MELO3C012600 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012600
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative Ty1-copia-like retrotransposon
Location	chr1 : 19841930 .. 19842448 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAGGAACTTTGTCCTCCCAAGTTCATAACCACATCAAATGAATCTGGTGCTTCAGTAACAGAAGAAAGAGACAACGCACTACAGAGAGCTTCGTCAAGTTCTTCAACACTTGCAGTCGTGAATCCTGATTTTGAAAAATGGGTAACTACTGATTTAATTTTGCTTGGCTGGTTGTATAACTCGATGATGCCTGAAGTAGCCATTCAATTGATGGGATTCACAAATGCCAAAGACCTATGGGAAGCTATGCATGATCTTTTTGGTGTTCAATCCAGAGCTGAGGAGGATTTCCTTCGTCAGACGTTCCAAACTATCAGAAAAGGTAATTCCAAAATGGAAGACTATCTAAGAATTATGAAAACTAACGCTGATAAGCTTAGCCAAGCCGGAAGTCCTGTTTCGAGACGTGCCCTTATCTCTCAGGTTCTACTAAGATTGGATCAAGTCTACAATCTCGTCATAACTATTATCCAAGGGAAGCCAGAGATTTCGTGGATTGATATGCAGTCATAA

mRNA sequence

ATGGGTGAGGAACTTTGTCCTCCCAAGTTCATAACCACATCAAATGAATCTGGTGCTTCAGTAACAGAAGAAAGAGACAACGCACTACAGAGAGCTTCGTCAAGTTCTTCAACACTTGCAGTCGTGAATCCTGATTTTGAAAAATGGGTAACTACTGATTTAATTTTGCTTGGCTGGTTGTATAACTCGATGATGCCTGAAGTAGCCATTCAATTGATGGGATTCACAAATGCCAAAGACCTATGGGAAGCTATGCATGATCTTTTTGGTGTTCAATCCAGAGCTGAGGAGGATTTCCTTCGTCAGACGTTCCAAACTATCAGAAAAGGTAATTCCAAAATGGAAGACTATCTAAGAATTATGAAAACTAACGCTGATAAGCTTAGCCAAGCCGGAAGTCCTGTTTCGAGACGTGCCCTTATCTCTCAGGTTCTACTAAGATTGGATCAAGTCTACAATCTCGTCATAACTATTATCCAAGGGAAGCCAGAGATTTCGTGGATTGATATGCAGTCATAA

Coding sequence (CDS)

ATGGGTGAGGAACTTTGTCCTCCCAAGTTCATAACCACATCAAATGAATCTGGTGCTTCAGTAACAGAAGAAAGAGACAACGCACTACAGAGAGCTTCGTCAAGTTCTTCAACACTTGCAGTCGTGAATCCTGATTTTGAAAAATGGGTAACTACTGATTTAATTTTGCTTGGCTGGTTGTATAACTCGATGATGCCTGAAGTAGCCATTCAATTGATGGGATTCACAAATGCCAAAGACCTATGGGAAGCTATGCATGATCTTTTTGGTGTTCAATCCAGAGCTGAGGAGGATTTCCTTCGTCAGACGTTCCAAACTATCAGAAAAGGTAATTCCAAAATGGAAGACTATCTAAGAATTATGAAAACTAACGCTGATAAGCTTAGCCAAGCCGGAAGTCCTGTTTCGAGACGTGCCCTTATCTCTCAGGTTCTACTAAGATTGGATCAAGTCTACAATCTCGTCATAACTATTATCCAAGGGAAGCCAGAGATTTCGTGGATTGATATGCAGTCATAA

Protein sequence

MGEELCPPKFITTSNESGASVTEERDNALQRASSSSSTLAVVNPDFEKWVTTDLILLGWLYNSMMPEVAIQLMGFTNAKDLWEAMHDLFGVQSRAEEDFLRQTFQTIRKGNSKMEDYLRIMKTNADKLSQAGSPVSRRALISQVLLRLDQVYNLVITIIQGKPEISWIDMQS*

Homology

[Close]

BLAST of MELO3C012600 vs. TrEMBL
Match: A0A0A0LXB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G496800 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.6e-45
Identity = 91/113 (80.53%), Postives = 100/113 (88.50%), Query Frame = 1


Query: 60  LYNSMMPEVAIQLMGFTNAKDLWEAMHDLFGVQSRAEEDFLRQTFQTIRKGNSKMEDYLR 119
           LYNS+ PEV +QL+GFTNAKD+WEA HD FGV+SRAEEDFLRQTFQT RKGNS MEDYLR
Sbjct: 22  LYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLR 81

Query: 120 IMKTNADKLSQAGSPVSRRALISQVLLRLDQVYNLVITIIQGKPEISWIDMQS 173
           IMKTNAD L QA SP+ RRALISQVLL LD+VYN VI +IQGKPEISW+DMQS
Sbjct: 82  IMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQS 134

[Close]

BLAST of MELO3C012600 vs. TrEMBL
Match: A0A0A0K3F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G091720 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.4e-29
Identity = 68/96 (70.83%), Postives = 76/96 (79.17%), Query Frame = 1


Query: 64  MMPEVAIQLMGFTNAKDLWEAMHDLFGVQSRAEEDFLRQTFQTIRKGNSKMEDYLRIMKT 123
           M PEVA+QLMGF  AKDLWEA+ DLFGVQ RAEEDFLR TFQT +KGNSKMEDYL  MKT
Sbjct: 1   MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60

Query: 124 NADKLSQAGSPVSRRALISQVLLRLDQVYNLVITII 160
           N D L QAGS V   +LISQV+L LD++YN V  +I
Sbjct: 61  NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 96

[Close]

BLAST of MELO3C012600 vs. TrEMBL
Match: A0A0A0L1H3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G329050 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.5e-24
Identity = 67/104 (64.42%), Postives = 76/104 (73.08%), Query Frame = 1


Query: 64  MMPEVAIQLMGFTNAKDLWEAM-HDLFGVQSRAEEDFLRQTFQTIRKGNSKMEDYLRIMK 123
           M  EVAIQLM F  AKDLWEA+  D  GVQSR EE+FL+QT QT RK NSKMEDYL I K
Sbjct: 1   MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60

Query: 124 TNADKLSQAGSPVSRRALISQVLLRLDQVYNLVITIIQGKPEIS 167
            NAD LSQ  S V  + L S VLL L++VYN+VI ++QGKP IS
Sbjct: 61  MNADNLSQTDSLVPPQVL-SYVLLELNEVYNMVIAVVQGKPNIS 103

[Close]

BLAST of MELO3C012600 vs. TrEMBL
Match: A0A0A0LFV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G850540 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.3e-22
Identity = 54/80 (67.50%), Postives = 61/80 (76.25%), Query Frame = 1


Query: 64  MMPEVAIQLMGFTNAKDLWEAMHDLFGVQSRAEEDFLRQTFQTIRKGNSKMEDYLRIMKT 123
           M+P+V +Q MGF   +DLW+ + DLFGVQSR EEDFL QTF T RK N  MEDYLRIMKT
Sbjct: 1   MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMKT 60

Query: 124 NADKLSQAGSPVSRRALISQ 144
           N D LSQAGSPV  R+ ISQ
Sbjct: 61  NTDNLSQAGSPVPPRSSISQ 80

[Close]

BLAST of MELO3C012600 vs. TrEMBL
Match: A0A151RKJ3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_035512 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.0e-22
Identity = 55/130 (42.31%), Postives = 76/130 (58.46%), Query Frame = 1


Query: 43  NPDFEKWVTTDLILLGWLYNSMMPEVAIQLMGFTNAKDLWEAMHDLFGVQSRAEEDFLRQ 102
           NP F  W +TD +LLGWL NSM  EVA QL+    ++ +WE    L G  +R+   FL+ 
Sbjct: 69  NPAFADWTSTDQLLLGWLINSMTQEVATQLLHCETSQQIWEDAQSLAGAHTRSRITFLKT 128

Query: 103 TFQTIRKGNSKMEDYLRIMKTNADKLSQAGSPVSRRALISQVLLRLDQVYNLVITIIQGK 162
            F   RKG  KME+Y   MK  AD L+ AGS VS   L++Q L  LD  YN ++  +  K
Sbjct: 129 EFHRTRKGGLKMEEYFTKMKEIADDLALAGSSVSTMDLVTQTLAGLDNEYNPIVVQLSDK 188

Query: 163 PEISWIDMQS 173
             ++W++MQ+
Sbjct: 189 EHLTWVEMQA 198

[Close]

BLAST of MELO3C012600 vs. NCBI nr
Match: gi|700210588|gb|KGN65684.1| (hypothetical protein Csa_1G496800 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 1.1e-44
Identity = 91/113 (80.53%), Postives = 100/113 (88.50%), Query Frame = 1


Query: 60  LYNSMMPEVAIQLMGFTNAKDLWEAMHDLFGVQSRAEEDFLRQTFQTIRKGNSKMEDYLR 119
           LYNS+ PEV +QL+GFTNAKD+WEA HD FGV+SRAEEDFLRQTFQT RKGNS MEDYLR
Sbjct: 22  LYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLR 81

Query: 120 IMKTNADKLSQAGSPVSRRALISQVLLRLDQVYNLVITIIQGKPEISWIDMQS 173
           IMKTNAD L QA SP+ RRALISQVLL LD+VYN VI +IQGKPEISW+DMQS
Sbjct: 82  IMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQS 134

[Close]

BLAST of MELO3C012600 vs. NCBI nr
Match: gi|700188770|gb|KGN44003.1| (hypothetical protein Csa_7G091720 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 4.9e-29
Identity = 68/96 (70.83%), Postives = 76/96 (79.17%), Query Frame = 1


Query: 64  MMPEVAIQLMGFTNAKDLWEAMHDLFGVQSRAEEDFLRQTFQTIRKGNSKMEDYLRIMKT 123
           M PEVA+QLMGF  AKDLWEA+ DLFGVQ RAEEDFLR TFQT +KGNSKMEDYL  MKT
Sbjct: 1   MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60

Query: 124 NADKLSQAGSPVSRRALISQVLLRLDQVYNLVITII 160
           N D L QAGS V   +LISQV+L LD++YN V  +I
Sbjct: 61  NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 96

[Close]

BLAST of MELO3C012600 vs. NCBI nr
Match: gi|700199274|gb|KGN54432.1| (hypothetical protein Csa_4G329050 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 3.6e-24
Identity = 67/104 (64.42%), Postives = 76/104 (73.08%), Query Frame = 1


Query: 64  MMPEVAIQLMGFTNAKDLWEAM-HDLFGVQSRAEEDFLRQTFQTIRKGNSKMEDYLRIMK 123
           M  EVAIQLM F  AKDLWEA+  D  GVQSR EE+FL+QT QT RK NSKMEDYL I K
Sbjct: 1   MTSEVAIQLMRFIGAKDLWEAITQDFVGVQSRVEENFLQQTSQTTRKDNSKMEDYLHITK 60

Query: 124 TNADKLSQAGSPVSRRALISQVLLRLDQVYNLVITIIQGKPEIS 167
            NAD LSQ  S V  + L S VLL L++VYN+VI ++QGKP IS
Sbjct: 61  MNADNLSQTDSLVPPQVL-SYVLLELNEVYNMVIAVVQGKPNIS 103

[Close]

BLAST of MELO3C012600 vs. NCBI nr
Match: gi|828334685|ref|XP_012575223.1| (PREDICTED: uncharacterized protein LOC101501674 [Cicer arietinum])

HSP 1 Score: 112.5 bits (280), Expect = 7.6e-22
Identity = 58/143 (40.56%), Postives = 82/143 (57.34%), Query Frame = 1


Query: 30  QRASSSSSTLAVVNPDFEKWVTTDLILLGWLYNSMMPEVAIQLMGFTNAKDLWEAMHDLF 89
           ++ ++S+ +    NP FE W   D  LLGWL NSM  E+A QL+    +K LW+    L 
Sbjct: 54  EKFTASTDSSKNPNPAFEDWQAHDSQLLGWLMNSMTTEMATQLLHCETSKQLWDEAQSLV 113

Query: 90  GVQSRAEEDFLRQTFQTIRKGNSKMEDYLRIMKTNADKLSQAGSPVSRRALISQVLLRLD 149
           G  +R+    L+  F  IRKG  KME+YL  MK  ADKL  AGSP+S   LI Q L  LD
Sbjct: 114 GAHTRSRVTDLKSEFHNIRKGEMKMEEYLVKMKNLADKLKLAGSPISNSDLIIQTLNGLD 173

Query: 150 QVYNLVITIIQGKPEISWIDMQS 173
             YN ++  +  +  ++W+D+Q+
Sbjct: 174 SEYNPMVVKLSDQTSLTWVDLQA 196

[Close]

BLAST of MELO3C012600 vs. NCBI nr
Match: gi|700204716|gb|KGN59849.1| (hypothetical protein Csa_3G850540 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 7.6e-22
Identity = 54/80 (67.50%), Postives = 61/80 (76.25%), Query Frame = 1


Query: 64  MMPEVAIQLMGFTNAKDLWEAMHDLFGVQSRAEEDFLRQTFQTIRKGNSKMEDYLRIMKT 123
           M+P+V +Q MGF   +DLW+ + DLFGVQSR EEDFL QTF T RK N  MEDYLRIMKT
Sbjct: 1   MVPDVTLQFMGFNTTRDLWKVIQDLFGVQSRVEEDFLHQTFYTTRKDNYTMEDYLRIMKT 60

Query: 124 NADKLSQAGSPVSRRALISQ 144
           N D LSQAGSPV  R+ ISQ
Sbjct: 61  NTDNLSQAGSPVPPRSSISQ 80

The following BLAST results are available for this feature:

BLAST of MELO3C012600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXB7_CUCSA	7.6e-45	80.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G496800 PE=4 SV=1	[more]
A0A0A0K3F9_CUCSA	3.4e-29	70.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G091720 PE=4 SV=1	[more]
A0A0A0L1H3_CUCSA	2.5e-24	64.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G329050 PE=4 SV=1	[more]
A0A0A0LFV1_CUCSA	5.3e-22	67.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G850540 PE=4 SV=1	[more]
A0A151RKJ3_CAJCA	9.0e-22	42.31	Uncharacterized protein OS=Cajanus cajan GN=KK1_035512 PE=4 SV=1	[more]

BLAST of MELO3C012600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210588\|gb\|KGN65684.1\|	1.1e-44	80.53	hypothetical protein Csa_1G496800 [Cucumis sativus]	[more]
gi\|700188770\|gb\|KGN44003.1\|	4.9e-29	70.83	hypothetical protein Csa_7G091720 [Cucumis sativus]	[more]
gi\|700199274\|gb\|KGN54432.1\|	3.6e-24	64.42	hypothetical protein Csa_4G329050 [Cucumis sativus]	[more]
gi\|828334685\|ref\|XP_012575223.1\|	7.6e-22	40.56	PREDICTED: uncharacterized protein LOC101501674 [Cicer arietinum]	[more]
gi\|700204716\|gb\|KGN59849.1\|	7.6e-22	67.50	hypothetical protein Csa_3G850540 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012600T1	MELO3C012600T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 2..10 score: 4.2E-18coord: 43..166 score: 4.2
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 2..10 score: 4.2E-18coord: 43..166 score: 4.2
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 49..161 score: 9.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012600	Silver-seed gourd	carmeB0344
MELO3C012600	Silver-seed gourd	carmeB0394
MELO3C012600	Silver-seed gourd	carmeB0537
MELO3C012600	Cucumber (Chinese Long) v3	cucmeB467
MELO3C012600	Cucumber (Chinese Long) v3	cucmeB551
MELO3C012600	Watermelon (97103) v2	mewmbB186
MELO3C012600	Watermelon (97103) v2	mewmbB227
MELO3C012600	Wax gourd	mewgoB214
MELO3C012600	Wax gourd	mewgoB233
MELO3C012600	Melon (DHL92) v3.5.1	memeB040
MELO3C012600	Cucumber (Gy14) v1	cgymeB182
MELO3C012600	Cucumber (Gy14) v1	cgymeB405
MELO3C012600	Cucurbita maxima (Rimu)	cmameB101
MELO3C012600	Cucurbita maxima (Rimu)	cmameB464
MELO3C012600	Cucurbita maxima (Rimu)	cmameB515
MELO3C012600	Cucurbita moschata (Rifu)	cmomeB092
MELO3C012600	Cucurbita moschata (Rifu)	cmomeB455
MELO3C012600	Cucurbita moschata (Rifu)	cmomeB507
MELO3C012600	Wild cucumber (PI 183967)	cpimeB456
MELO3C012600	Wild cucumber (PI 183967)	cpimeB541
MELO3C012600	Cucumber (Chinese Long) v2	cumeB460
MELO3C012600	Cucumber (Chinese Long) v2	cumeB533
MELO3C012600	Watermelon (Charleston Gray)	mewcgB179
MELO3C012600	Watermelon (Charleston Gray)	mewcgB203
MELO3C012600	Watermelon (97103) v1	mewmB203
MELO3C012600	Watermelon (97103) v1	mewmB249
MELO3C012600	Cucurbita pepo (Zucchini)	cpemeB226
MELO3C012600	Cucurbita pepo (Zucchini)	cpemeB271
MELO3C012600	Cucurbita pepo (Zucchini)	cpemeB611
MELO3C012600	Bottle gourd (USVL1VR-Ls)	lsimeB063
MELO3C012600	Bottle gourd (USVL1VR-Ls)	lsimeB091
MELO3C012600	Cucumber (Gy14) v2	cgybmeB400
MELO3C012600	Cucumber (Gy14) v2	cgybmeB471