MELO3C012700 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C012700
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDomain of unknown function (DUF3598)
Locationchr1 : 21806899 .. 21807141 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTATGGGGAATTTACTAAGGATATGACCACATTCGCACCCACACCAATTCAAAATGCTCTAGCTGCACGACGATTCTTACTACGAATGATTGAACATATGGGGTTAGCAATTCAAATCACCACACCATATGACGTATTTGGGGTCCGAAGAAAATGTTGCATAATGATCGAGTCCTTGAAGGATTTCTCTTCTATGCGACTAATAGCTATTGCTTGCCTTGATGCGTACATAATGTAA

mRNA sequence

ATGGACTATGGGGAATTTACTAAGGATATGACCACATTCGCACCCACACCAATTCAAAATGCTCTAGCTGCACGACGATTCTTACTACGAATGATTGAACATATGGGGTTAGCAATTCAAATCACCACACCATATGACGTATTTGGGGTCCGAAGAAAATGTTGCATAATGATCGAGTCCTTGAAGGATTTCTCTTCTATGCGACTAATAGCTATTGCTTGCCTTGATGCGTACATAATGTAA

Coding sequence (CDS)

ATGGACTATGGGGAATTTACTAAGGATATGACCACATTCGCACCCACACCAATTCAAAATGCTCTAGCTGCACGACGATTCTTACTACGAATGATTGAACATATGGGGTTAGCAATTCAAATCACCACACCATATGACGTATTTGGGGTCCGAAGAAAATGTTGCATAATGATCGAGTCCTTGAAGGATTTCTCTTCTATGCGACTAATAGCTATTGCTTGCCTTGATGCGTACATAATGTAA

Protein sequence

MDYGEFTKDMTTFAPTPIQNALAARRFLLRMIEHMGLAIQITTPYDVFGVRRKCCIMIESLKDFSSMRLIAIACLDAYIM*
Homology
[Close]
BLAST of MELO3C012700 vs. NCBI nr
Match: gi|659069187|ref|XP_008448556.1| (PREDICTED: uncharacterized protein LOC103490696 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 2.1e-30
Identity = 68/80 (85.00%), Postives = 72/80 (90.00%), Query Frame = 1 

Query: 1  MDYGEFTKDMTTFAPTPIQNALAARRFLLRMIEHMGLAIQITTPYDVFGVRRKCCIMIES 60
          MDYGEFTKDMTTFAPTPIQNA    RFLLRM++HM  AIQITTPYDVFG++RKCCIMIES
Sbjct: 1  MDYGEFTKDMTTFAPTPIQNAPVTLRFLLRMVKHMRPAIQITTPYDVFGIQRKCCIMIES 60

Query: 61 LKDFSSMRLIAIACLDAYIM 81
          LKDFSSMR IAIACL AYIM
Sbjct: 61 LKDFSSMRPIAIACLGAYIM 80

[Close]
BLAST of MELO3C012700 vs. NCBI nr
Match: gi|778714054|ref|XP_011657178.1| (PREDICTED: uncharacterized protein LOC105435814 isoform X1 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 3.8e-16
Identity = 42/75 (56.00%), Postives = 57/75 (76.00%), Query Frame = 1 

Query: 6   FTKDMTTFAPTPIQNALAARRFLLRMIEHMGLAIQITTPYDVFGVRRKCCIMIESLKDFS 65
           F  D +TF+      AL A R L+R++EHMG +IQ+ TP ++FGV+RKCCIM+ESL+DFS
Sbjct: 78  FNTDPSTFSMAAYLRALVALRCLVRLVEHMGSSIQLNTPLELFGVKRKCCIMVESLRDFS 137

Query: 66  SMRLIAIACLDAYIM 81
           SM+ I  +CLDAY+M
Sbjct: 138 SMQPICTSCLDAYMM 152

[Close]
BLAST of MELO3C012700 vs. NCBI nr
Match: gi|778714056|ref|XP_011657179.1| (PREDICTED: uncharacterized protein LOC105435814 isoform X2 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 3.8e-16
Identity = 42/75 (56.00%), Postives = 57/75 (76.00%), Query Frame = 1 

Query: 6   FTKDMTTFAPTPIQNALAARRFLLRMIEHMGLAIQITTPYDVFGVRRKCCIMIESLKDFS 65
           F  D +TF+      AL A R L+R++EHMG +IQ+ TP ++FGV+RKCCIM+ESL+DFS
Sbjct: 77  FNTDPSTFSMAAYLRALVALRCLVRLVEHMGSSIQLNTPLELFGVKRKCCIMVESLRDFS 136

Query: 66  SMRLIAIACLDAYIM 81
           SM+ I  +CLDAY+M
Sbjct: 137 SMQPICTSCLDAYMM 151

The following BLAST results are available for this feature:
BLAST of MELO3C012700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069187|ref|XP_008448556.1|2.1e-3085.00PREDICTED: uncharacterized protein LOC103490696 [Cucumis melo][more]
gi|778714054|ref|XP_011657178.1|3.8e-1656.00PREDICTED: uncharacterized protein LOC105435814 isoform X1 [Cucumis sativus][more]
gi|778714056|ref|XP_011657179.1|3.8e-1656.00PREDICTED: uncharacterized protein LOC105435814 isoform X2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012700T1MELO3C012700T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C012700Wax gourdmewgoB244
MELO3C012700Cucumber (Gy14) v1cgymeB254
MELO3C012700Wild cucumber (PI 183967)cpimeB541
MELO3C012700Cucumber (Chinese Long) v2cumeB533
MELO3C012700Cucumber (Chinese Long) v2cumeB538
MELO3C012700Bottle gourd (USVL1VR-Ls)lsimeB197
MELO3C012700Cucumber (Gy14) v2cgybmeB471
MELO3C012700Cucumber (Chinese Long) v3cucmeB551