MELO3C012541.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C012541.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionglutamic acid-rich protein isoform X2
Locationchr01 : 19848278 .. 19848885 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGAGAGAAGAAGAAGAAGAGAAAGCGACAGATGAAGGCATCGGACCCGACGACGAAAACAACGGCGCATTGGTGGGTCCAGAGGAGGAGGACCAATCAAAGGAGCGAGAAACTCCGCCGCCGGAACCCGAACCGGAGAGAAAAACACAAACAGAAACATCTGTTCTACCAGATTGCTTGCTGTTAATGATGTACGAGCCAAAGCTAACAATGGAGGTATCGAAGGAGACATGGTTTTGCAGCGCAGACTTCATAAGATGCGTTCCGACCAGGGAAAAGAAAACGGTCGGCAGAGACCCACCACCGCCTCCCCCACCGAAGAAATGAGAAATGAAGCCAACGGACACTATGCAGACGGCAGTTATTGTTCAGCCGACAAGATGGTCGTGTTCGTTTCCAGCGGCAGCGGCTGCGGCGGCGATGATAGAACAGAAGCTAGCAAGGGCGAAGGGTTACGAGCCGTTTGTTCTTACTAGATGCAAGTCGGAGTCGATGAGATCGTCGACTAAGCTGGTGCCAGATGCTTGCTTTTAGAAGGATCGCAAGCTCGAGCCACACCGTCCGGCTACCTTTGGCGTCGGCGCGGCTGAAGTTGGATTTTGA

mRNA sequence

ATGGGAAGAGAGAAGAAGAAGAAGAGAAAGCGACAGATGAAGGCATCGGACCCGACGACGAAAACAACGGCGCATTGGTGGGTCCAGAGGAGGAGGACCAATCAAAGGAGCGAGAAACTCCGCCGCCGGAACCCGAACCGGAGAGAAAAACACAAACAGAAACATCTGTTCTACCAGATTGCTTGCTGTTAATGATGTACGAGCCAAAGCTAACAATGGAGGGAAAAGAAAACGGTCGGCAGAGACCCACCACCGCCTCCCCCACCGAAGAAATGAGAAATGAAGCCAACGGACACTATGCAGACGGCAGTTATTGTTCAGCCGACAAGATGGTCGTGTTCGTTTCCAGCGGCAGCGGCTGCGGCGGCGATGATAGAACAGAAGCTAGCAAGGGCGAAGGGTTACGAGCCAAGGATCGCAAGCTCGAGCCACACCGTCCGGCTACCTTTGGCGTCGGCGCGGCTGAAGTTGGATTTTGA

Coding sequence (CDS)

GGGAAGAGAGAAGAAGAAGAAGAGAAAGCGACAGATGAAGGCATCGGACCCGACGACGAAAACAACGGCGCATTGGTGGGTCCAGAGGAGGAGGACCAATCAAAGGAGCGAGAAACTCCGCCGCCGGAACCCGAACCGGAGAGAAAAACACAAACAGAAACATCTGTTCTACCAGATTGCTTGCTGTTAATGATGTACGAGCCAAAGCTAACAATGGAGGGAAAAGAAAACGGTCGGCAGAGACCCACCACCGCCTCCCCCACCGAAGAAATGAGAAATGAAGCCAACGGACACTATGCAGACGGCAGTTATTGTTCAGCCGACAAGATGGTCGTGTTCGTTTCCAGCGGCAGCGGCTGCGGCGGCGATGATAGAACAGAAGCTAGCAAGGGCGAAGGGTTACGAGCCAAGGATCGCAAGCTCGAGCCACACCGTCCGGCTACCTTTGGCGTCGGCGCGGCTGAAGTTGGATTTTGA

Protein sequence

GKREEEEEKATDEGIGPDDENNGALVGPEEEDQSKERETPPPEPEPERKTQTETSVLPDCLLLMMYEPKLTMEGKENGRQRPTTASPTEEMRNEANGHYADGSYCSADKMVVFVSSGSGCGGDDRTEASKGEGLRAKDRKLEPHRPATFGVGAAEVGF
BLAST of MELO3C012541.2 vs. NCBI nr
Match: XP_022984940.1 (uncharacterized protein LOC111483061 [Cucurbita maxima])

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 84/195 (43.08%), Postives = 101/195 (51.79%), Query Frame = 0

Query: 7   EEKATDEGIGPDDENNGALVGPEXXXXXXXXXXXXXXXXXXXXXXXXXXVLPDCLLLMMY 66
           +EKATDEGIG D +N+  L+GPE   XXXXXXXXXXXXXXXXXXXXX  VLPDCLLLMMY
Sbjct: 543 KEKATDEGIGSDTQNDDELMGPE--EXXXXXXXXXXXXXXXXXXXXXSPVLPDCLLLMMY 602

Query: 67  EPKLTME-GKEN----------------------------------GRQRPTTASPTEEM 126
           EPKL+ME  KE                                        T  +  +  
Sbjct: 603 EPKLSMEVSKETWVCSTDFIRCVPTREKKXXXXXXXXXXXXXXXXXXXXXXTQTAVIQPA 662

Query: 127 RNEANGHYADGSYCSADKMVVFVSSG------SGCGGDDRTEASK--GEGLRAKDRKLEP 159
           R   +   A  +    ++  +  + G      + C  +    +SK   +    KDRKLEP
Sbjct: 663 RWSCSFPAAAAAATMIEQKKLVRAKGYEPFVLTRCKSEPMRSSSKLAPDACFWKDRKLEP 722

BLAST of MELO3C012541.2 vs. NCBI nr
Match: XP_022922997.1 (uncharacterized protein LOC111430815 [Cucurbita moschata])

HSP 1 Score: 61.2 bits (147), Expect = 3.6e-06
Identity = 79/195 (40.51%), Postives = 98/195 (50.26%), Query Frame = 0

Query: 7   EEKATDEGIGPDDENNGALVGPEXXXXXXXXXXXXXXXXXXXXXXXXXXVLPDCLLLMMY 66
           +EKATDEGI  D +N+  ++GPE     XXXXXXXXXXXXXXXXXXX  VLPDCLLLMMY
Sbjct: 544 KEKATDEGIRSDTQNDDEMMGPE--AEDXXXXXXXXXXXXXXXXXXXSPVLPDCLLLMMY 603

Query: 67  EPKLTME-GKEN----------------------------------GRQRPTTASPTEEM 126
           EPKL+ME  KE                                        T  +  +  
Sbjct: 604 EPKLSMEVSKETWVCSRDFIRCVPTREKKXXXXXXXXXXXXXXXXXXXXXXTQTAVIQPA 663

Query: 127 RNEANGHYADGSYCSADKMVVFVSSG------SGCGGDDRTEASK--GEGLRAKDRKLEP 159
           R   +   A  +    ++  +  + G      + C  +    +SK   +    KDRKLEP
Sbjct: 664 RWSCSFPAAAAAATMIEQKKLVRAKGYEPFVLTRCKSEPMRSSSKLAPDACFWKDRKLEP 723

BLAST of MELO3C012541.2 vs. NCBI nr
Match: XP_023553192.1 (muscle M-line assembly protein unc-89-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-05
Identity = 70/195 (35.90%), Postives = 84/195 (43.08%), Query Frame = 0

Query: 7   EEKATDEGIGPDDENNGALVGPEXXXXXXXXXXXXXXXXXXXXXXXXXXVLPDCLLLMMY 66
           +EKATDEGI  D +N+  ++GPE           XXXXXXXXX      VLPDCLLLMMY
Sbjct: 542 KEKATDEGIRSDTQNDDEMMGPE--AEDQSKERDXXXXXXXXXTQTESPVLPDCLLLMMY 601

Query: 67  EPKLTMEGKENGRQRPT---TASPTEEMR-------NEANGHYADGSYCSADKMVVFVSS 126
           EPKL+ME  +      T      PT E +                       +  V   +
Sbjct: 602 EPKLSMEVSKETWVCSTDFIRCVPTREKKXXXXXXXXXXXXXXXXXXXXXXTQTAVIQPA 661

Query: 127 GSGCGGDDRTEAS----------------------KGEGLRA-----------KDRKLEP 159
              C       A+                      K E +R+           KDRKLEP
Sbjct: 662 RWSCSFPAAAAAATMIEQKKLVRAKGYEPFVLTRCKSEPMRSSSNLAPDACFWKDRKLEP 721

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022984940.11.9e-0743.08uncharacterized protein LOC111483061 [Cucurbita maxima][more]
XP_022922997.13.6e-0640.51uncharacterized protein LOC111430815 [Cucurbita moschata][more]
XP_023553192.11.0e-0535.90muscle M-line assembly protein unc-89-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012541.2.1MELO3C012541.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..158
NoneNo IPR availablePANTHERPTHR33448:SF1CHLOROPLAST PROTEIN HCF243coord: 5..73
coord: 137..158
NoneNo IPR availablePANTHERPTHR33448FAMILY NOT NAMEDcoord: 5..73
coord: 137..158

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C012541.2Cucumber (Gy14) v1cgymedB150
MELO3C012541.2Cucurbita maxima (Rimu)cmamedB101
MELO3C012541.2Cucurbita maxima (Rimu)cmamedB538
MELO3C012541.2Cucurbita maxima (Rimu)cmamedB588
MELO3C012541.2Cucurbita maxima (Rimu)cmamedB643
MELO3C012541.2Cucurbita moschata (Rifu)cmomedB092
MELO3C012541.2Cucurbita moschata (Rifu)cmomedB522
MELO3C012541.2Cucurbita moschata (Rifu)cmomedB579
MELO3C012541.2Cucurbita moschata (Rifu)cmomedB631
MELO3C012541.2Cucurbita pepo (Zucchini)cpemedB262
MELO3C012541.2Cucurbita pepo (Zucchini)cpemedB319
MELO3C012541.2Cucurbita pepo (Zucchini)cpemedB716
MELO3C012541.2Cucurbita pepo (Zucchini)cpemedB816
MELO3C012541.2Wild cucumber (PI 183967)cpimedB096
MELO3C012541.2Wild cucumber (PI 183967)cpimedB526
MELO3C012541.2Cucumber (Chinese Long) v2cumedB096
MELO3C012541.2Cucumber (Chinese Long) v2cumedB512
MELO3C012541.2Bottle gourd (USVL1VR-Ls)lsimedB068
MELO3C012541.2Bottle gourd (USVL1VR-Ls)lsimedB102
MELO3C012541.2Watermelon (Charleston Gray)medwcgB186
MELO3C012541.2Watermelon (Charleston Gray)medwcgB191
MELO3C012541.2Watermelon (97103) v1medwmB231
MELO3C012541.2Watermelon (97103) v1medwmB244
MELO3C012541.2Silver-seed gourdcarmedB0888
MELO3C012541.2Cucumber (Chinese Long) v3cucmedB099
MELO3C012541.2Cucumber (Chinese Long) v3cucmedB539
MELO3C012541.2Watermelon (97103) v2medwmbB162
MELO3C012541.2Watermelon (97103) v2medwmbB165
MELO3C012541.2Wax gourdmedwgoB223
MELO3C012541.2Wax gourdmedwgoB232
MELO3C012541.2Cucumber (Gy14) v2cgybmedB083
MELO3C012541.2Cucumber (Gy14) v2cgybmedB468
MELO3C012541.2Cucumber (Gy14) v1cgymedB406