MELO3C012641 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C012641
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase subunit beta'
Locationchr1 : 20631015 .. 20631182 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGCAATGACGTTGACGACGTGGATGAGGAGGACTCCACGTATGTGATGACCACCGCTTCAGAAGACATTCACTACATTAAGACGACAAATGAGTGGTCTCAGTGGCGCGACGAACTAGCCGAATCGATGTTCACTGATTGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTGCAATGACGTTGACGACGTGGATGAGGAGGACTCCACGTATGTGATGACCACCGCTTCAGAAGACATTCACTACATTAAGACGACAAATGAGTGGTCTCAGTGGCGCGACGAACTAGCCGAATCGATGTTCACTGATTGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCAATGACGTTGACGACGTGGATGAGGAGGACTCCACGTATGTGATGACCACCGCTTCAGAAGACATTCACTACATTAAGACGACAAATGAGTGGTCTCAGTGGCGCGACGAACTAGCCGAATCGATGTTCACTGATTGGCAGTTGCGTAACGCTTAG

Protein sequence

MTYCNDVDDVDEEDSTYVMTTASEDIHYIKTTNEWSQWRDELAESMFTDWQLRNA*
Homology
[Close]
BLAST of MELO3C012641 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.4e-18
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 1 

Query: 1   MTYCNDVDDVDEEDSTYVMTTASEDIHYIKTTNEWSQWRDELAESMFTDWQLR 54
           MTYCNDV+D DE DSTY  TTASEDI YI+TTNEWSQWRD+LA SMFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

[Close]
BLAST of MELO3C012641 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-07
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1 

Query: 1   MTYCNDVDDVDEEDSTYVMTTASEDIHYIKTTNEWSQWRDELAESMFT 49
           MT  +  D++DE DST+  TTA++DIHYI+T+NEWSQWRD LAE + T
Sbjct: 311 MTNFDIEDNIDEVDSTHA-TTAADDIHYIETSNEWSQWRDNLAEEIMT 357

[Close]
BLAST of MELO3C012641 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 4.8e-18
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 1 

Query: 1   MTYCNDVDDVDEEDSTYVMTTASEDIHYIKTTNEWSQWRDELAESMFTDWQLRNA 56
           MTYC+DVDDVDE D  Y  TT  E+IHYI+ TNEWSQWRD+LAESMFTDWQLRNA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

[Close]
BLAST of MELO3C012641 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 97.8 bits (242), Expect = 6.3e-18
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 1 

Query: 1   MTYCNDVDDVDEEDSTYVMTTASEDIHYIKTTNEWSQWRDELAESMFTDWQLR 54
           MTYCNDV+D DE DSTY  TTASEDI YI+TTNEWSQWRD+LA SMFTDWQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

[Close]
BLAST of MELO3C012641 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-12
Identity = 36/54 (66.67%), Postives = 46/54 (85.19%), Query Frame = 1 

Query: 1   MTYCNDVDDVDEEDSTYVMTTASEDIHYIKTTNEWSQWRDELAESMFTDWQLRN 55
           MT  +  D++DE DST+  TTA++DIHYI+T+NEWSQWRD+LAE MFTDW+LRN
Sbjct: 150 MTNFDIEDNIDEVDSTHA-TTAADDIHYIETSNEWSQWRDDLAEEMFTDWELRN 202

[Close]
BLAST of MELO3C012641 vs. NCBI nr
Match: gi|659083293|ref|XP_008442271.1| (PREDICTED: uncharacterized protein LOC103486178 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-11
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 

Query: 1   MTYCNDVDDVDEEDSTYVMTTASEDIHYIKTTNEWSQWRDELAESMFTDWQLRN 55
           MT  N  DD+DE DST+  TT  +DIHYI+T+NEW+ WRDEL E MF+DW+LRN
Sbjct: 105 MTNFNIEDDIDEVDSTHA-TTVGDDIHYIETSNEWTPWRDELVEEMFSDWELRN 157

[Close]
BLAST of MELO3C012641 vs. NCBI nr
Match: gi|659112451|ref|XP_008456228.1| (PREDICTED: uncharacterized protein LOC103496233 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 2.6e-11
Identity = 32/54 (59.26%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 1   MTYCNDVDDVDEEDSTYVMTTASEDIHYIKTTNEWSQWRDELAESMFTDWQLRN 55
           MT  + VDD+DE DST+  T+A++DIHYI+T+NEW++WRD+LA+ MF++W+LRN
Sbjct: 152 MTTFDIVDDIDEVDSTHA-TSAADDIHYIETSNEWTRWRDDLAKEMFSEWELRN 204

The following BLAST results are available for this feature:
BLAST of MELO3C012641 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB2_CUCME4.4e-1881.13Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME1.6e-0760.42Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C012641 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099182|ref|XP_008450472.1|4.8e-1878.18PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|6.3e-1881.13retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659121362|ref|XP_008460622.1|1.0e-1266.67PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo][more]
gi|659083293|ref|XP_008442271.1|1.1e-1162.96PREDICTED: uncharacterized protein LOC103486178 [Cucumis melo][more]
gi|659112451|ref|XP_008456228.1|2.6e-1159.26PREDICTED: uncharacterized protein LOC103496233 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012641T1MELO3C012641T1mRNA