MELO3C012580 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012580
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transcription factor, putative
Location	chr1 : 19434386 .. 19434640 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCCTAATTCAAATTCGATTTTATGGGTGAACCCTACTACCGTTAATTTTGGGACTAGAGTTGTCAGGGAGTCGAATCCGGTGAGGTCGATGACAGGGAAGAGGAAGGAAAGGGAAAGGGAACGAGACCCATTTGCAAATATGGTGTTCGCCATTAAAACTTTGGGAGATAGGTTTGTGAGAATGGAGAGGATGAAGGTGGAAATGGCTAAAGAGATCGAAGCTATGAGAATGGAAATAGAGATTAAATGA

mRNA sequence

ATGACCCCTAATTCAAATTCGATTTTATGGGTGAACCCTACTACCGTTAATTTTGGGACTAGAGTTGTCAGGGAGTCGAATCCGGTGAGGTCGATGACAGGGAAGAGGAAGGAAAGGGAAAGGGAACGAGACCCATTTGCAAATATGGTGTTCGCCATTAAAACTTTGGGAGATAGGTTTGTGAGAATGGAGAGGATGAAGGTGGAAATGGCTAAAGAGATCGAAGCTATGAGAATGGAAATAGAGATTAAATGA

Coding sequence (CDS)

ATGACCCCTAATTCAAATTCGATTTTATGGGTGAACCCTACTACCGTTAATTTTGGGACTAGAGTTGTCAGGGAGTCGAATCCGGTGAGGTCGATGACAGGGAAGAGGAAGGAAAGGGAAAGGGAACGAGACCCATTTGCAAATATGGTGTTCGCCATTAAAACTTTGGGAGATAGGTTTGTGAGAATGGAGAGGATGAAGGTGGAAATGGCTAAAGAGATCGAAGCTATGAGAATGGAAATAGAGATTAAATGA

Protein sequence

MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFANMVFAIKTLGDRFVRMERMKVEMAKEIEAMRMEIEIK*

Homology

[Close]

BLAST of MELO3C012580 vs. TrEMBL
Match: A0A0A0L413_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129620 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.1e-28
Identity = 66/84 (78.57%), Postives = 72/84 (85.71%), Query Frame = 1


Query: 1   MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFANMVFAIKTLGDRF 60
           M PNSN +  +NP  VNFGTRVVRESNPVR +TGKR ERERERDP A MV AIKTLGD F
Sbjct: 248 MNPNSNPVSGMNPAAVNFGTRVVRESNPVRPVTGKRGERERERDPVAEMVSAIKTLGDGF 307

Query: 61  VRMERMKVEMAKEIEAMRMEIEIK 85
           VRMERMK+EMA+EIEAMRME+EIK
Sbjct: 308 VRMERMKMEMAREIEAMRMEMEIK 331

[Close]

BLAST of MELO3C012580 vs. TrEMBL
Match: M5X9S0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010478m2g PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-12
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 1


Query: 4   NSNSILWVNPTTVNFGT-RVVRE-SNPVRSMTGKRKE--RERERDPFANMVFAIKTLGDR 63
           NSNS     P    +G+ +V+RE  N VR   GKR+   RERERDP A MV AIK LGD 
Sbjct: 132 NSNSGSGSGP---GYGSAKVMRECGNSVRPGLGKREREGRERERDPVAEMVSAIKVLGDG 191

Query: 64  FVRMERMKVEMAKEIEAMRMEIEIK 85
           FVRME+MK+EMA+EIE MRME+E+K
Sbjct: 192 FVRMEQMKMEMAREIETMRMEMEMK 213

[Close]

BLAST of MELO3C012580 vs. TrEMBL
Match: W9R598_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008033 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-12
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 16  VNFGTRVVRESNPVRSMTGKRKERERERDPFANMVFAIKTLGDRFVRMERMKVEMAKEIE 75
           VNFGT+VV+E +  R+ +G  K RERERDP   MV AIK LG+ FVRME+MK+EMA+EIE
Sbjct: 258 VNFGTKVVKECSSGRA-SGLGK-RERERDPVGEMVSAIKALGEGFVRMEQMKMEMAREIE 317

Query: 76  AMRMEIEIK 85
            +RME+E+K
Sbjct: 318 TIRMEMEMK 324

[Close]

BLAST of MELO3C012580 vs. TrEMBL
Match: A2Q1W1_MEDTR (MADF; Homeodomain-like OS=Medicago truncatula GN=MTR_7g081190 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.1e-12
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 1


Query: 16  VNFGTRVVRESNPVRSMTGKRK-----ERERERDPFANMVFAIKTLGDRFVRMERMKVEM 75
           +N GTR+V+E    R + GKR+     ERERERDP   MV AIK L D FVRME+MK+EM
Sbjct: 257 INGGTRLVKE----RVVLGKRERERDVERERERDPIGEMVNAIKVLRDGFVRMEQMKMEM 316

Query: 76  AKEIEAMRMEIEIK 85
           A+EIE MRME+E+K
Sbjct: 317 AREIETMRMEMEMK 326

[Close]

BLAST of MELO3C012580 vs. TrEMBL
Match: A0A0D2S0Z5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G167100 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.7e-11
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1


Query: 18  FGTRVVRESNPVRSMTGKRKERERERDPFANMVFAIKTLGDRFVRMERMKVEMAKEIEAM 77
           +GTR++R    +   T    +RERERD    MV AIK LGD FVRME+MK+EMA+EIE M
Sbjct: 273 YGTRILRGFEDMPEKTAASGKRERERDAVTEMVSAIKVLGDGFVRMEQMKMEMAREIETM 332

Query: 78  RMEIEIK 85
           RME+E+K
Sbjct: 333 RMEMEMK 339

[Close]

BLAST of MELO3C012580 vs. TAIR10
Match: AT2G44730.1 (AT2G44730.1 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein)

HSP 1 Score: 56.6 bits (135), Expect = 8.6e-09
Identity = 31/70 (44.29%), Postives = 39/70 (55.71%), Query Frame = 1


Query: 17  NFGTRVVR--ESNPVRSMTGKRKERERERDPFANMVFAIKTLGDRFVRMERMKVEMAKEI 76
           ++G RVVR  E    R      K  E + DP   +  AIK LGD  VR E+ ++EM +EI
Sbjct: 267 SYGARVVRIPEGGGKRGREMMMKTEEDDNDPMVEIASAIKLLGDTLVRTEQTRMEMTREI 326

Query: 77  EAMRMEIEIK 85
           EAMRM+ E+K
Sbjct: 327 EAMRMDTEMK 336

[Close]

BLAST of MELO3C012580 vs. NCBI nr
Match: gi|449432382|ref|XP_004133978.1| (PREDICTED: trihelix transcription factor ASIL2 isoform X1 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 6.0e-28
Identity = 66/84 (78.57%), Postives = 72/84 (85.71%), Query Frame = 1


Query: 1   MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFANMVFAIKTLGDRF 60
           M PNSN +  +NP  VNFGTRVVRESNPVR +TGKR ERERERDP A MV AIKTLGD F
Sbjct: 248 MNPNSNPVSGMNPAAVNFGTRVVRESNPVRPVTGKRGERERERDPVAEMVSAIKTLGDGF 307

Query: 61  VRMERMKVEMAKEIEAMRMEIEIK 85
           VRMERMK+EMA+EIEAMRME+EIK
Sbjct: 308 VRMERMKMEMAREIEAMRMEMEIK 331

[Close]

BLAST of MELO3C012580 vs. NCBI nr
Match: gi|659075756|ref|XP_008438313.1| (PREDICTED: B-cell lymphoma/leukemia 11B [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 6.0e-28
Identity = 66/84 (78.57%), Postives = 72/84 (85.71%), Query Frame = 1


Query: 1   MTPNSNSILWVNPTTVNFGTRVVRESNPVRSMTGKRKERERERDPFANMVFAIKTLGDRF 60
           M PNSN +  +NP  VNFGTRVVRESNPVR +TGKR ERERERDP A MV AIKTLGD F
Sbjct: 248 MNPNSNPVSGLNPAAVNFGTRVVRESNPVRPVTGKRGERERERDPVAEMVSAIKTLGDGF 307

Query: 61  VRMERMKVEMAKEIEAMRMEIEIK 85
           VRMERMK+EMA+EIEAMRME+EIK
Sbjct: 308 VRMERMKMEMAREIEAMRMEMEIK 331

[Close]

BLAST of MELO3C012580 vs. NCBI nr
Match: gi|657949536|ref|XP_008343662.1| (PREDICTED: uncharacterized protein LOC103406460 [Malus domestica])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 12  NPTTVNFGTRVVRE-SNPVRSMTGKRKE--RERERDPFANMVFAIKTLGDRFVRMERMKV 71
           NP +V    +V+RE  N  R   GKR+   RERERDP A MV AIK LGD FVRME+MK+
Sbjct: 251 NPASVYGSAKVMRECGNSGRPGLGKREGNGRERERDPVAEMVSAIKLLGDGFVRMEQMKM 310

Query: 72  EMAKEIEAMRMEIEIK 85
           EMA+E+EAMRME+E+K
Sbjct: 311 EMAREVEAMRMEMEMK 326

[Close]

BLAST of MELO3C012580 vs. NCBI nr
Match: gi|645253048|ref|XP_008232402.1| (PREDICTED: uncharacterized protein LOC103331547, partial [Prunus mume])

HSP 1 Score: 79.0 bits (193), Expect = 4.6e-12
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 1


Query: 4   NSNSILWVNPTTVNFGT-RVVRE-SNPVRSMTGKRKE--RERERDPFANMVFAIKTLGDR 63
           NSNS     P    +G+ +V+RE  N VR   GKR+   RERERDP A MV AIK LGD 
Sbjct: 196 NSNSGSGSGP---GYGSAKVMRECGNSVRPGLGKREREGRERERDPVAEMVSAIKVLGDG 255

Query: 64  FVRMERMKVEMAKEIEAMRMEIEIK 85
           FVRME+MK+EMA+EIE MRME+E+K
Sbjct: 256 FVRMEQMKMEMAREIETMRMEMEMK 277

[Close]

BLAST of MELO3C012580 vs. NCBI nr
Match: gi|596058739|ref|XP_007221022.1| (hypothetical protein PRUPE_ppa010478m2g [Prunus persica])

HSP 1 Score: 79.0 bits (193), Expect = 4.6e-12
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 1


Query: 4   NSNSILWVNPTTVNFGT-RVVRE-SNPVRSMTGKRKE--RERERDPFANMVFAIKTLGDR 63
           NSNS     P    +G+ +V+RE  N VR   GKR+   RERERDP A MV AIK LGD 
Sbjct: 132 NSNSGSGSGP---GYGSAKVMRECGNSVRPGLGKREREGRERERDPVAEMVSAIKVLGDG 191

Query: 64  FVRMERMKVEMAKEIEAMRMEIEIK 85
           FVRME+MK+EMA+EIE MRME+E+K
Sbjct: 192 FVRMEQMKMEMAREIETMRMEMEMK 213

The following BLAST results are available for this feature:

BLAST of MELO3C012580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L413_CUCSA	4.1e-28	78.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129620 PE=4 SV=1	[more]
M5X9S0_PRUPE	3.2e-12	58.82	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010478m2g PE=4 SV=1	[more]
W9R598_9ROSA	4.2e-12	62.32	Uncharacterized protein OS=Morus notabilis GN=L484_008033 PE=4 SV=1	[more]
A2Q1W1_MEDTR	7.1e-12	59.46	MADF; Homeodomain-like OS=Medicago truncatula GN=MTR_7g081190 PE=4 SV=1	[more]
A0A0D2S0Z5_GOSRA	2.7e-11	56.72	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G167100 PE=4 SV=1	[more]

BLAST of MELO3C012580 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44730.1	8.6e-09	44.29	Alcohol dehydrogenase transcription factor Myb/SANT-like family prot...	[more]

BLAST of MELO3C012580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432382\|ref\|XP_004133978.1\|	6.0e-28	78.57	PREDICTED: trihelix transcription factor ASIL2 isoform X1 [Cucumis sativus]	[more]
gi\|659075756\|ref\|XP_008438313.1\|	6.0e-28	78.57	PREDICTED: B-cell lymphoma/leukemia 11B [Cucumis melo]	[more]
gi\|657949536\|ref\|XP_008343662.1\|	1.2e-12	60.53	PREDICTED: uncharacterized protein LOC103406460 [Malus domestica]	[more]
gi\|645253048\|ref\|XP_008232402.1\|	4.6e-12	58.82	PREDICTED: uncharacterized protein LOC103331547, partial [Prunus mume]	[more]
gi\|596058739\|ref\|XP_007221022.1\|	4.6e-12	58.82	hypothetical protein PRUPE_ppa010478m2g [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012580T1	MELO3C012580T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31307	FAMILY NOT NAMED	coord: 4..84 score: 1.6
None	No IPR available	PANTHER	PTHR31307:SF3	ALCOHOL DEHYDROGENASE TRANSCRIPTION FACTOR MYB/SANT-LIKE PROTEIN	coord: 4..84 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012580	Cucumber (Gy14) v2	cgybmeB471
MELO3C012580	Silver-seed gourd	carmeB0537
MELO3C012580	Cucumber (Chinese Long) v3	cucmeB467
MELO3C012580	Cucumber (Chinese Long) v3	cucmeB551
MELO3C012580	Watermelon (97103) v2	mewmbB186
MELO3C012580	Watermelon (97103) v2	mewmbB227
MELO3C012580	Wax gourd	mewgoB214
MELO3C012580	Cucumber (Gy14) v1	cgymeB182
MELO3C012580	Cucumber (Gy14) v1	cgymeB408
MELO3C012580	Cucurbita maxima (Rimu)	cmameB464
MELO3C012580	Cucurbita moschata (Rifu)	cmomeB455
MELO3C012580	Wild cucumber (PI 183967)	cpimeB456
MELO3C012580	Wild cucumber (PI 183967)	cpimeB541
MELO3C012580	Cucumber (Chinese Long) v2	cumeB533
MELO3C012580	Watermelon (Charleston Gray)	mewcgB179
MELO3C012580	Watermelon (Charleston Gray)	mewcgB203
MELO3C012580	Watermelon (97103) v1	mewmB203
MELO3C012580	Cucurbita pepo (Zucchini)	cpemeB226
MELO3C012580	Bottle gourd (USVL1VR-Ls)	lsimeB063
MELO3C012580	Bottle gourd (USVL1VR-Ls)	lsimeB091