 vs. NCBI nr
Match: gi|954297942|gb|KRX87085.1| (hypothetical protein T12_6945, partial [Trichinella patagoniensis])

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 1


Query: 26 LTHTHARLLSPCFKTGRMGSPQADAKSAQMSKPAIRHTLPAMIWTTTSPQA 77
          LT  H RLL PCFKTGRMGSPQADA+SAQM K A R  LPA I  TTSP+A
Sbjct: 1  LTRAHVRLLGPCFKTGRMGSPQADARSAQMPKHAARRALPATIGATTSPRA 51

[Close]

BLAST of MELO3C012735 vs. NCBI nr
Match: gi|1021022684|gb|KZM80574.1| (hypothetical protein DCAR_032095 [Daucus carota subsp. sativus])

HSP 1 Score: 75.5 bits (184), Expect = 4.6e-11
Identity = 38/64 (59.38%), Postives = 41/64 (64.06%), Query Frame = 1


Query: 13  PARFHASYEITHLLTHTHARLLSPCFKTGRMGSPQADAKSAQMSKPAIRHTLPAMIWTTT 72
           P  F A Y   H LT TH RLL PCFKTGRMG+PQA A+S QM + A R  LP  I  T 
Sbjct: 187 PISFLAPYGFNHPLTRTHVRLLGPCFKTGRMGNPQACARSTQMPRHAKRRVLPTTIDATA 246

Query: 73  SPQA 77
           SPQA
Sbjct: 247 SPQA 250

[Close]

BLAST of MELO3C012735 vs. NCBI nr
Match: gi|1021535291|ref|XP_016164677.1| (PREDICTED: protein transport protein sec31-like [Arachis ipaensis])

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-10
Identity = 38/64 (59.38%), Postives = 42/64 (65.62%), Query Frame = 1


Query: 13  PARFHASYEITHLLTHTHARLLSPCFKTGRMGSPQADAKSAQMSKPAIRHTLPAMIWTTT 72
           P  F A     H LT TH RLL PCFKTGRMGSPQADA+SAQ+ K A    LP+ I T T
Sbjct: 130 PISFLAPCGFIHPLTRTHVRLLGPCFKTGRMGSPQADARSAQVPKHASGRALPSTIATMT 189

Query: 73  SPQA 77
            P+A
Sbjct: 190 YPRA 193

[Close]

BLAST of MELO3C012735 vs. NCBI nr
Match: gi|947068886|gb|KRH17777.1| (hypothetical protein GLYMA_13G015000, partial [Glycine max])

HSP 1 Score: 72.0 bits (175), Expect = 5.1e-10
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1


Query: 2   VGRWCNPLRDTPARFHASYEITHLLTHTHARLLSPCFKTGRMGSPQADAKSAQ-MSKPAI 61
           VGR CNP  D   +   +  +T  LT TH RLL PCFKTGRMGSPQADA+SAQ ++ P +
Sbjct: 323 VGRRCNPQGDPTNQLPCALRVTRPLTRTHVRLLGPCFKTGRMGSPQADARSAQHINSPGL 382

Query: 62  RH 63
            H
Sbjct: 383 GH 384

[Close]

BLAST of MELO3C012735 vs. NCBI nr
Match: gi|1021028512|gb|KZM86297.1| (hypothetical protein DCAR_023431 [Daucus carota subsp. sativus])

HSP 1 Score: 71.6 bits (174), Expect = 6.6e-10
Identity = 38/69 (55.07%), Postives = 43/69 (62.32%), Query Frame = 1


Query: 8   PLRDTPA-RFHASYEITHLLTHTHARLLSPCFKTGRMGSPQADAKSAQMSKPAIRHTLPA 67
           P R  P+  F A Y   H LT TH RLL PCFKTGR+G+PQA A+S QM + A R  LP 
Sbjct: 812 PHRGIPSISFLAPYGFNHPLTRTHVRLLGPCFKTGRLGNPQACARSTQMPRHAKRRVLPT 871

Query: 68  MIWTTTSPQ 76
            I  T SPQ
Sbjct: 872 TIDATASPQ 880

The following BLAST results are available for this feature:

BLAST of MELO3C012735 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0V0XGE3_9BILA	1.9e-11	72.55	Uncharacterized protein (Fragment) OS=Trichinella patagoniensis GN=T12_6945 PE=4...	[more]
A0A0R0GH91_SOYBN	3.5e-10	56.45	Uncharacterized protein (Fragment) OS=Glycine max GN=GLYMA_13G015000 PE=4 SV=1	[more]
A0A161WPR5_DAUCA	4.6e-10	55.07	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_023431 PE=4 SV=1	[more]
R0GIU2_9BRAS	1.8e-09	65.31	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10012753mg PE=4 SV=1	[more]
A0A0L0M3W8_9BURK	5.1e-09	56.25	Uncharacterized protein OS=Candidatus Paraburkholderia schumannianae GN=BSCH_005...	[more]

BLAST of MELO3C012735 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|954297942\|gb\|KRX87085.1\|	2.7e-11	72.55	hypothetical protein T12_6945, partial [Trichinella patagoniensis]	[more]
gi\|1021022684\|gb\|KZM80574.1\|	4.6e-11	59.38	hypothetical protein DCAR_032095 [Daucus carota subsp. sativus]	[more]
gi\|1021535291\|ref\|XP_016164677.1\|	1.7e-10	59.38	PREDICTED: protein transport protein sec31-like [Arachis ipaensis]	[more]
gi\|947068886\|gb\|KRH17777.1\|	5.1e-10	56.45	hypothetical protein GLYMA_13G015000, partial [Glycine max]	[more]
gi\|1021028512\|gb\|KZM86297.1\|	6.6e-10	55.07	hypothetical protein DCAR_023431 [Daucus carota subsp. sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012735T1	MELO3C012735T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012735	Cucumber (Gy14) v2	cgybmeB462
MELO3C012735	Silver-seed gourd	carmeB0013
MELO3C012735	Silver-seed gourd	carmeB0085
MELO3C012735	Cucumber (Chinese Long) v3	cucmeB542
MELO3C012735	Cucumber (Gy14) v1	cgymeB638
MELO3C012735	Cucurbita maxima (Rimu)	cmameB325
MELO3C012735	Cucurbita maxima (Rimu)	cmameB828
MELO3C012735	Cucurbita moschata (Rifu)	cmomeB812
MELO3C012735	Wild cucumber (PI 183967)	cpimeB531
MELO3C012735	Cucumber (Chinese Long) v2	cumeB527
MELO3C012735	Bottle gourd (USVL1VR-Ls)	lsimeB190