MELO3C012681 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012681
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, unclassified
Location	chr1 : 21282567 .. 21283300 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTCGATTTTCTAGATGAAGATATCATGACGATAGTAAATACCTCATCGGATACATGGACAATGATGTTTGACAGAGCCACAAACAAAGTAGGACACGGTATGGGAGTGACTTTGATGTCCCCTGATGAGAAGAGGTACCCTTTCACTACTAAGTTATATTTCGATTGCACCAATAATATGGTTGAGTATAAAGCATGTAGTATGGGAGTGCGAATAGCATACGAGATGAAAATAAAAAATTTACGAGTCCTTGGGGACTCCCTATTGGTTGTACATAAGCTCAATGGGGAATATGAGACGAGGGATGCTAAATTCATCCCTTATAATGATTATATTTGCACAATAGCTCAAACTTTTGATTCGATAATGTTTGAACACATCCCATGCCAAAGCAACCAAGTTGTAGATGTATTAGCCACTCTTTCTGCCATGTTTAATGTAGCTTACAATGAAAAAGTTCAACCTATAAGGATGGAGAAGTATAAGACACCATCCTGCTGTATGAACCTCGAGCAAGAACCTGATGGTAAACCTTGGTATCATCATAGTAACCATTACATTGCATATCGGGAGTATCCACCAAGGGCATCAGAAAATAGTAAGCGTACCATTAGGAAGCTAGCCATGACTCTACTGCGATGTGTCGATGCCTTAGAAGCCAAAAAGATTTTGGAAGAAATTCATGAAGGAGTTTGTGGGACGCATGCAAATGGACACATGATGGCGAG

mRNA sequence

ATGAAGTTCGATTTTCTAGATGAAGATATCATGACGATAGTAAATACCTCATCGGATACATGGACAATGATGTTTGACAGAGCCACAAACAAAGTAGGACACGGTATGGGAGTGACTTTGATGTCCCCTGATGAGAAGAGGTACCCTTTCACTACTAAGTTATATTTCGATTGCACCAATAATATGGTTGAGTATAAAGCATGTAGTATGGGAGTGCGAATAGCATACGAGATGAAAATAAAAAATTTACGAGTCCTTGGGGACTCCCTATTGGTTGTACATAAGCTCAATGGGGAATATGAGACGAGGGATGCTAAATTCATCCCTTATAATGATTATATTTGCACAATAGCTCAAACTTTTGATTCGATAATGTTTGAACACATCCCATGCCAAAGCAACCAAGTTGTAGATGTATTAGCCACTCTTTCTGCCATGTTTAATGTAGCTTACAATGAAAAAGTTCAACCTATAAGGATGGAGAAGTATAAGACACCATCCTGCTGTATGAACCTCGAGCAAGAACCTGATGGTAAACCTTGGTATCATCATAGTAACCATTACATTGCATATCGGGAGTATCCACCAAGGGCATCAGAAAATAGTAAGCGTACCATTAGGAAGCTAGCCATGACTCTACTGCGATGTGTCGATGCCTTAGAAGCCAAAAAGATTTTGGAAGAAATTCATGAAGGAGTTTGTGGGACGCATGCAAATGGACACATGATGGCGAG

Coding sequence (CDS)

ATGAAGTTCGATTTTCTAGATGAAGATATCATGACGATAGTAAATACCTCATCGGATACATGGACAATGATGTTTGACAGAGCCACAAACAAAGTAGGACACGGTATGGGAGTGACTTTGATGTCCCCTGATGAGAAGAGGTACCCTTTCACTACTAAGTTATATTTCGATTGCACCAATAATATGGTTGAGTATAAAGCATGTAGTATGGGAGTGCGAATAGCATACGAGATGAAAATAAAAAATTTACGAGTCCTTGGGGACTCCCTATTGGTTGTACATAAGCTCAATGGGGAATATGAGACGAGGGATGCTAAATTCATCCCTTATAATGATTATATTTGCACAATAGCTCAAACTTTTGATTCGATAATGTTTGAACACATCCCATGCCAAAGCAACCAAGTTGTAGATGTATTAGCCACTCTTTCTGCCATGTTTAATGTAGCTTACAATGAAAAAGTTCAACCTATAAGGATGGAGAAGTATAAGACACCATCCTGCTGTATGAACCTCGAGCAAGAACCTGATGGTAAACCTTGGTATCATCATAGTAACCATTACATTGCATATCGGGAGTATCCACCAAGGGCATCAGAAAATAGTAAGCGTACCATTAGGAAGCTAGCCATGACTCTACTGCGATGTGTCGATGCCTTAGAAGCCAAAAAGATTTTGGAAGAAATTCATGAAGGAGTTTGTGGGACGCATGCAAATGGACACATGATGGCGAG

Protein sequence

MKFDFLDEDIMTIVNTSSDTWTMMFDRATNKVGHGMGVTLMSPDEKRYPFTTKLYFDCTNNMVEYKACSMGVRIAYEMKIKNLRVLGDSLLVVHKLNGEYETRDAKFIPYNDYICTIAQTFDSIMFEHIPCQSNQVVDVLATLSAMFNVAYNEKVQPIRMEKYKTPSCCMNLEQEPDGKPWYHHSNHYIAYREYPPRASENSKRTIRKLAMTLLRCVDALEAKKILEEIHEGVCGTHANGHMMA

Homology

[Close]

BLAST of MELO3C012681 vs. TrEMBL
Match: A0A061DRM3_THECC (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H OS=Theobroma cacao GN=TCM_004328 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 4.3e-70
Identity = 128/265 (48.30%), Postives = 181/265 (68.30%), Query Frame = 1


Query: 1   MKFDFLDEDIMTIVNTSSD-----TWTMMFDRATNKVGHGMGVTLMSPDEKRYPFTTKLY 60
           M+F+F DED+M+I  TS +      W M FD A+N +GHG+GV L+SP+   YP   KL 
Sbjct: 75  MEFEFPDEDLMSICQTSGEESEKENWKMFFDGASNALGHGIGVVLVSPEGDHYPVIAKLN 134

Query: 61  FDCTNNMVEYKACSMGVRIAYEMKIKNLRVLGDSLLVVHKLNGEYETRDAKFIPYNDYIC 120
           F CTNN+ EY+AC MG++ A E KI  L V GDS LV+++L GE+ETRD+K + Y+ Y+ 
Sbjct: 135 FYCTNNVAEYEACVMGIQAAIERKIHILEVYGDSALVIYQLRGEWETRDSKLVRYHKYVS 194

Query: 121 TIAQTFDSIMFEHIPCQSNQVVDVLATLSAMFNVAYNEKVQPIRMEKYKTPSCCMNLEQE 180
            + + FD I F H+P + NQ+ D LATL+A+F V  N K+QPI +   + P+ C ++E+E
Sbjct: 195 KLIENFDEICFNHLPREENQMADALATLAAIFKVGTNVKIQPIMINLRECPAHCSSVEEE 254

Query: 181 PDGKPWYHHSNHYIAYREYPPRASENSKRTIRKLAM----------------TLLRCVDA 240
            DGKPWYH   HY+ +++YP ++SEN K+TIR+LAM                TLLRCVD+
Sbjct: 255 IDGKPWYHDIVHYLKFQQYPDQSSENDKKTIRRLAMNFFLDGNILYKRSRDQTLLRCVDS 314

Query: 241 LEAKKILEEIHEGVCGTHANGHMMA 245
           +EA++I++E+HEGVCG HA+GH +A
Sbjct: 315 IEARRIVKEVHEGVCGAHASGHKLA 339

[Close]

BLAST of MELO3C012681 vs. TrEMBL
Match: A0A061EFI0_THECC (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H OS=Theobroma cacao GN=TCM_010987 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 4.3e-70
Identity = 129/265 (48.68%), Postives = 179/265 (67.55%), Query Frame = 1


Query: 1   MKFDFLDEDIMTIVNTSSD-----TWTMMFDRATNKVGHGMGVTLMSPDEKRYPFTTKLY 60
           M+F+F DED+M+I  TS +      W M FD A+N +GHG+GV L+SP+   YP   KL 
Sbjct: 420 MEFEFPDEDLMSICQTSGEESEKENWKMFFDGASNALGHGIGVVLVSPEGDHYPVIAKLN 479

Query: 61  FDCTNNMVEYKACSMGVRIAYEMKIKNLRVLGDSLLVVHKLNGEYETRDAKFIPYNDYIC 120
           F CTNN+ EY+AC MG++ A E KI  L V GDS LV+++L GE+ETRD+K + Y+ Y+ 
Sbjct: 480 FYCTNNVAEYEACVMGIQAAIERKIHILEVYGDSALVIYQLRGEWETRDSKLVRYHKYVS 539

Query: 121 TIAQTFDSIMFEHIPCQSNQVVDVLATLSAMFNVAYNEKVQPIRMEKYKTPSCCMNLEQE 180
            + + FD I F H+P + NQ+ D LA L+AMF V  N K+QPI +   + P+ C ++E+E
Sbjct: 540 KLIENFDEICFNHLPREENQMADALAMLAAMFKVGTNVKIQPIMINLRECPAHCFSVEEE 599

Query: 181 PDGKPWYHHSNHYIAYREYPPRASENSKRTIRKLAM----------------TLLRCVDA 240
            DGKPWYH   HY+ +++YP ++SEN K+TIR+LAM                TLLRCVD+
Sbjct: 600 IDGKPWYHDIVHYLKFQQYPDQSSENDKKTIRRLAMNFFLDGNILYKRSRDQTLLRCVDS 659

Query: 241 LEAKKILEEIHEGVCGTHANGHMMA 245
            EA++I+EE+HEGVCG HA+GH +A
Sbjct: 660 TEARRIVEEVHEGVCGAHASGHKLA 684

[Close]

BLAST of MELO3C012681 vs. TrEMBL
Match: A0A061GK83_THECC (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, putative OS=Theobroma cacao GN=TCM_037531 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.3e-69
Identity = 128/265 (48.30%), Postives = 179/265 (67.55%), Query Frame = 1


Query: 1   MKFDFLDEDIMTIVNTSSD-----TWTMMFDRATNKVGHGMGVTLMSPDEKRYPFTTKLY 60
           M+F+FLDED+M+I  TS +      W M FD A+N +GHG+GV L+SP+   YP   KL 
Sbjct: 9   MEFEFLDEDLMSICQTSGEESEKENWKMFFDGASNALGHGIGVVLVSPEGDHYPVIAKLN 68

Query: 61  FDCTNNMVEYKACSMGVRIAYEMKIKNLRVLGDSLLVVHKLNGEYETRDAKFIPYNDYIC 120
           F CTNN+ EY+AC MG++ A E KI  L V  DS LV+++L  E+ETRD+K + Y+ Y+ 
Sbjct: 69  FYCTNNVAEYEACVMGIQAAIERKIHILEVYEDSALVIYQLRREWETRDSKLVRYHKYVS 128

Query: 121 TIAQTFDSIMFEHIPCQSNQVVDVLATLSAMFNVAYNEKVQPIRMEKYKTPSCCMNLEQE 180
            + + FD I F H+P + NQ+ D LATL+AMF V  N K+QPI +   + P+ C ++E+E
Sbjct: 129 KLVENFDEICFNHLPREENQMADALATLAAMFKVGTNVKIQPIMINLRECPAHCSSVEEE 188

Query: 181 PDGKPWYHHSNHYIAYREYPPRASENSKRTIRKLAM----------------TLLRCVDA 240
            DGKPWYH   HY+ +++YP ++SEN K+TIR+LAM                TLLRCVD+
Sbjct: 189 IDGKPWYHDIVHYLKFQQYPDQSSENDKKTIRRLAMNFFLDGNILYKRSRDQTLLRCVDS 248

Query: 241 LEAKKILEEIHEGVCGTHANGHMMA 245
            EA++I+EE+HEG+CG HA+GH +A
Sbjct: 249 TEARRIVEEVHEGICGAHASGHKLA 273

[Close]

BLAST of MELO3C012681 vs. TrEMBL
Match: A0A061FXI5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_044654 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 4.6e-64
Identity = 121/266 (45.49%), Postives = 174/266 (65.41%), Query Frame = 1


Query: 1   MKFDFLDEDIMTIVNTSSD------TWTMMFDRATNKVGHGMGVTLMSPDEKRYPFTTKL 60
           M F+F D+D+M++  T+ +       W M FD A+N +GHG+GV L+SP+   YP   KL
Sbjct: 83  MDFEFPDKDLMSVCQTNKEESKEKENWKMFFDGASNALGHGIGVVLVSPEGDHYPVIAKL 142

Query: 61  YFDCTNNMVEYKACSMGVRIAYEMKIKNLRVLGDSLLVVHKLNGEYETRDAKFIPYNDYI 120
            F CTNN+VEY+ C MG++ A E KI  L V GDS  V+++L GE+E RD+K I Y+ Y+
Sbjct: 143 NFYCTNNVVEYETCFMGLQEAIERKIHILEVYGDSGWVIYQLRGEWEARDSKLIQYHKYV 202

Query: 121 CTIAQTFDSIMFEHIPCQSNQVVDVLATLSAMFNVAYNEKVQPIRMEKYKTPSCCMNLEQ 180
             + + F+ I F H+P + NQ+ D LATL+AMF V  + K+QPI +   + P+ C ++E+
Sbjct: 203 SKLIENFNKICFTHLPREENQMADALATLAAMFKVGTDVKIQPIMITLRECPAHCSSVEE 262

Query: 181 EPDGKPWYHHSNHYIAYREYPPRASENSKRTIRKLAM----------------TLLRCVD 240
           E DGK WYH   HY+ +++YP + SEN K+ IR+LAM                 LLRCVD
Sbjct: 263 EVDGKLWYHDIVHYLKFQQYPKQNSENDKKIIRRLAMNFFLDGDILYKRSRDQVLLRCVD 322

Query: 241 ALEAKKILEEIHEGVCGTHANGHMMA 245
           + EA++I+EE+HEG+CG HA+GHM+A
Sbjct: 323 SAEARRIVEEVHEGICGAHASGHMLA 348

[Close]

BLAST of MELO3C012681 vs. TrEMBL
Match: A0A061FF52_THECC (RNA-directed DNA polymerase, putative OS=Theobroma cacao GN=TCM_034880 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 8.7e-63
Identity = 119/266 (44.74%), Postives = 167/266 (62.78%), Query Frame = 1


Query: 1    MKFDFLDEDIMTIVNTSS------DTWTMMFDRATNKVGHGMGVTLMSPDEKRYPFTTKL 60
            + FDF DED+M  ++         + W + FD A+N +GH +G  L+SP+ K YP TT+L
Sbjct: 1053 VSFDFPDEDLMAFLHIEEVSPNELNPWKVYFDGASNALGHEIGAVLISPNGKYYPATTRL 1112

Query: 61   YFDCTNNMVEYKACSMGVRIAYEMKIKNLRVLGDSLLVVHKLNGEYETRDAKFIPYNDYI 120
             F+CTNNM EY+A  MG++ A EMK+  + V GDS LV+ ++ GE+ETRD K +PY   +
Sbjct: 1113 NFNCTNNMAEYEALVMGLQAAIEMKVDAIDVYGDSALVICQIKGEWETRDPKLVPYKKLV 1172

Query: 121  CTIAQTFDSIMFEHIPCQSNQVVDVLATLSAMFNVAYNEKVQPIRMEKYKTPSCCMNLEQ 180
              +++ F  I F H+P + NQ+ D LATL+AMF +     V+P  +E  +  + C+N+EQ
Sbjct: 1173 TELSKQFKEISFNHLPREENQIADALATLAAMFKIKEAADVRPFDLEVREVSAHCLNVEQ 1232

Query: 181  EPDGKPWYHHSNHYIAYREYPPRASENSKRTIRKLAM----------------TLLRCVD 240
            E DGKPWYH    YI ++ YP   ++N KRT+R+LAM                 LLRCVD
Sbjct: 1233 EVDGKPWYHDIMQYIKHQTYPENVTDNDKRTLRRLAMGFFLSGEVLYKRSRDQVLLRCVD 1292

Query: 241  ALEAKKILEEIHEGVCGTHANGHMMA 245
              EA KI++E+HEG CG HANGHM+A
Sbjct: 1293 VAEANKIMKEVHEGTCGAHANGHMLA 1318

[Close]

BLAST of MELO3C012681 vs. TAIR10
Match: AT3G01410.1 (AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 5.0e-09
Identity = 40/132 (30.30%), Postives = 63/132 (47.73%), Query Frame = 1


Query: 18  SDTWTMMFDRAT--NKVGHGMGVTLMSPDEKRYPFTTKLYFDCTNNMVEYKACSMGVRIA 77
           +D+ T+ FD A+  N    G G  L + D     +  +   + TNN+ EY+A  +G+R A
Sbjct: 152 NDSCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSA 211

Query: 78  YEMKIKNLRVLGDSLLVVHKLNGEYETRDAKFIPYNDYICTIAQTFDSIMFEHIPCQSNQ 137
            +   KN+ VLGDS+LV  ++ G ++T   K          +  +F +   +HI  + N 
Sbjct: 212 LDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNS 271

Query: 138 VVDVLATLSAMF 148
             D  A  SA+F
Sbjct: 272 EADKQAN-SAIF 282

[Close]

BLAST of MELO3C012681 vs. NCBI nr
Match: gi|659092961|ref|XP_008447313.1| (PREDICTED: uncharacterized protein LOC103489784 [Cucumis melo])

HSP 1 Score: 510.0 bits (1312), Expect = 2.3e-141
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1


Query: 1   MKFDFLDEDIMTIVNTSSDTWTMMFDRATNKVGHGMGVTLMSPDEKRYPFTTKLYFDCTN 60
           MKFDFLDEDIMTIVNTSSDTWTMMFDRATNKVGHGMGVTLMSPDEKRYPFTTKLYFDCTN
Sbjct: 120 MKFDFLDEDIMTIVNTSSDTWTMMFDRATNKVGHGMGVTLMSPDEKRYPFTTKLYFDCTN 179

Query: 61  NMVEYKACSMGVRIAYEMKIKNLRVLGDSLLVVHKLNGEYETRDAKFIPYNDYICTIAQT 120
           NMVEYKACSMGVRIAYEMKIKNLRVLGDSLLVVHKLNGEYETRDAKFIPYNDYICTIAQT
Sbjct: 180 NMVEYKACSMGVRIAYEMKIKNLRVLGDSLLVVHKLNGEYETRDAKFIPYNDYICTIAQT 239

Query: 121 FDSIMFEHIPCQSNQVVDVLATLSAMFNVAYNEKVQPIRMEKYKTPSCCMNLEQEPDGKP 180
           FDSIMFEHIPCQSNQVVDVLATLSAMFNVAYNEKVQPIRMEKYKTPSCCMNLEQEPDGKP
Sbjct: 240 FDSIMFEHIPCQSNQVVDVLATLSAMFNVAYNEKVQPIRMEKYKTPSCCMNLEQEPDGKP 299

Query: 181 WYHHSNHYIAYREYPPRASENSKRTIRKLAMTLLRCVDALEAKKILEEIHEGVCGTHANG 240
           WYHHSNHYIAYREYPPRASENSKRTIRKLAMTLLRCVDALEAKKILEEIHEGVCGTHANG
Sbjct: 300 WYHHSNHYIAYREYPPRASENSKRTIRKLAMTLLRCVDALEAKKILEEIHEGVCGTHANG 359

Query: 241 HMMA 245
           HMMA
Sbjct: 360 HMMA 363

[Close]

BLAST of MELO3C012681 vs. NCBI nr
Match: gi|659134004|ref|XP_008466990.1| (PREDICTED: uncharacterized protein LOC103504389 [Cucumis melo])

HSP 1 Score: 336.3 bits (861), Expect = 4.6e-89
Identity = 163/212 (76.89%), Postives = 178/212 (83.96%), Query Frame = 1


Query: 49  PFTTKLYFDCTNNMVEYKACSMGVRIAYEMKIKNLRVLGDSLLVVHKLNGEYETRDAKFI 108
           P T KLYFDCTNNM EY+ACSMGVR+AYEMK+K LRVLGDSLL VH+LNGE+ETRDAK I
Sbjct: 6   PLTAKLYFDCTNNMAEYEACSMGVRMAYEMKVKQLRVLGDSLLGVHQLNGEWETRDAKLI 65

Query: 109 PYNDYICTIAQTFDSIMFEHIPCQSNQVVDVLATLSAMFNVAYNEKVQPIRMEKYKTPSC 168
           PYNDYI TIAQTFDSI FEH+PC+SNQV D LATLSAMFNVAY+E+VQPIRMEKYKTPS 
Sbjct: 66  PYNDYIRTIAQTFDSITFEHVPCESNQVADALATLSAMFNVAYSEEVQPIRMEKYKTPSY 125

Query: 169 CMNLEQEPDGKPWYHHSNHYIAYREYPPRASENSKRTIRKLA----------------MT 228
           CM+LE++PDGKPWYH   HYIAYREYP   SENSKRT+R+LA                MT
Sbjct: 126 CMSLERKPDGKPWYHDIKHYIAYREYPSGVSENSKRTVRRLAMKFFLSGEVLYKRNYDMT 185

Query: 229 LLRCVDALEAKKILEEIHEGVCGTHANGHMMA 245
           LLRCVDAL+AKK LEEIHEGVCGTHANGHMMA
Sbjct: 186 LLRCVDALKAKKSLEEIHEGVCGTHANGHMMA 217

[Close]

BLAST of MELO3C012681 vs. NCBI nr
Match: gi|590696646|ref|XP_007045222.1| (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Theobroma cacao])

HSP 1 Score: 272.7 bits (696), Expect = 6.2e-70
Identity = 129/265 (48.68%), Postives = 179/265 (67.55%), Query Frame = 1


Query: 1   MKFDFLDEDIMTIVNTSSD-----TWTMMFDRATNKVGHGMGVTLMSPDEKRYPFTTKLY 60
           M+F+F DED+M+I  TS +      W M FD A+N +GHG+GV L+SP+   YP   KL 
Sbjct: 420 MEFEFPDEDLMSICQTSGEESEKENWKMFFDGASNALGHGIGVVLVSPEGDHYPVIAKLN 479

Query: 61  FDCTNNMVEYKACSMGVRIAYEMKIKNLRVLGDSLLVVHKLNGEYETRDAKFIPYNDYIC 120
           F CTNN+ EY+AC MG++ A E KI  L V GDS LV+++L GE+ETRD+K + Y+ Y+ 
Sbjct: 480 FYCTNNVAEYEACVMGIQAAIERKIHILEVYGDSALVIYQLRGEWETRDSKLVRYHKYVS 539

Query: 121 TIAQTFDSIMFEHIPCQSNQVVDVLATLSAMFNVAYNEKVQPIRMEKYKTPSCCMNLEQE 180
            + + FD I F H+P + NQ+ D LA L+AMF V  N K+QPI +   + P+ C ++E+E
Sbjct: 540 KLIENFDEICFNHLPREENQMADALAMLAAMFKVGTNVKIQPIMINLRECPAHCFSVEEE 599

Query: 181 PDGKPWYHHSNHYIAYREYPPRASENSKRTIRKLAM----------------TLLRCVDA 240
            DGKPWYH   HY+ +++YP ++SEN K+TIR+LAM                TLLRCVD+
Sbjct: 600 IDGKPWYHDIVHYLKFQQYPDQSSENDKKTIRRLAMNFFLDGNILYKRSRDQTLLRCVDS 659

Query: 241 LEAKKILEEIHEGVCGTHANGHMMA 245
            EA++I+EE+HEGVCG HA+GH +A
Sbjct: 660 TEARRIVEEVHEGVCGAHASGHKLA 684

[Close]

BLAST of MELO3C012681 vs. NCBI nr
Match: gi|590717220|ref|XP_007050559.1| (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Theobroma cacao])

HSP 1 Score: 272.7 bits (696), Expect = 6.2e-70
Identity = 128/265 (48.30%), Postives = 181/265 (68.30%), Query Frame = 1


Query: 1   MKFDFLDEDIMTIVNTSSD-----TWTMMFDRATNKVGHGMGVTLMSPDEKRYPFTTKLY 60
           M+F+F DED+M+I  TS +      W M FD A+N +GHG+GV L+SP+   YP   KL 
Sbjct: 75  MEFEFPDEDLMSICQTSGEESEKENWKMFFDGASNALGHGIGVVLVSPEGDHYPVIAKLN 134

Query: 61  FDCTNNMVEYKACSMGVRIAYEMKIKNLRVLGDSLLVVHKLNGEYETRDAKFIPYNDYIC 120
           F CTNN+ EY+AC MG++ A E KI  L V GDS LV+++L GE+ETRD+K + Y+ Y+ 
Sbjct: 135 FYCTNNVAEYEACVMGIQAAIERKIHILEVYGDSALVIYQLRGEWETRDSKLVRYHKYVS 194

Query: 121 TIAQTFDSIMFEHIPCQSNQVVDVLATLSAMFNVAYNEKVQPIRMEKYKTPSCCMNLEQE 180
            + + FD I F H+P + NQ+ D LATL+A+F V  N K+QPI +   + P+ C ++E+E
Sbjct: 195 KLIENFDEICFNHLPREENQMADALATLAAIFKVGTNVKIQPIMINLRECPAHCSSVEEE 254

Query: 181 PDGKPWYHHSNHYIAYREYPPRASENSKRTIRKLAM----------------TLLRCVDA 240
            DGKPWYH   HY+ +++YP ++SEN K+TIR+LAM                TLLRCVD+
Sbjct: 255 IDGKPWYHDIVHYLKFQQYPDQSSENDKKTIRRLAMNFFLDGNILYKRSRDQTLLRCVDS 314

Query: 241 LEAKKILEEIHEGVCGTHANGHMMA 245
           +EA++I++E+HEGVCG HA+GH +A
Sbjct: 315 IEARRIVKEVHEGVCGAHASGHKLA 339

[Close]

BLAST of MELO3C012681 vs. NCBI nr
Match: gi|590575278|ref|XP_007012641.1| (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, putative [Theobroma cacao])

HSP 1 Score: 271.2 bits (692), Expect = 1.8e-69
Identity = 128/265 (48.30%), Postives = 179/265 (67.55%), Query Frame = 1


Query: 1   MKFDFLDEDIMTIVNTSSD-----TWTMMFDRATNKVGHGMGVTLMSPDEKRYPFTTKLY 60
           M+F+FLDED+M+I  TS +      W M FD A+N +GHG+GV L+SP+   YP   KL 
Sbjct: 9   MEFEFLDEDLMSICQTSGEESEKENWKMFFDGASNALGHGIGVVLVSPEGDHYPVIAKLN 68

Query: 61  FDCTNNMVEYKACSMGVRIAYEMKIKNLRVLGDSLLVVHKLNGEYETRDAKFIPYNDYIC 120
           F CTNN+ EY+AC MG++ A E KI  L V  DS LV+++L  E+ETRD+K + Y+ Y+ 
Sbjct: 69  FYCTNNVAEYEACVMGIQAAIERKIHILEVYEDSALVIYQLRREWETRDSKLVRYHKYVS 128

Query: 121 TIAQTFDSIMFEHIPCQSNQVVDVLATLSAMFNVAYNEKVQPIRMEKYKTPSCCMNLEQE 180
            + + FD I F H+P + NQ+ D LATL+AMF V  N K+QPI +   + P+ C ++E+E
Sbjct: 129 KLVENFDEICFNHLPREENQMADALATLAAMFKVGTNVKIQPIMINLRECPAHCSSVEEE 188

Query: 181 PDGKPWYHHSNHYIAYREYPPRASENSKRTIRKLAM----------------TLLRCVDA 240
            DGKPWYH   HY+ +++YP ++SEN K+TIR+LAM                TLLRCVD+
Sbjct: 189 IDGKPWYHDIVHYLKFQQYPDQSSENDKKTIRRLAMNFFLDGNILYKRSRDQTLLRCVDS 248

Query: 241 LEAKKILEEIHEGVCGTHANGHMMA 245
            EA++I+EE+HEG+CG HA+GH +A
Sbjct: 249 TEARRIVEEVHEGICGAHASGHKLA 273

The following BLAST results are available for this feature:

BLAST of MELO3C012681 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061DRM3_THECC	4.3e-70	48.30	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H OS=Theobroma...	[more]
A0A061EFI0_THECC	4.3e-70	48.68	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H OS=Theobroma...	[more]
A0A061GK83_THECC	1.3e-69	48.30	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, putative OS...	[more]
A0A061FXI5_THECC	4.6e-64	45.49	Uncharacterized protein OS=Theobroma cacao GN=TCM_044654 PE=4 SV=1	[more]
A0A061FF52_THECC	8.7e-63	44.74	RNA-directed DNA polymerase, putative OS=Theobroma cacao GN=TCM_034880 PE=4 SV=1	[more]

BLAST of MELO3C012681 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01410.1	5.0e-09	30.30	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

BLAST of MELO3C012681 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092961\|ref\|XP_008447313.1\|	2.3e-141	100.00	PREDICTED: uncharacterized protein LOC103489784 [Cucumis melo]	[more]
gi\|659134004\|ref\|XP_008466990.1\|	4.6e-89	76.89	PREDICTED: uncharacterized protein LOC103504389 [Cucumis melo]	[more]
gi\|590696646\|ref\|XP_007045222.1\|	6.2e-70	48.68	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Theobroma c...	[more]
gi\|590717220\|ref\|XP_007050559.1\|	6.2e-70	48.30	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Theobroma c...	[more]
gi\|590575278\|ref\|XP_007012641.1\|	1.8e-69	48.30	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H, putative [T...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002156	RNaseH_domain
IPR012337	RNaseH-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0004523	RNA-DNA hybrid ribonuclease activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
biological_process	GO:0051252	regulation of RNA metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012681T1	MELO3C012681T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PROFILE	PS50879	RNASE_H	coord: 17..146 score: 9
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 34..145 score: 5.
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 19..141 score: 3.04
None	No IPR available	PANTHER	PTHR33033	FAMILY NOT NAMED	coord: 17..141 score: 1.6
None	No IPR available	PANTHER	PTHR33033:SF10	SUBFAMILY NOT NAMED	coord: 17..141 score: 1.6
None	No IPR available	PFAM	PF13456	RVT_3	coord: 31..143 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012681	Cucumber (Chinese Long) v3	cucmeB551
MELO3C012681	Cucumber (Gy14) v1	cgymeB405
MELO3C012681	Wild cucumber (PI 183967)	cpimeB541
MELO3C012681	Cucumber (Chinese Long) v2	cumeB533
MELO3C012681	Cucumber (Gy14) v2	cgybmeB471