MELO3C012432.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012432.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	pollen-specific leucine-rich repeat extensin-like protein 1
Location	chr10 : 525756 .. 526790 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGAACGATATATGCTCAAATGTTAAGAACCAAACAAGACTTTACCCAAGAAAATATGTCACGAAATTAAACATTGTTATTAACGTTCAAACTTCCATAAGTTTTCTTCACAAAATAATCTTCAATTAGGAACAAACAAAACAAGACAGCCATAAAATTAAAAGGCTTCTCACAATAATCTTCAATGTGAGAAGTGTATATATGTATATGTATGATTGTATATTTGTGCACCTTAATCGTACGAAGGACTCATGGCTAAAAGGTTTAAAATTTTTGCTTTTGCTTTTACTTTTATTTTTGTGTTTCTTCATGTCACAAATTTGACTTTTGCTCAAGATGCATCTCCTCCTCCACCACCATCCAACCCAACTGAAACTCCACCTCCACCCCCACCATCCAATACCACCGACACTCCGCCGCCGCCACCCCCATCCAACATAACTGACACTCCGCCTCCACCGCCATCAAATACCACTGACACTCCGCCTCCACCGCCATCAAACACCACTGACACTCCGCCTCCCCCGCCACCATCCAACACTACCAACACTCCTCCACCACCTCCACCATCGAACACAACTGATACTCCACCTCCACCGCCACCATCGAACACAACTGACACTCCGCCTCCACCGCCACCGTCGAACACCACTGATACACCACCACCGCCACCACCATCGAACACCACTGACACTCCTCCACCACCGCCATCCAACACGACCGACACTCCCCCACCACCATCTAATACAACCAACTCATCTCCACCACCACCACCACCACCAAATTCCACCATTATCTTACCACCTGCACCGCCGCCTAACATGGGTTCATCTCCACCACCTTCGAGCGAAGCATTGAAGGAAAAGGGTGTCGGAGGTTCAAAAGGATTGAGCGGGGGTCAAAAGGCAGGGATTGCATTTGGAGTGATCGCAGGAGTAGGTTTGTTGGGATTTGTAGGATTAATTTGCATCAAACGTCGTAGTAATGCAAGAAGAAGCCGTTATGGATATGCTGCAAGAGACTCAATCCTTTAA

mRNA sequence

TATGAACGATATATGCTCAAATGTTAAGAACCAAACAAGACTTTACCCAAGAAAATATGTCACGAAATTAAACATTGTTATTAACGTTCAAACTTCCATAAGTTTTCTTCACAAAATAATCTTCAATTAGGAACAAACAAAACAAGACAGCCATAAAATTAAAAGGCTTCTCACAATAATCTTCAATGTGAGAAGTGTATATATGTATATGTATGATTGTATATTTGTGCACCTTAATCGTACGAAGGACTCATGGCTAAAAGGTTTAAAATTTTTGCTTTTGCTTTTACTTTTATTTTTGTGTTTCTTCATGTCACAAATTTGACTTTTGCTCAAGATGCATCTCCTCCTCCACCACCATCCAACCCAACTGAAACTCCACCTCCACCCCCACCATCCAATACCACCGACACTCCGCCGCCGCCACCCCCATCCAACATAACTGACACTCCGCCTCCACCGCCATCAAATACCACTGACACTCCGCCTCCACCGCCATCAAACACCACTGACACTCCGCCTCCCCCGCCACCATCCAACACTACCAACACTCCTCCACCACCTCCACCATCGAACACAACTGATACTCCACCTCCACCGCCACCATCGAACACAACTGACACTCCGCCTCCACCGCCACCGTCGAACACCACTGATACACCACCACCGCCACCACCATCGAACACCACTGACACTCCTCCACCACCGCCATCCAACACGACCGACACTCCCCCACCACCATCTAATACAACCAACTCATCTCCACCACCACCACCACCACCAAATTCCACCATTATCTTACCACCTGCACCGCCGCCTAACATGGGTTCATCTCCACCACCTTCGAGCGAAGCATTGAAGGAAAAGGGTGTCGGAGGTTCAAAAGGATTGAGCGGGGGTCAAAAGGCAGGGATTGCATTTGGAGTGATCGCAGGAGTAGGTTTGTTGGGATTTGTAGGATTAATTTGCATCAAACGTCGTAGTAATGCAAGAAGAAGCCGTTATGGATATGCTGCAAGAGACTCAATCCTTTAA

Coding sequence (CDS)

ATGGCTAAAAGGTTTAAAATTTTTGCTTTTGCTTTTACTTTTATTTTTGTGTTTCTTCATGTCACAAATTTGACTTTTGCTCAAGATGCATCTCCTCCTCCACCACCATCCAACCCAACTGAAACTCCACCTCCACCCCCACCATCCAATACCACCGACACTCCGCCGCCGCCACCCCCATCCAACATAACTGACACTCCGCCTCCACCGCCATCAAATACCACTGACACTCCGCCTCCACCGCCATCAAACACCACTGACACTCCGCCTCCCCCGCCACCATCCAACACTACCAACACTCCTCCACCACCTCCACCATCGAACACAACTGATACTCCACCTCCACCGCCACCATCGAACACAACTGACACTCCGCCTCCACCGCCACCGTCGAACACCACTGATACACCACCACCGCCACCACCATCGAACACCACTGACACTCCTCCACCACCGCCATCCAACACGACCGACACTCCCCCACCACCATCTAATACAACCAACTCATCTCCACCACCACCACCACCACCAAATTCCACCATTATCTTACCACCTGCACCGCCGCCTAACATGGGTTCATCTCCACCACCTTCGAGCGAAGCATTGAAGGAAAAGGGTGTCGGAGGTTCAAAAGGATTGAGCGGGGGTCAAAAGGCAGGGATTGCATTTGGAGTGATCGCAGGAGTAGGTTTGTTGGGATTTGTAGGATTAATTTGCATCAAACGTCGTAGTAATGCAAGAAGAAGCCGTTATGGATATGCTGCAAGAGACTCAATCCTTTAA

Protein sequence

MAKRFKIFAFAFTFIFVFLHVTNLTFAQDASPPPPPSNPTETPPPPPPSNTTDTPPPPPPSNITDTPPPPPSNTTDTPPPPPSNTTDTPPPPPPSNTTNTPPPPPPSNTTDTPPPPPPSNTTDTPPPPPPSNTTDTPPPPPPSNTTDTPPPPPSNTTDTPPPPSNTTNSSPPPPPPPNSTIILPPAPPPNMGSSPPPSSEALKEKGVGGSKGLSGGQKAGIAFGVIAGVGLLGFVGLICIKRRSNARRSRYGYAARDSIL

Homology

[Close]

BLAST of MELO3C012432.2 vs. NCBI nr
Match: XP_011655886.1 (PREDICTED: neural Wiskott-Aldrich syndrome protein-like [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 7.1e-20
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 202 LKEKGVGGSKGLSGGQKAGIAFGVIAGVGLLGFVGLICIKRRSNARRSRYGYAARDSIL 261
           LKEKG GGSKGLSGGQKAGIAFGVI GVGLLGFVGLICIKRRSNARRS YGYAARDSIL
Sbjct: 138 LKEKGGGGSKGLSGGQKAGIAFGVIIGVGLLGFVGLICIKRRSNARRSSYGYAARDSIL 196

[Close]

BLAST of MELO3C012432.2 vs. NCBI nr
Match: XP_022139212.1 (formin-like protein 20 [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 9.0e-15
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 202 LKEKGVGGSKGLSGGQKAGIAFGVIAGVGLLGFVGLICIKRRSNARRSRYGYAARDSIL 261
           L EKG   SKGLSGGQKAGIA GVIAG GLLGFVGLIC+KRRSN+ RS YGY ARD++L
Sbjct: 273 LNEKGGADSKGLSGGQKAGIALGVIAGAGLLGFVGLICMKRRSNSMRSHYGYGARDAML 331

[Close]

BLAST of MELO3C012432.2 vs. NCBI nr
Match: GAU20532.1 (hypothetical protein TSUD_130900 [Trifolium subterraneum])

HSP 1 Score: 65.1 bits (157), Expect = 4.1e-07
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 206 GVGGSKGLSGGQKAGIAFGVIAGVGLLGFVGLICIKRRSNARRSRYGYAARD 258
           G GG  GLSGGQKAGI  G + G  LLGF G++C KR+SN RR+RY  AAR+
Sbjct: 85  GRGGPSGLSGGQKAGIVIGTLLGAALLGFFGMVCWKRQSNIRRNRYSNAARN 136

[Close]

BLAST of MELO3C012432.2 vs. NCBI nr
Match: PNX90729.1 (hypothetical protein L195_g046854 [Trifolium pratense])

HSP 1 Score: 64.7 bits (156), Expect = 5.3e-07
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 206 GVGGSKGLSGGQKAGIAFGVIAGVGLLGFVGLICIKRRSNARRSRYGYAARD 258
           G GG  GLSGGQKAGI  G + G  LLGF G++C KR+SN RR+RY  AAR+
Sbjct: 57  GRGGPAGLSGGQKAGIVIGTLLGAALLGFFGMVCWKRQSNIRRNRYSNAARN 108

[Close]

BLAST of MELO3C012432.2 vs. NCBI nr
Match: XP_003599945.1 (vegetative cell wall protein gp1 [Medicago truncatula] >AES70196.1 transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 63.9 bits (154), Expect = 9.1e-07
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 209 GSKGLSGGQKAGIAFGVIAGVGLLGFVGLICIKRRSNARRSRYGYAARD 258
           GS GLSGGQKAGI  G + G  +LGF+G++C KRR N RR+RY  AAR+
Sbjct: 93  GSSGLSGGQKAGIVIGTLLGAAILGFIGMVCWKRRVNIRRNRYSDAARN 141

[Close]

BLAST of MELO3C012432.2 vs. TAIR10
Match: AT3G45230.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 58.2 bits (139), Expect = 9.0e-09
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 208 GGSKGLSGGQKAGIAFGVIAGVGLLGFVGLICIKRRSNARRSRYGYAARD 258
           G   G+SGG+K G+AFG IA V ++G  G +  KR+ N RRSRYGYAAR+
Sbjct: 124 GSGGGMSGGKKVGVAFGAIAAVCVVGVAGFVYKKRQENIRRSRYGYAARE 173

[Close]

BLAST of MELO3C012432.2 vs. TAIR10
Match: AT2G28440.1 (proline-rich family protein)

HSP 1 Score: 42.0 bits (97), Expect = 6.7e-04
Identity = 24/53 (45.28%), Postives = 29/53 (54.72%), Query Frame = 0


Query: 208 GGSKGLSGGQKAGIAFGVIAGVGLLGFVGLICIKRRSNARRSRYGYAARDSIL 261
           G   G+SG +KAGIA G I GVG +    L+  KRR N  R+RY Y      L
Sbjct: 216 GEDYGMSGLEKAGIAIGTILGVGAIVIGALVYKKRRDNMTRARYTYFTEGEFL 268

[Close]

BLAST of MELO3C012432.2 vs. TrEMBL
Match: tr|A0A2K3MJ07|A0A2K3MJ07_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g046854 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.5e-07
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 206 GVGGSKGLSGGQKAGIAFGVIAGVGLLGFVGLICIKRRSNARRSRYGYAARD 258
           G GG  GLSGGQKAGI  G + G  LLGF G++C KR+SN RR+RY  AAR+
Sbjct: 57  GRGGPAGLSGGQKAGIVIGTLLGAALLGFFGMVCWKRQSNIRRNRYSNAARN 108

[Close]

BLAST of MELO3C012432.2 vs. TrEMBL
Match: tr|G7J199|G7J199_MEDTR (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=11430843 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.0e-07
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 209 GSKGLSGGQKAGIAFGVIAGVGLLGFVGLICIKRRSNARRSRYGYAARD 258
           GS GLSGGQKAGI  G + G  +LGF+G++C KRR N RR+RY  AAR+
Sbjct: 93  GSSGLSGGQKAGIVIGTLLGAAILGFIGMVCWKRRVNIRRNRYSDAARN 141

[Close]

BLAST of MELO3C012432.2 vs. TrEMBL
Match: tr|A0A103YIK5|A0A103YIK5_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_011888 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-06
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 212 GLSGGQKAGIAFGVIAGVGLLGFVGLICIKRRSNARRSRYGYAARDSIL 261
           GLSGGQKAGI FGV+AG GL+GF  ++ +KR+SN RR+R+G  AR S L
Sbjct: 90  GLSGGQKAGIVFGVLAGAGLIGFATVVFMKRKSNIRRARFGVLARRSQL 138

[Close]

BLAST of MELO3C012432.2 vs. TrEMBL
Match: tr|A0A2R6PQ47|A0A2R6PQ47_ACTCH (Surface protein bspA-like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc25945 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 210 SKGLSGGQKAGIAFGVIAGVGLLGFVGLICIKRRSNARRSRYGYAARDSIL 261
           S G+ GG+KAGI FGVIAG  L+GF G++  KR+ N RRS+YGYAAR   L
Sbjct: 108 SGGMKGGEKAGIVFGVIAGACLVGFGGMVYKKRQDNIRRSQYGYAARTQFL 158

[Close]

BLAST of MELO3C012432.2 vs. TrEMBL
Match: tr|A0A1J3GW23|A0A1J3GW23_NOCCA (Uncharacterized protein OS=Noccaea caerulescens OX=107243 GN=GA_TR19593_c0_g1_i1_g.64744 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-06
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 202 LKEKGVGGSKGLSGGQKAGIAFGVIAGVGLLGFVGLICIKRRSNARRSRYGYAARD 258
           ++EK   G  G+SGG KAG+AFG IA V ++G  G +  KR+ N RRSRYGYAAR+
Sbjct: 119 VEEKKPSGGDGMSGGTKAGVAFGTIAAVCVVGVAGFVYKKRQDNIRRSRYGYAARE 174

The following BLAST results are available for this feature:

BLAST of MELO3C012432.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655886.1	7.1e-20	94.92	PREDICTED: neural Wiskott-Aldrich syndrome protein-like [Cucumis sativus]	[more]
XP_022139212.1	9.0e-15	77.97	formin-like protein 20 [Momordica charantia]	[more]
GAU20532.1	4.1e-07	61.54	hypothetical protein TSUD_130900 [Trifolium subterraneum]	[more]
PNX90729.1	5.3e-07	61.54	hypothetical protein L195_g046854 [Trifolium pratense]	[more]
XP_003599945.1	9.1e-07	61.22	vegetative cell wall protein gp1 [Medicago truncatula] >AES70196.1 transmembrane...	[more]

BLAST of MELO3C012432.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G45230.1	9.0e-09	56.00	hydroxyproline-rich glycoprotein family protein	[more]
AT2G28440.1	6.7e-04	45.28	proline-rich family protein	[more]

BLAST of MELO3C012432.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C012432.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2K3MJ07\|A0A2K3MJ07_TRIPR	3.5e-07	61.54	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g046854 PE=4 SV=1	[more]
tr\|G7J199\|G7J199_MEDTR	6.0e-07	61.22	Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=11430843 PE=4 ...	[more]
tr\|A0A103YIK5\|A0A103YIK5_CYNCS	1.0e-06	63.27	Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_011...	[more]
tr\|A0A2R6PQ47\|A0A2R6PQ47_ACTCH	1.3e-06	60.78	Surface protein bspA-like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CE...	[more]
tr\|A0A1J3GW23\|A0A1J3GW23_NOCCA	1.7e-06	55.36	Uncharacterized protein OS=Noccaea caerulescens OX=107243 GN=GA_TR19593_c0_g1_i1...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012432.2.1	MELO3C012432.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 58..70 score: 44.62 coord: 36..52 score: 41.18 coord: 22..34 score: 30.77 coord: 71..92 score: 42.73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..212

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012432.2	Cucumber (Gy14) v2	cgybmedB144
MELO3C012432.2	Cucumber (Gy14) v2	cgybmedB318
MELO3C012432.2	Cucumber (Gy14) v2	cgybmedB363
MELO3C012432.2	Cucumber (Gy14) v1	cgymedB223
MELO3C012432.2	Cucumber (Gy14) v1	cgymedB502
MELO3C012432.2	Cucumber (Gy14) v1	cgymedB508
MELO3C012432.2	Cucurbita maxima (Rimu)	cmamedB297
MELO3C012432.2	Cucurbita maxima (Rimu)	cmamedB408
MELO3C012432.2	Cucurbita maxima (Rimu)	cmamedB749
MELO3C012432.2	Cucurbita maxima (Rimu)	cmamedB726
MELO3C012432.2	Cucurbita moschata (Rifu)	cmomedB286
MELO3C012432.2	Cucurbita moschata (Rifu)	cmomedB395
MELO3C012432.2	Cucurbita moschata (Rifu)	cmomedB720
MELO3C012432.2	Cucurbita moschata (Rifu)	cmomedB742
MELO3C012432.2	Cucurbita moschata (Rifu)	cmomedB837
MELO3C012432.2	Cucurbita pepo (Zucchini)	cpemedB028
MELO3C012432.2	Cucurbita pepo (Zucchini)	cpemedB190
MELO3C012432.2	Cucurbita pepo (Zucchini)	cpemedB423
MELO3C012432.2	Cucurbita pepo (Zucchini)	cpemedB446
MELO3C012432.2	Cucurbita pepo (Zucchini)	cpemedB512
MELO3C012432.2	Wild cucumber (PI 183967)	cpimedB363
MELO3C012432.2	Wild cucumber (PI 183967)	cpimedB409
MELO3C012432.2	Cucumber (Chinese Long) v2	cumedB359
MELO3C012432.2	Cucumber (Chinese Long) v2	cumedB401
MELO3C012432.2	Melon (DHL92) v3.6.1	medmedB028
MELO3C012432.2	Bottle gourd (USVL1VR-Ls)	lsimedB297
MELO3C012432.2	Bottle gourd (USVL1VR-Ls)	lsimedB482
MELO3C012432.2	Watermelon (Charleston Gray)	medwcgB061
MELO3C012432.2	Watermelon (Charleston Gray)	medwcgB069
MELO3C012432.2	Watermelon (97103) v1	medwmB048
MELO3C012432.2	Watermelon (97103) v1	medwmB061
MELO3C012432.2	Watermelon (97103) v1	medwmB069
MELO3C012432.2	Silver-seed gourd	carmedB0274
MELO3C012432.2	Silver-seed gourd	carmedB0495
MELO3C012432.2	Silver-seed gourd	carmedB0696
MELO3C012432.2	Silver-seed gourd	carmedB0846
MELO3C012432.2	Cucumber (Chinese Long) v3	cucmedB375
MELO3C012432.2	Watermelon (97103) v2	medwmbB056
MELO3C012432.2	Watermelon (97103) v2	medwmbB066
MELO3C012432.2	Wax gourd	medwgoB081