MELO3C012512 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012512
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Myb family transcription factor family protein
Location	chr1 : 17849289 .. 17849558 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATGTCCTCACATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACGTTTGAAAAGGCTTTGGCTGAGTATGATCAAGACACTCCTGAAAGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTTCATGATGTCAAACATATCGAGTCTGGCAATGTCCCTTTTCCCTATCCAACAACCTCGAGCGATGATGATTTGCCGAGGAAAAGAGGTGTCGTTTGA

mRNA sequence

ATGGCTTCAATGTCCTCACATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACGTTTGAAAAGGCTTTGGCTGAGTATGATCAAGACACTCCTGAAAGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTTCATGATGTCAAACATATCGAGTCTGGCAATGTCCCTTTTCCCTATCCAACAACCTCGAGCGATGATGATTTGCCGAGGAAAAGAGGTGTCGTTTGA

Coding sequence (CDS)

ATGGCTTCAATGTCCTCACATGGCTCAAATGCATGGACTAAAATGCAAAACAAGACGTTTGAAAAGGCTTTGGCTGAGTATGATCAAGACACTCCTGAAAGATGGGTGAATGTTGCTAAGGCTGTTGGTGAAAAAACTGAAGAGGAAGTCAAGAGGCATTACCAACTTCTCCTTCATGATGTCAAACATATCGAGTCTGGCAATGTCCCTTTTCCCTATCCAACAACCTCGAGCGATGATGATTTGCCGAGGAAAAGAGGTGTCGTTTGA

Protein sequence

MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVKHIESGNVPFPYPTTSSDDDLPRKRGVV*

Homology

[Close]

BLAST of MELO3C012512 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.0e-23
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 1


Query: 3  SMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVK 62
          SMSS+GS +WT  QNK FE+ALA YDQDTP+RW NVA+AVG KT EE KR Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGNVPFP-YPTTSSDDDLPRKR 87
           IE+G+VPFP Y TT+ + +  R R
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGRLR 89

[Close]

BLAST of MELO3C012512 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-22
Identity = 50/76 (65.79%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 2  ASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDV 61
          +SMSS  S +WT  QNK FE+ALA YDQDTP RW NVAK VG KT EEVKRHY+LL+ D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGNVPFPYPTTS 78
            IE+G+VPFP   TS
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]

BLAST of MELO3C012512 vs. Swiss-Prot
Match: RADL3_ARATH (Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 8.2e-20
Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S   S +WT+ +NK FE+ALA YDQDTP+RW NVA+AVG K+ EEV+RHY+LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKHIESGNVPFP 73
          V  IESG  P P
Sbjct: 61 VNDIESGRYPHP 72

[Close]

BLAST of MELO3C012512 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.4e-19
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 1


Query: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS    G   W+  +NK FE+ALA YD+DTP+RW NVA+AV  +T EEVK+HY++L+ D
Sbjct: 1  MASTRGSG-RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 60

Query: 61 VKHIESGNVPFP-YPTTSSDDDLPRKR 87
          +K+IESG VPFP Y TT  +     KR
Sbjct: 61 IKYIESGKVPFPNYRTTGGNMKTDEKR 86

[Close]

BLAST of MELO3C012512 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.1e-19
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S   S++WT  QNK FE+ALA YD+DTP+RW NVAKAVG K+ EEVKRHY +L+ D
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFP 73
          + +IE   VP P
Sbjct: 61 LMNIEQDLVPLP 72

[Close]

BLAST of MELO3C012512 vs. TrEMBL
Match: A0A0A0K3K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.7e-27
Identity = 58/73 (79.45%), Postives = 66/73 (90.41%), Query Frame = 1


Query: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMS+HGS+AWT ++NK FEKALA YD+DTPERW+NVAKA+G KTEEEVKRHYQLLL D
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPY 74
          V HIESG +PFPY
Sbjct: 61 VNHIESGQIPFPY 73

[Close]

BLAST of MELO3C012512 vs. TrEMBL
Match: A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 8.3e-27
Identity = 58/79 (73.42%), Postives = 68/79 (86.08%), Query Frame = 1


Query: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS+S+HGS  WT  QNK FE+ALA YD+DTP+RW+NVAKA+G KTEEEVKRHYQLLL D
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPYPTTSSD 80
          VKHIESG VPFPY ++ S+
Sbjct: 61 VKHIESGKVPFPYRSSRSN 79

[Close]

BLAST of MELO3C012512 vs. TrEMBL
Match: A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 59/76 (77.63%), Postives = 63/76 (82.89%), Query Frame = 1


Query: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSSHGS  WT  QNK FEKALA YDQDTP+RW+NVAKAVG KT EEVKRHY LL+ D
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKHIESGNVPFPYPTT 77
          VK IESG VPFPY T+
Sbjct: 61 VKFIESGQVPFPYRTS 76

[Close]

BLAST of MELO3C012512 vs. TrEMBL
Match: B9HRM8_POPTR (Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0009s11930g PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-23
Identity = 55/79 (69.62%), Postives = 66/79 (83.54%), Query Frame = 1


Query: 2  ASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDV 61
          +SMSS GS +WT  QNK FE+ALA YD+DTP+RW NVA+AVG KT EEVKRHY+LL+ DV
Sbjct: 4  SSMSSRGSGSWTVQQNKAFERALAVYDRDTPDRWYNVARAVGGKTAEEVKRHYELLVEDV 63

Query: 62 KHIESGNVPFP-YPTTSSD 80
          KHIESG+VPFP Y TT ++
Sbjct: 64 KHIESGHVPFPNYRTTGAN 82

[Close]

BLAST of MELO3C012512 vs. TrEMBL
Match: A0A061E040_THECC (Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_006883 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-23
Identity = 55/77 (71.43%), Postives = 63/77 (81.82%), Query Frame = 1


Query: 2  ASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDV 61
          +SMSS GS +WT  QNK FE+ALA YD+DTP+RW NVAKAVG KT EEVKRHY+LL+ DV
Sbjct: 4  SSMSSRGSGSWTAKQNKDFERALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLVQDV 63

Query: 62 KHIESGNVPFPYPTTSS 79
          KHIESG VPFP   TS+
Sbjct: 64 KHIESGQVPFPNYRTSA 80

[Close]

BLAST of MELO3C012512 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 107.5 bits (267), Expect = 4.5e-24
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 1


Query: 3  SMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDVK 62
          SMSS+GS +WT  QNK FE+ALA YDQDTP+RW NVA+AVG KT EE KR Y LL+ D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 HIESGNVPFP-YPTTSSDDDLPRKR 87
           IE+G+VPFP Y TT+ + +  R R
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGRLR 89

[Close]

BLAST of MELO3C012512 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 106.3 bits (264), Expect = 1.0e-23
Identity = 50/76 (65.79%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 2  ASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHDV 61
          +SMSS  S +WT  QNK FE+ALA YDQDTP RW NVAK VG KT EEVKRHY+LL+ D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KHIESGNVPFPYPTTS 78
            IE+G+VPFP   TS
Sbjct: 64 NSIENGHVPFPNYRTS 79

[Close]

BLAST of MELO3C012512 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 95.1 bits (235), Expect = 2.3e-20
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S   S++WT  QNK FE+ALA YD+DTP+RW NVAKAVG K+ EEVKRHY +L+ D
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFP 73
          + +IE   VP P
Sbjct: 61 LMNIEQDLVPLP 72

[Close]

BLAST of MELO3C012512 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 94.7 bits (234), Expect = 3.0e-20
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 1


Query: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS S    + WT  QNK FE+ALA YD+DTP+RW NVAKAVG KT EEVKRHY +L+ D
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKHIESGNVPFP-YPTTSSD 80
          + +IE+G VP P Y T  S+
Sbjct: 61 LINIETGRVPLPNYKTFESN 80

[Close]

BLAST of MELO3C012512 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 87.4 bits (215), Expect = 4.8e-18
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS SS  +++WT  ++K FE ALA++D+DTP+RW  +A+AVG K+ EEVKRHY+LLL D
Sbjct: 1  MAS-SSMSTSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRD 60

Query: 61 VKHIESGNVPFP 73
          V  IESG  P P
Sbjct: 61 VNDIESGRYPQP 71

[Close]

BLAST of MELO3C012512 vs. NCBI nr
Match: gi|659092931|ref|XP_008447294.1| (PREDICTED: protein RADIALIS-like 2 [Cucumis melo])

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPTTSSDDDLPRKRGVV 90
          VKHIESGNVPFPYPTTSSDDDLPRKRGVV
Sbjct: 61 VKHIESGNVPFPYPTTSSDDDLPRKRGVV 89

[Close]

BLAST of MELO3C012512 vs. NCBI nr
Match: gi|778726246|ref|XP_011659078.1| (PREDICTED: protein RADIALIS-like 2 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-41
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1


Query: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMSSHGSNAWTKMQNKTFE ALAEYDQDTPERWVNVAKAVGEKTEEEVK HYQLLLHD
Sbjct: 1  MASMSSHGSNAWTKMQNKTFEMALAEYDQDTPERWVNVAKAVGEKTEEEVKMHYQLLLHD 60

Query: 61 VKHIESGNVPFPYPTTSSDDDLPRKRG 88
          VKHIESGNVPFPYPTTSS+DDLPRKRG
Sbjct: 61 VKHIESGNVPFPYPTTSSNDDLPRKRG 87

[Close]

BLAST of MELO3C012512 vs. NCBI nr
Match: gi|659092351|ref|XP_008447025.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 60/76 (78.95%), Postives = 66/76 (86.84%), Query Frame = 1


Query: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMS+HGS  WT  QNK FEKALA YD+DTP+RW+NVAKA+G KTEEEVKRHYQLLL D
Sbjct: 1  MASMSAHGSGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPYPTT 77
          VKHIESG VPFPY T+
Sbjct: 61 VKHIESGKVPFPYRTS 76

[Close]

BLAST of MELO3C012512 vs. NCBI nr
Match: gi|778725452|ref|XP_011658943.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 5.3e-27
Identity = 58/73 (79.45%), Postives = 66/73 (90.41%), Query Frame = 1


Query: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MASMS+HGS+AWT ++NK FEKALA YD+DTPERW+NVAKA+G KTEEEVKRHYQLLL D
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPY 74
          V HIESG +PFPY
Sbjct: 61 VNHIESGQIPFPY 73

[Close]

BLAST of MELO3C012512 vs. NCBI nr
Match: gi|449466805|ref|XP_004151116.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-26
Identity = 58/79 (73.42%), Postives = 68/79 (86.08%), Query Frame = 1


Query: 1  MASMSSHGSNAWTKMQNKTFEKALAEYDQDTPERWVNVAKAVGEKTEEEVKRHYQLLLHD 60
          MAS+S+HGS  WT  QNK FE+ALA YD+DTP+RW+NVAKA+G KTEEEVKRHYQLLL D
Sbjct: 1  MASLSAHGSGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VKHIESGNVPFPYPTTSSD 80
          VKHIESG VPFPY ++ S+
Sbjct: 61 VKHIESGKVPFPYRSSRSN 79

The following BLAST results are available for this feature:

BLAST of MELO3C012512 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RADL2_ARATH	8.0e-23	61.18	Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1	[more]
RADL1_ARATH	1.8e-22	65.79	Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1	[more]
RADL3_ARATH	8.2e-20	62.50	Protein RADIALIS-like 3 OS=Arabidopsis thaliana GN=RL3 PE=2 SV=1	[more]
RAD_ANTMA	2.4e-19	54.02	Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1	[more]
RADL5_ARATH	4.1e-19	61.11	Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1	[more]

BLAST of MELO3C012512 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3K0_CUCSA	3.7e-27	79.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1	[more]
A0A0A0K344_CUCSA	8.3e-27	73.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1	[more]
A0A0A0K348_CUCSA	1.2e-25	77.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1	[more]
B9HRM8_POPTR	1.9e-23	69.62	Myb family transcription factor family protein OS=Populus trichocarpa GN=POPTR_0...	[more]
A0A061E040_THECC	1.9e-23	71.43	Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_006883 PE=4 SV=1	[more]

BLAST of MELO3C012512 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21650.1	4.5e-24	61.18	Homeodomain-like superfamily protein	[more]
AT4G39250.1	1.0e-23	65.79	RAD-like 1	[more]
AT1G19510.1	2.3e-20	61.11	RAD-like 5	[more]
AT1G75250.1	3.0e-20	60.00	RAD-like 6	[more]
AT2G18328.1	4.8e-18	58.33	RAD-like 4	[more]

BLAST of MELO3C012512 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092931\|ref\|XP_008447294.1\|	1.3e-44	100.00	PREDICTED: protein RADIALIS-like 2 [Cucumis melo]	[more]
gi\|778726246\|ref\|XP_011659078.1\|	1.0e-41	96.55	PREDICTED: protein RADIALIS-like 2 [Cucumis sativus]	[more]
gi\|659092351\|ref\|XP_008447025.1\|	1.8e-27	78.95	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
gi\|778725452\|ref\|XP_011658943.1\|	5.3e-27	79.45	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]
gi\|449466805\|ref\|XP_004151116.1\|	1.2e-26	73.42	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017877	Myb-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012512T1	MELO3C012512T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 10..57 score: 4.
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 score: 2.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 11..64 score: 8.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 10..66 score: 9.36
IPR017877	Myb-like domain	PROFILE	PS50090	MYB_LIKE	coord: 4..58 score:
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 9..71 score: 2.8
None	No IPR available	PANTHER	PTHR24078:SF177	PROTEIN DNJ-23-RELATED	coord: 9..71 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012512	Silver-seed gourd	carmeB0180
MELO3C012512	Silver-seed gourd	carmeB0321
MELO3C012512	Silver-seed gourd	carmeB0880
MELO3C012512	Cucumber (Chinese Long) v3	cucmeB106
MELO3C012512	Cucumber (Chinese Long) v3	cucmeB551
MELO3C012512	Watermelon (97103) v2	mewmbB176
MELO3C012512	Watermelon (97103) v2	mewmbB179
MELO3C012512	Wax gourd	mewgoB223
MELO3C012512	Wax gourd	mewgoB231
MELO3C012512	Melon (DHL92) v3.5.1	memeB042
MELO3C012512	Cucumber (Gy14) v1	cgymeB408
MELO3C012512	Cucurbita maxima (Rimu)	cmameB093
MELO3C012512	Cucurbita maxima (Rimu)	cmameB462
MELO3C012512	Cucurbita moschata (Rifu)	cmomeB086
MELO3C012512	Cucurbita moschata (Rifu)	cmomeB453
MELO3C012512	Cucurbita moschata (Rifu)	cmomeB503
MELO3C012512	Cucurbita moschata (Rifu)	cmomeB552
MELO3C012512	Wild cucumber (PI 183967)	cpimeB102
MELO3C012512	Wild cucumber (PI 183967)	cpimeB541
MELO3C012512	Cucumber (Chinese Long) v2	cumeB102
MELO3C012512	Watermelon (Charleston Gray)	mewcgB190
MELO3C012512	Watermelon (Charleston Gray)	mewcgB196
MELO3C012512	Watermelon (97103) v1	mewmB239
MELO3C012512	Watermelon (97103) v1	mewmB252
MELO3C012512	Cucurbita pepo (Zucchini)	cpemeB224
MELO3C012512	Cucurbita pepo (Zucchini)	cpemeB272
MELO3C012512	Cucurbita pepo (Zucchini)	cpemeB605
MELO3C012512	Bottle gourd (USVL1VR-Ls)	lsimeB064
MELO3C012512	Bottle gourd (USVL1VR-Ls)	lsimeB096
MELO3C012512	Cucumber (Gy14) v2	cgybmeB088
MELO3C012512	Cucumber (Gy14) v2	cgybmeB471