MELO3C012517 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012517
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Zinc finger (C3HC4-type RING finger) family protein
Location	chr1 : 18051271 .. 18051699 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTTTTTATGGGCATTCTCTTGTTTAGCATGAACTTTGTTGAAATTGCAATTGCAATTAGAACCATCAAACGTCGTCCTTTTACAGATAATGCCAAAGTTATATGTGGTCCACCAAAAAGGCCTATAGATTATGAATTAGATGATGATGTACACAAATATGCAAGCTGGTACAATACTGTTTATCCTTGCAAGTCTCTACGAAATGCCAAACATAGTATCAATGGAAACGAAGTAAGAAATATTTTTGTTGACAACACCTCACAAAAGATTAAAGGAGATAAAGATCATCATATTGTTGATAACACCTCACTGCAGAAGATTACAGGGGATGAAGATCATCATATTATTGTTGATAGCACCTCACAAGAGATTAAAGGGGAGAAAGATTATCATTTGATTCTTCCTCAACCATCCATTGTTTAA

mRNA sequence

ATGGCAGTTTTTATGGGCATTCTCTTGTTTAGCATGAACTTTGTTGAAATTGCAATTGCAATTAGAACCATCAAACGTCGTCCTTTTACAGATAATGCCAAAGTTATATGTGGTCCACCAAAAAGGCCTATAGATTATGAATTAGATGATGATGTACACAAATATGCAAGCTGGTACAATACTGTTTATCCTTGCAAGTCTCTACGAAATGCCAAACATAGTATCAATGGAAACGAAGTAAGAAATATTTTTGTTGACAACACCTCACAAAAGATTAAAGGAGATAAAGATCATCATATTGTTGATAACACCTCACTGCAGAAGATTACAGGGGATGAAGATCATCATATTATTGTTGATAGCACCTCACAAGAGATTAAAGGGGAGAAAGATTATCATTTGATTCTTCCTCAACCATCCATTGTTTAA

Coding sequence (CDS)

ATGGCAGTTTTTATGGGCATTCTCTTGTTTAGCATGAACTTTGTTGAAATTGCAATTGCAATTAGAACCATCAAACGTCGTCCTTTTACAGATAATGCCAAAGTTATATGTGGTCCACCAAAAAGGCCTATAGATTATGAATTAGATGATGATGTACACAAATATGCAAGCTGGTACAATACTGTTTATCCTTGCAAGTCTCTACGAAATGCCAAACATAGTATCAATGGAAACGAAGTAAGAAATATTTTTGTTGACAACACCTCACAAAAGATTAAAGGAGATAAAGATCATCATATTGTTGATAACACCTCACTGCAGAAGATTACAGGGGATGAAGATCATCATATTATTGTTGATAGCACCTCACAAGAGATTAAAGGGGAGAAAGATTATCATTTGATTCTTCCTCAACCATCCATTGTTTAA

Protein sequence

MAVFMGILLFSMNFVEIAIAIRTIKRRPFTDNAKVICGPPKRPIDYELDDDVHKYASWYNTVYPCKSLRNAKHSINGNEVRNIFVDNTSQKIKGDKDHHIVDNTSLQKITGDEDHHIIVDSTSQEIKGEKDYHLILPQPSIV*

Homology

[Close]

BLAST of MELO3C012517 vs. TrEMBL
Match: A0A0A0K605_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G269050 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.4e-52
Identity = 107/143 (74.83%), Postives = 122/143 (85.31%), Query Frame = 1


Query: 1   MAVFMGILLFSMNFVEIAIAIRTIKRRPFTDNAKVICGPPKRPIDYELDDDVHKYASWYN 60
           MAVF+GILLFS+NFVEIA A R IKRR + DN KV+CGPP+R ID+ELDDD  KYASWYN
Sbjct: 8   MAVFIGILLFSINFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQKYASWYN 67

Query: 61  TVYPCKSLRNAKHSINGNEVRNIFVDNTSQKIKGDKDHHIVDNTSLQKITGDEDHHIIVD 120
           TVYPCKSLR AKHSING++V N F  NTSQ +KGDKD HIVDNTS Q+I GD+DHH IVD
Sbjct: 68  TVYPCKSLRKAKHSINGDKVGNTFDVNTSQNVKGDKDPHIVDNTS-QEIKGDKDHH-IVD 127

Query: 121 STSQEIKGEKDYHL-ILPQPSIV 143
           + SQEIKG+KD+HL ILPQPS+V
Sbjct: 128 TISQEIKGDKDHHLIILPQPSMV 148

[Close]

BLAST of MELO3C012517 vs. TrEMBL
Match: A0A0A0K3T5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G270050 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 9.1e-52
Identity = 107/143 (74.83%), Postives = 121/143 (84.62%), Query Frame = 1


Query: 1   MAVFMGILLFSMNFVEIAIAIRTIKRRPFTDNAKVICGPPKRPIDYELDDDVHKYASWYN 60
           MAVF+GILLFS+NFVEIA A R IKRR + DN KV+CGPP+R ID+ELDDD  KYASWYN
Sbjct: 8   MAVFIGILLFSINFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQKYASWYN 67

Query: 61  TVYPCKSLRNAKHSINGNEVRNIFVDNTSQKIKGDKDHHIVDNTSLQKITGDEDHHIIVD 120
           TVYPCKSLR AKHSIN ++V N F  NTSQ +KGDKD HIVDNTS Q+I GD+DHH IVD
Sbjct: 68  TVYPCKSLRKAKHSINRDKVGNTFDVNTSQNVKGDKDPHIVDNTS-QEIKGDKDHH-IVD 127

Query: 121 STSQEIKGEKDYHL-ILPQPSIV 143
           + SQEIKG+KD+HL ILPQPSIV
Sbjct: 128 TISQEIKGDKDHHLIILPQPSIV 148

[Close]

BLAST of MELO3C012517 vs. NCBI nr
Match: gi|700189126|gb|KGN44359.1| (hypothetical protein Csa_7G269050 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 3.4e-52
Identity = 107/143 (74.83%), Postives = 122/143 (85.31%), Query Frame = 1


Query: 1   MAVFMGILLFSMNFVEIAIAIRTIKRRPFTDNAKVICGPPKRPIDYELDDDVHKYASWYN 60
           MAVF+GILLFS+NFVEIA A R IKRR + DN KV+CGPP+R ID+ELDDD  KYASWYN
Sbjct: 8   MAVFIGILLFSINFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQKYASWYN 67

Query: 61  TVYPCKSLRNAKHSINGNEVRNIFVDNTSQKIKGDKDHHIVDNTSLQKITGDEDHHIIVD 120
           TVYPCKSLR AKHSING++V N F  NTSQ +KGDKD HIVDNTS Q+I GD+DHH IVD
Sbjct: 68  TVYPCKSLRKAKHSINGDKVGNTFDVNTSQNVKGDKDPHIVDNTS-QEIKGDKDHH-IVD 127

Query: 121 STSQEIKGEKDYHL-ILPQPSIV 143
           + SQEIKG+KD+HL ILPQPS+V
Sbjct: 128 TISQEIKGDKDHHLIILPQPSMV 148

[Close]

BLAST of MELO3C012517 vs. NCBI nr
Match: gi|700189127|gb|KGN44360.1| (hypothetical protein Csa_7G270050 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 1.3e-51
Identity = 107/143 (74.83%), Postives = 121/143 (84.62%), Query Frame = 1


Query: 1   MAVFMGILLFSMNFVEIAIAIRTIKRRPFTDNAKVICGPPKRPIDYELDDDVHKYASWYN 60
           MAVF+GILLFS+NFVEIA A R IKRR + DN KV+CGPP+R ID+ELDDD  KYASWYN
Sbjct: 8   MAVFIGILLFSINFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQKYASWYN 67

Query: 61  TVYPCKSLRNAKHSINGNEVRNIFVDNTSQKIKGDKDHHIVDNTSLQKITGDEDHHIIVD 120
           TVYPCKSLR AKHSIN ++V N F  NTSQ +KGDKD HIVDNTS Q+I GD+DHH IVD
Sbjct: 68  TVYPCKSLRKAKHSINRDKVGNTFDVNTSQNVKGDKDPHIVDNTS-QEIKGDKDHH-IVD 127

Query: 121 STSQEIKGEKDYHL-ILPQPSIV 143
           + SQEIKG+KD+HL ILPQPSIV
Sbjct: 128 TISQEIKGDKDHHLIILPQPSIV 148

The following BLAST results are available for this feature:

BLAST of MELO3C012517 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K605_CUCSA	2.4e-52	74.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G269050 PE=4 SV=1	[more]
A0A0A0K3T5_CUCSA	9.1e-52	74.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G270050 PE=4 SV=1	[more]

BLAST of MELO3C012517 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189126\|gb\|KGN44359.1\|	3.4e-52	74.83	hypothetical protein Csa_7G269050 [Cucumis sativus]	[more]
gi\|700189127\|gb\|KGN44360.1\|	1.3e-51	74.83	hypothetical protein Csa_7G270050 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012517T1	MELO3C012517T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C012517	Csa7G269050	Cucumber (Chinese Long) v2	cumeB533
MELO3C012517	CSPI07G11670	Wild cucumber (PI 183967)	cpimeB541
MELO3C012517	CsaV3_7G023610	Cucumber (Chinese Long) v3	cucmeB551

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012517	Cucumber (Gy14) v2	cgybmeB471
MELO3C012517	Silver-seed gourd	carmeB0180
MELO3C012517	Silver-seed gourd	carmeB0321
MELO3C012517	Silver-seed gourd	carmeB0880
MELO3C012517	Cucumber (Chinese Long) v3	cucmeB106
MELO3C012517	Watermelon (97103) v2	mewmbB176
MELO3C012517	Watermelon (97103) v2	mewmbB179
MELO3C012517	Wax gourd	mewgoB223
MELO3C012517	Wax gourd	mewgoB231
MELO3C012517	Cucumber (Gy14) v1	cgymeB150
MELO3C012517	Cucumber (Gy14) v1	cgymeB408
MELO3C012517	Cucurbita maxima (Rimu)	cmameB093
MELO3C012517	Cucurbita maxima (Rimu)	cmameB462
MELO3C012517	Cucurbita maxima (Rimu)	cmameB564
MELO3C012517	Cucurbita moschata (Rifu)	cmomeB086
MELO3C012517	Cucurbita moschata (Rifu)	cmomeB453
MELO3C012517	Cucurbita moschata (Rifu)	cmomeB503
MELO3C012517	Cucurbita moschata (Rifu)	cmomeB552
MELO3C012517	Wild cucumber (PI 183967)	cpimeB102
MELO3C012517	Cucumber (Chinese Long) v2	cumeB102
MELO3C012517	Watermelon (Charleston Gray)	mewcgB190
MELO3C012517	Watermelon (Charleston Gray)	mewcgB196
MELO3C012517	Watermelon (97103) v1	mewmB239
MELO3C012517	Watermelon (97103) v1	mewmB252
MELO3C012517	Cucurbita pepo (Zucchini)	cpemeB224
MELO3C012517	Cucurbita pepo (Zucchini)	cpemeB272
MELO3C012517	Cucurbita pepo (Zucchini)	cpemeB605
MELO3C012517	Cucurbita pepo (Zucchini)	cpemeB685
MELO3C012517	Bottle gourd (USVL1VR-Ls)	lsimeB064
MELO3C012517	Bottle gourd (USVL1VR-Ls)	lsimeB096