MELO3C012587 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012587
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon gag protein, putative
Location	chr1 : 19551683 .. 19552150 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGTTGATGAAAGAACGATTTCTACTGCCAAACTATGAGCAAACATTGTATAATCAGTATCAAAATCTTAGACAATGGGTAAAAACAGTGACTGATTACATTGAAGAATCCCACCGGTTGGGTGCAAGAACAAACTCGATGAAGAGTGAGCAACGTTTAATATCAAGATTTGTGGGAGCCCTACACATGGATATCAAGGAAAAGGTAAGACTTCAACCCTTTAGTTGGCTTTCTGAAGCAAGTTCATTTGCTGAAACAGTGGAAGAAATGAATGAAATATGATCCACAAAAGCAACAAGAAAAGGGACGTGGGAAACTTCCTTGAACAAGGCATATGCACCGAATACTACTACAAACCAGCCACCGGCAGCAAAAGAAAAGGATCAAAAGAAAGCTGAAGAAAGAAGTGAAAAGAAAGAAGATCTTGATCCCAAAAAGAAGGCTCGAAACCCATACAAGTGA

mRNA sequence

ATGAAGAAGTTGATGAAAGAACGATTTCTACTGCCAAACTATGAGCAAACATTGTATAATCAGTATCAAAATCTTAGACAATGGGTAAAAACAGTGACTGATTACATTGAAGAATCCCACCGGTTGGGTGCAAGAACAAACTCGATGAAGAGTGAGCAACGTTTAATATCAAGATTTGTGGGAGCCCTACACATGGATATCAAGGAAAAGGCATATGCACCGAATACTACTACAAACCAGCCACCGGCAGCAAAAGAAAAGGATCAAAAGAAAGCTGAAGAAAGAAGTGAAAAGAAAGAAGATCTTGATCCCAAAAAGAAGGCTCGAAACCCATACAAGTGA

Coding sequence (CDS)

ATGAAGAAGTTGATGAAAGAACGATTTCTACTGCCAAACTATGAGCAAACATTGTATAATCAGTATCAAAATCTTAGACAATGGGTAAAAACAGTGACTGATTACATTGAAGAATCCCACCGGTTGGGTGCAAGAACAAACTCGATGAAGAGTGAGCAACGTTTAATATCAAGATTTGTGGGAGCCCTACACATGGATATCAAGGAAAAGGCATATGCACCGAATACTACTACAAACCAGCCACCGGCAGCAAAAGAAAAGGATCAAAAGAAAGCTGAAGAAAGAAGTGAAAAGAAAGAAGATCTTGATCCCAAAAAGAAGGCTCGAAACCCATACAAGTGA

Protein sequence

MKKLMKERFLLPNYEQTLYNQYQNLRQWVKTVTDYIEESHRLGARTNSMKSEQRLISRFVGALHMDIKEKAYAPNTTTNQPPAAKEKDQKKAEERSEKKEDLDPKKKARNPYK*

Homology

[Close]

BLAST of MELO3C012587 vs. TrEMBL
Match: R0FT77_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10019435mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-08
Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 1


Query: 1   MKKLMKERFLLPNYEQTLYNQYQNLRQWVKTVTDYIEESHRLGARTNSMKSEQRLISRFV 60
           +KK M++ FL  NYE+TLYN+ QNLRQ  +TV DY  +   + ART  +++E +L+SRF+
Sbjct: 309 LKKHMRKGFLPYNYERTLYNKLQNLRQGSRTVEDYATDFFEMVARTTLLEAEDQLVSRFI 368

Query: 61  GALHMDIK 69
           G L   ++
Sbjct: 369 GGLRTQLQ 376

[Close]

BLAST of MELO3C012587 vs. TrEMBL
Match: A5AYY0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039343 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.4e-07
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1


Query: 1   MKKLMKERFLLPNYEQTLYNQYQNLRQWVKTVTDYIEESHRLGARTNSMKSEQRLISRFV 60
           +K+L++ RFL  +YEQ LY QYQN R+   T+  Y EE +RL AR N  ++E RLI+ ++
Sbjct: 147 IKRLLQRRFLPSDYEQFLYQQYQNCRRANWTMNKYTEEFYRLNARVNLFETEDRLIACYI 206

Query: 61  GAL 64
           G L
Sbjct: 207 GGL 209

[Close]

BLAST of MELO3C012587 vs. TrEMBL
Match: A0A0D3CNK6_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.1e-07
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 1   MKKLMKERFLLPNYEQTLYNQYQNLRQWVKTVTDYIEESHRLGARTNSMKSEQRLISRFV 60
           +KK M+  FL  NYE+TLYN+ Q LRQ  ++V +Y  +   + ART   ++E++L+SRF+
Sbjct: 182 LKKHMRRAFLPYNYERTLYNKLQTLRQGSRSVDEYATDFFLMVARTILAETEEQLVSRFI 241

Query: 61  GALHMDIKEKAYAPNTTT 79
           G L   I+      N TT
Sbjct: 242 GGLRFQIQTALQQFNPTT 259

[Close]

BLAST of MELO3C012587 vs. TrEMBL
Match: A0A0D3CXK5_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 37/109 (33.94%), Postives = 56/109 (51.38%), Query Frame = 1


Query: 1   MKKLMKERFLLPNYEQTLYNQYQNLRQWVKTVTDYIEESHRLGARTNSMKSEQRLISRFV 60
           + K M+  FL  NYE+TLYN+ QNLRQ   TV +Y  E   + AR  S ++E++LISRF+
Sbjct: 192 LTKHMRRAFLPFNYERTLYNKLQNLRQGTHTVDEYATEFFYMTARKTSGETEKQLISRFI 251

Query: 61  GALHMDIKEKAYAPNTTTNQPPAAKEKDQKKAEERSEKKEDLDPKKKAR 110
           G L   ++      N     P +  E  Q+     S+ +   +   + R
Sbjct: 252 GGLRGQLQVALAQFN-----PTSVSEAHQRAISMESQLRPSWNSNSRTR 295

[Close]

BLAST of MELO3C012587 vs. TrEMBL
Match: A0A0D2ZVL1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-06
Identity = 29/68 (42.65%), Postives = 46/68 (67.65%), Query Frame = 1


Query: 1   MKKLMKERFLLPNYEQTLYNQYQNLRQWVKTVTDYIEESHRLGARTNSMKSEQRLISRFV 60
           ++K++++ FL  N+++T+YN+ QNLRQ  ++V DY EE   L  RT    SE +L+SRF+
Sbjct: 172 LEKVLRKAFLPYNFDRTMYNRLQNLRQGSRSVDDYAEEFTLLLTRTEVFDSEIQLVSRFI 231

Query: 61  GALHMDIK 69
           G L   I+
Sbjct: 232 GGLRTQIQ 239

[Close]

BLAST of MELO3C012587 vs. NCBI nr
Match: gi|778708497|ref|XP_011656215.1| (PREDICTED: uncharacterized protein LOC105435674 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 1


Query: 1   MKKLMKERFLLPNYEQTLYNQYQNLRQWVKTVTDYIEESHRLGARTNSMKSEQRLISRFV 60
           MKKL+K RFL PNYEQTLYNQYQN RQ  + V +YIEE HRL ARTN  ++EQ  I+RF+
Sbjct: 94  MKKLLKTRFLPPNYEQTLYNQYQNCRQGSRIVAEYIEEFHRLSARTNLSENEQHQIARFI 153

Query: 61  GALHMDIKEK 71
           G L  DIKEK
Sbjct: 154 GGLRFDIKEK 163

[Close]

BLAST of MELO3C012587 vs. NCBI nr
Match: gi|778674458|ref|XP_011650218.1| (PREDICTED: uncharacterized protein LOC105434767 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 6.8e-11
Identity = 40/112 (35.71%), Postives = 67/112 (59.82%), Query Frame = 1


Query: 1   MKKLMKERFLLPNYEQTLYNQYQNLRQWVKTVTDYIEESHRLGARTNSMKSEQRLISRFV 60
           M +LMK+RFL  NY+Q LYNQYQ   Q  +++ DY EE +RLGAR N +++E + ISRF+
Sbjct: 140 MLRLMKKRFLPINYQQLLYNQYQQCHQGSRSIMDYTEEFYRLGARNNLLETEHQQISRFI 199

Query: 61  GALHMDIKEKAYAPNTT-----TNQPPAAKEKDQKKAEERSEKKEDLDPKKK 108
             L  +IK+  +    T      +     ++ ++ K  + S++K + D +++
Sbjct: 200 HGLRDEIKDIVHLHPLTFLSDAISLASKIEDSEEIKKTKNSQRKNNWDKQQR 251

[Close]

BLAST of MELO3C012587 vs. NCBI nr
Match: gi|985464868|ref|XP_015389179.1| (PREDICTED: uncharacterized protein LOC107178453 [Citrus sinensis])

HSP 1 Score: 71.6 bits (174), Expect = 9.8e-10
Identity = 39/109 (35.78%), Postives = 65/109 (59.63%), Query Frame = 1


Query: 1   MKKLMKERFLLPNYEQTLYNQYQNLRQWVKTVTDYIEESHRLGARTNSMKSEQRLISRFV 60
           M+KLM E FL P+YEQTL+++YQ+ RQ  +T+ +Y+ E H+L AR +  ++E + ISRF+
Sbjct: 179 MRKLMIEHFLPPDYEQTLFSRYQHCRQANRTIHEYVIEFHKLVARVDVRETENQKISRFI 238

Query: 61  GALHMDIKEKAYAP---NTTTNQPPAAKEKDQKKAEERSEKKEDLDPKK 107
             L  +I+++       N  T+     +E+  K  E   E++ +  P K
Sbjct: 239 DGLRTNIQDECQQSKPVNLATHDDDIEEEEYPKDDEYEKEEESEGSPIK 287

[Close]

BLAST of MELO3C012587 vs. NCBI nr
Match: gi|672189307|ref|XP_008813808.1| (PREDICTED: uncharacterized protein LOC103724356 [Phoenix dactylifera])

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 1


Query: 1   MKKLMKERFLLPNYEQTLYNQYQNLRQWVKTVTDYIEESHRLGARTNSMKSEQRLISRFV 60
           MK+ +   FL P+YEQTLY+QYQN RQ  +TVT+Y +E  RL A  N  K+E + ++R++
Sbjct: 105 MKQHLWGHFLPPDYEQTLYHQYQNCRQGSRTVTEYTDEFKRLNAHNNLSKTENQQVTRYI 164

Query: 61  GALHMDIKEK 71
           G L   I+++
Sbjct: 165 GGLKPAIRDQ 174

[Close]

BLAST of MELO3C012587 vs. NCBI nr
Match: gi|565470652|ref|XP_006293129.1| (hypothetical protein CARUB_v10019435mg [Capsella rubella])

HSP 1 Score: 65.9 bits (159), Expect = 5.4e-08
Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 1


Query: 1   MKKLMKERFLLPNYEQTLYNQYQNLRQWVKTVTDYIEESHRLGARTNSMKSEQRLISRFV 60
           +KK M++ FL  NYE+TLYN+ QNLRQ  +TV DY  +   + ART  +++E +L+SRF+
Sbjct: 309 LKKHMRKGFLPYNYERTLYNKLQNLRQGSRTVEDYATDFFEMVARTTLLEAEDQLVSRFI 368

Query: 61  GALHMDIK 69
           G L   ++
Sbjct: 369 GGLRTQLQ 376

The following BLAST results are available for this feature:

BLAST of MELO3C012587 vs. TrEMBL


Match Name	E-value	Identity	Description
R0FT77_9BRAS	3.7e-08	45.59	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10019435mg PE=4 SV=1	[more]
A5AYY0_VITVI	5.4e-07	47.62	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039343 PE=4 SV=1	[more]
A0A0D3CNK6_BRAOL	7.1e-07	41.03	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A0D3CXK5_BRAOL	1.2e-06	33.94	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A0D2ZVL1_BRAOL	1.6e-06	42.65	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of MELO3C012587 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708497\|ref\|XP_011656215.1\|	1.7e-17	67.14	PREDICTED: uncharacterized protein LOC105435674 [Cucumis sativus]	[more]
gi\|778674458\|ref\|XP_011650218.1\|	6.8e-11	35.71	PREDICTED: uncharacterized protein LOC105434767 [Cucumis sativus]	[more]
gi\|985464868\|ref\|XP_015389179.1\|	9.8e-10	35.78	PREDICTED: uncharacterized protein LOC107178453 [Citrus sinensis]	[more]
gi\|672189307\|ref\|XP_008813808.1\|	1.1e-08	45.71	PREDICTED: uncharacterized protein LOC103724356 [Phoenix dactylifera]	[more]
gi\|565470652\|ref\|XP_006293129.1\|	5.4e-08	45.59	hypothetical protein CARUB_v10019435mg [Capsella rubella]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012587T1	MELO3C012587T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 1..63 score: 2.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012587	Watermelon (97103) v2	mewmbB186
MELO3C012587	Watermelon (97103) v2	mewmbB227
MELO3C012587	Wax gourd	mewgoB214
MELO3C012587	Cucumber (Gy14) v1	cgymeB182
MELO3C012587	Cucurbita maxima (Rimu)	cmameB464
MELO3C012587	Cucurbita moschata (Rifu)	cmomeB455
MELO3C012587	Wild cucumber (PI 183967)	cpimeB456
MELO3C012587	Wild cucumber (PI 183967)	cpimeB541
MELO3C012587	Cucumber (Chinese Long) v2	cumeB533
MELO3C012587	Watermelon (Charleston Gray)	mewcgB179
MELO3C012587	Watermelon (Charleston Gray)	mewcgB203
MELO3C012587	Watermelon (97103) v1	mewmB203
MELO3C012587	Cucurbita pepo (Zucchini)	cpemeB226
MELO3C012587	Bottle gourd (USVL1VR-Ls)	lsimeB063
MELO3C012587	Bottle gourd (USVL1VR-Ls)	lsimeB091
MELO3C012587	Cucumber (Gy14) v2	cgybmeB471
MELO3C012587	Silver-seed gourd	carmeB0537
MELO3C012587	Cucumber (Chinese Long) v3	cucmeB467
MELO3C012587	Cucumber (Chinese Long) v3	cucmeB551