MELO3C012585 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012585
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Nuclear-pore anchor
Location	chr1 : 19518239 .. 19518653 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAATTTGAGCAACAGGTGAATTTCATTTGTTTGAGTGCAGGATGATGATTCCGTTTGTATTTGTTTGCTTATCTTTGTCTTTTTATGCAATAGAGAGTAGAAATGAATGGCGTGTTAGCTCGAAATGTAGAGTTCTCACAACTTATTGTAGACTACCAAAGAAAACTGCGGGAAGTTTCAGAATCCCTGCACAGTGCTGATGAACAGTCCCGGAAATTGAGTATTGAGGTAAAACTTTATGCGTAATCATTAAGTGGGGTTTGTTACCATTCTCATCTCCTACTTCTGTATTTTAAAGGTGTCTGTCTTAAAGTCTGAAAAGGACTTGTTATCAAATGCTGAAAAGAGAGCACAGGATGAAATTCAAAAGCTGTCTGAAAGATTATTCCGGGTGCAGGTTAGCTTCTAA

mRNA sequence

ATGAAGGAATTTGAGCAACAGAGAGTAGAAATGAATGGCGTGTTAGCTCGAAATGTAGAGTTCTCACAACTTATTGTAGACTACCAAAGAAAACTGCGGGAAGTTTCAGAATCCCTGCACAGTGCTGATGAACAGTCCCGGAAATTGAGTATTGAGGTGTCTGTCTTAAAGTCTGAAAAGGACTTGTTATCAAATGCTGAAAAGAGAGCACAGGATGAAATTCAAAAGCTGTCTGAAAGATTATTCCGGGTGCAGGTTAGCTTCTAA

Coding sequence (CDS)

ATGAAGGAATTTGAGCAACAGAGAGTAGAAATGAATGGCGTGTTAGCTCGAAATGTAGAGTTCTCACAACTTATTGTAGACTACCAAAGAAAACTGCGGGAAGTTTCAGAATCCCTGCACAGTGCTGATGAACAGTCCCGGAAATTGAGTATTGAGGTGTCTGTCTTAAAGTCTGAAAAGGACTTGTTATCAAATGCTGAAAAGAGAGCACAGGATGAAATTCAAAAGCTGTCTGAAAGATTATTCCGGGTGCAGGTTAGCTTCTAA

Protein sequence

MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEKDLLSNAEKRAQDEIQKLSERLFRVQVSF*

Homology

[Close]

BLAST of MELO3C012585 vs. Swiss-Prot
Match: NUA_ARATH (Nuclear-pore anchor OS=Arabidopsis thaliana GN=NUA PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.2e-28
Identity = 62/87 (71.26%), Postives = 75/87 (86.21%), Query Frame = 1


Query: 1   MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK 60
           MKE E++R EMN VLARN+EFSQLI+D+QRKLRE SESLH+A+E SRKLS+EVSVLK EK
Sbjct: 734 MKESERKREEMNSVLARNIEFSQLIIDHQRKLRESSESLHAAEEISRKLSMEVSVLKQEK 793

Query: 61  DLLSNAEKRAQDEIQKLSERLFRVQVS 88
           +LLSNAEKRA DE+  LS+R++R+Q +
Sbjct: 794 ELLSNAEKRASDEVSALSQRVYRLQAT 820

[Close]

BLAST of MELO3C012585 vs. TrEMBL
Match: A0A0A0K7K3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G252150 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 2.3e-37
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 1   MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK 60
           MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK
Sbjct: 30  MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK 89

Query: 61  DLLSNAEKRAQDEIQKLSERLFRVQVS 88
           DLLSNAEKRAQDEIQKLSERLFRVQ S
Sbjct: 90  DLLSNAEKRAQDEIQKLSERLFRVQTS 116

[Close]

BLAST of MELO3C012585 vs. TrEMBL
Match: W9QYR8_9ROSA (Nuclear-pore anchor OS=Morus notabilis GN=L484_019211 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.8e-27
Identity = 65/87 (74.71%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 1   MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK 60
           MKEFE QR E NGVLARNVEFSQ+IVDYQRKLRE SESLH+A+E SRKL++EVSVLK+EK
Sbjct: 721 MKEFEHQRTETNGVLARNVEFSQIIVDYQRKLRESSESLHAAEELSRKLNMEVSVLKNEK 780

Query: 61  DLLSNAEKRAQDEIQKLSERLFRVQVS 88
           ++L NAEKRA DE++ LS+R+ R+QVS
Sbjct: 781 EMLVNAEKRALDEVRNLSQRVHRLQVS 807

[Close]

BLAST of MELO3C012585 vs. TrEMBL
Match: A0A0D3D1T0_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.9e-26
Identity = 61/87 (70.11%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 1   MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK 60
           MKE E++R EMNGVLARN+EFSQLI+D+QRKLRE SESLH+A++ SRKLS+EVSVLK EK
Sbjct: 731 MKESERKREEMNGVLARNIEFSQLIIDHQRKLRESSESLHAAEDISRKLSMEVSVLKQEK 790

Query: 61  DLLSNAEKRAQDEIQKLSERLFRVQVS 88
           ++LSNAEKRA DE+  LS+R++R+Q +
Sbjct: 791 EVLSNAEKRASDEVSTLSQRVYRLQAT 817

[Close]

BLAST of MELO3C012585 vs. TrEMBL
Match: M4F208_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.9e-26
Identity = 61/87 (70.11%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 1   MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK 60
           MKE E++R EMNGVLARN+EFSQLI+D+QRKLRE SESLH+A++ SRKLS+EVSVLK EK
Sbjct: 684 MKESERKREEMNGVLARNIEFSQLIIDHQRKLRESSESLHAAEDISRKLSMEVSVLKQEK 743

Query: 61  DLLSNAEKRAQDEIQKLSERLFRVQVS 88
           ++LSNAEKRA DE+  LS+R++R+Q +
Sbjct: 744 EVLSNAEKRASDEVSTLSQRVYRLQAT 770

[Close]

BLAST of MELO3C012585 vs. TrEMBL
Match: A0A078DG60_BRANA (BnaA07g34790D protein OS=Brassica napus GN=BnaA07g34790D PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.9e-26
Identity = 61/87 (70.11%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 1   MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK 60
           MKE E++R EMNGVLARN+EFSQLI+D+QRKLRE SESLH+A++ SRKLS+EVSVLK EK
Sbjct: 739 MKESERKREEMNGVLARNIEFSQLIIDHQRKLRESSESLHAAEDISRKLSMEVSVLKQEK 798

Query: 61  DLLSNAEKRAQDEIQKLSERLFRVQVS 88
           ++LSNAEKRA DE+  LS+R++R+Q +
Sbjct: 799 EVLSNAEKRASDEVSTLSQRVYRLQAT 825

[Close]

BLAST of MELO3C012585 vs. TAIR10
Match: AT1G79280.2 (AT1G79280.2 nuclear pore anchor)

HSP 1 Score: 124.4 bits (311), Expect = 3.5e-29
Identity = 62/87 (71.26%), Postives = 75/87 (86.21%), Query Frame = 1


Query: 1   MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK 60
           MKE E++R EMN VLARN+EFSQLI+D+QRKLRE SESLH+A+E SRKLS+EVSVLK EK
Sbjct: 734 MKESERKREEMNSVLARNIEFSQLIIDHQRKLRESSESLHAAEEISRKLSMEVSVLKQEK 793

Query: 61  DLLSNAEKRAQDEIQKLSERLFRVQVS 88
           +LLSNAEKRA DE+  LS+R++R+Q +
Sbjct: 794 ELLSNAEKRASDEVSALSQRVYRLQAT 820

[Close]

BLAST of MELO3C012585 vs. NCBI nr
Match: gi|778726110|ref|XP_011659058.1| (PREDICTED: nuclear-pore anchor isoform X3 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-37
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 1   MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK 60
           MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK
Sbjct: 734 MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK 793

Query: 61  DLLSNAEKRAQDEIQKLSERLFRVQVS 88
           DLLSNAEKRAQDEIQKLSERLFRVQ S
Sbjct: 794 DLLSNAEKRAQDEIQKLSERLFRVQTS 820

[Close]

BLAST of MELO3C012585 vs. NCBI nr
Match: gi|700189074|gb|KGN44307.1| (hypothetical protein Csa_7G252150 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-37
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 1   MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK 60
           MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK
Sbjct: 30  MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK 89

Query: 61  DLLSNAEKRAQDEIQKLSERLFRVQVS 88
           DLLSNAEKRAQDEIQKLSERLFRVQ S
Sbjct: 90  DLLSNAEKRAQDEIQKLSERLFRVQTS 116

[Close]

BLAST of MELO3C012585 vs. NCBI nr
Match: gi|659092949|ref|XP_008447306.1| (PREDICTED: nuclear-pore anchor-like [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-37
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 1   MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK 60
           MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK
Sbjct: 602 MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK 661

Query: 61  DLLSNAEKRAQDEIQKLSERLFRVQVS 88
           DLLSNAEKRAQDEIQKLSERLFRVQ S
Sbjct: 662 DLLSNAEKRAQDEIQKLSERLFRVQAS 688

[Close]

BLAST of MELO3C012585 vs. NCBI nr
Match: gi|778726106|ref|XP_011659057.1| (PREDICTED: nuclear-pore anchor isoform X2 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-37
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 1   MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK 60
           MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK
Sbjct: 734 MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK 793

Query: 61  DLLSNAEKRAQDEIQKLSERLFRVQVS 88
           DLLSNAEKRAQDEIQKLSERLFRVQ S
Sbjct: 794 DLLSNAEKRAQDEIQKLSERLFRVQTS 820

[Close]

BLAST of MELO3C012585 vs. NCBI nr
Match: gi|778726103|ref|XP_011659056.1| (PREDICTED: nuclear-pore anchor isoform X1 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-37
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1


Query: 1   MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK 60
           MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK
Sbjct: 734 MKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSRKLSIEVSVLKSEK 793

Query: 61  DLLSNAEKRAQDEIQKLSERLFRVQVS 88
           DLLSNAEKRAQDEIQKLSERLFRVQ S
Sbjct: 794 DLLSNAEKRAQDEIQKLSERLFRVQTS 820

The following BLAST results are available for this feature:

BLAST of MELO3C012585 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NUA_ARATH	6.2e-28	71.26	Nuclear-pore anchor OS=Arabidopsis thaliana GN=NUA PE=1 SV=1	[more]

BLAST of MELO3C012585 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7K3_CUCSA	2.3e-37	98.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G252150 PE=4 SV=1	[more]
W9QYR8_9ROSA	2.8e-27	74.71	Nuclear-pore anchor OS=Morus notabilis GN=L484_019211 PE=4 SV=1	[more]
A0A0D3D1T0_BRAOL	6.9e-26	70.11	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
M4F208_BRARP	6.9e-26	70.11	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A078DG60_BRANA	6.9e-26	70.11	BnaA07g34790D protein OS=Brassica napus GN=BnaA07g34790D PE=4 SV=1	[more]

BLAST of MELO3C012585 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79280.2	3.5e-29	71.26	nuclear pore anchor	[more]

BLAST of MELO3C012585 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778726110\|ref\|XP_011659058.1\|	3.3e-37	98.85	PREDICTED: nuclear-pore anchor isoform X3 [Cucumis sativus]	[more]
gi\|700189074\|gb\|KGN44307.1\|	3.3e-37	98.85	hypothetical protein Csa_7G252150 [Cucumis sativus]	[more]
gi\|659092949\|ref\|XP_008447306.1\|	3.3e-37	98.85	PREDICTED: nuclear-pore anchor-like [Cucumis melo]	[more]
gi\|778726106\|ref\|XP_011659057.1\|	3.3e-37	98.85	PREDICTED: nuclear-pore anchor isoform X2 [Cucumis sativus]	[more]
gi\|778726103\|ref\|XP_011659056.1\|	3.3e-37	98.85	PREDICTED: nuclear-pore anchor isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006606	protein import into nucleus
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012585T1	MELO3C012585T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 25..45 score: -coord: 56..80 scor
None	No IPR available	PANTHER	PTHR18898	NUCLEOPROTEIN TPR-RELATED	coord: 1..86 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012585	Watermelon (97103) v2	mewmbB186
MELO3C012585	Watermelon (97103) v2	mewmbB227
MELO3C012585	Wax gourd	mewgoB214
MELO3C012585	Cucumber (Gy14) v1	cgymeB182
MELO3C012585	Cucurbita maxima (Rimu)	cmameB464
MELO3C012585	Cucurbita moschata (Rifu)	cmomeB455
MELO3C012585	Wild cucumber (PI 183967)	cpimeB456
MELO3C012585	Wild cucumber (PI 183967)	cpimeB541
MELO3C012585	Cucumber (Chinese Long) v2	cumeB533
MELO3C012585	Watermelon (Charleston Gray)	mewcgB179
MELO3C012585	Watermelon (Charleston Gray)	mewcgB203
MELO3C012585	Watermelon (97103) v1	mewmB203
MELO3C012585	Cucurbita pepo (Zucchini)	cpemeB226
MELO3C012585	Bottle gourd (USVL1VR-Ls)	lsimeB063
MELO3C012585	Bottle gourd (USVL1VR-Ls)	lsimeB091
MELO3C012585	Cucumber (Gy14) v2	cgybmeB471
MELO3C012585	Silver-seed gourd	carmeB0537
MELO3C012585	Cucumber (Chinese Long) v3	cucmeB467
MELO3C012585	Cucumber (Chinese Long) v3	cucmeB551