MELO3C011566 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C011566
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ
Location	chr3 : 14375426 .. 14375644 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGCAAACCAATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGATTGAAAGATCAATTGGCAAAGATCTTAGAACTGCTCACTACTAGAAGAGGAAAGAGTGTTGCGGGGATTTCATCACAAGTGGAAGTAGATCTGAACCAGGTGCTAGAAGACATGCCTGCATACCCTTCAGGTTTTACTCCCAAAAGTCGTCTAGTCCTTGCATGA

mRNA sequence

ATGGATGAGCAAACCAATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGATTGAAAGATCAATTGGCAAAGATCTTAGAACTGCTCACTACTAGAAGAGGAAAGAGTGTTGCGGGGATTTCATCACAAGTGGAAGTAGATCTGAACCAGGTGCTAGAAGACATGCCTGCATACCCTTCAGGTTTTACTCCCAAAAGTCGTCTAGTCCTTGCATGA

Coding sequence (CDS)

ATGGATGAGCAAACCAATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGATTGAAAGATCAATTGGCAAAGATCTTAGAACTGCTCACTACTAGAAGAGGAAAGAGTGTTGCGGGGATTTCATCACAAGTGGAAGTAGATCTGAACCAGGTGCTAGAAGACATGCCTGCATACCCTTCAGGTTTTACTCCCAAAAGTCGTCTAGTCCTTGCATGA

Protein sequence

MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYPSGFTPKSRLVLA*

Homology

[Close]

BLAST of MELO3C011566 vs. NCBI nr
Match: gi|659093710|ref|XP_008447676.1| (PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-24
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP 60
          MDEQTNDQVQAVRQDVEGLKDQLAKILELLT  RGKSV GISSQVEVDLNQVLEDMPAYP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTIGRGKSVTGISSQVEVDLNQVLEDMPAYP 60

Query: 61 SGFTPK 67
           GFTP+
Sbjct: 61 PGFTPQ 66

[Close]

BLAST of MELO3C011566 vs. NCBI nr
Match: gi|659130442|ref|XP_008465174.1| (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 2.6e-24
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP 60
          MDEQTNDQVQAVRQDVEGLKDQLAKILEL TT R KSVAGISSQVEVDLNQVLEDMPAYP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELFTTGRRKSVAGISSQVEVDLNQVLEDMPAYP 60

Query: 61 SGFTPK 67
           GFTP+
Sbjct: 61 IGFTPQ 66

[Close]

BLAST of MELO3C011566 vs. NCBI nr
Match: gi|659114599|ref|XP_008457136.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 5.8e-24
Identity = 60/66 (90.91%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP 60
          MDEQ+NDQVQAVRQDVEGLKDQLAKILELLTT RGKSVAGISSQVEVDLNQVLEDM  YP
Sbjct: 1  MDEQSNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMTTYP 60

Query: 61 SGFTPK 67
           GFTP+
Sbjct: 61 PGFTPQ 66

[Close]

BLAST of MELO3C011566 vs. NCBI nr
Match: gi|659102853|ref|XP_008452348.1| (PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 6.5e-23
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP 60
          MDEQTNDQVQAVRQDVEGLKDQLAKILELLTT RGKSVAG SSQVEVDLNQVLED+ AYP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDILAYP 60

Query: 61 SGFTPK 67
            FTP+
Sbjct: 61 PSFTPQ 66

[Close]

BLAST of MELO3C011566 vs. NCBI nr
Match: gi|659122237|ref|XP_008461036.1| (PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 7.9e-21
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP 60
          MDEQTNDQVQAV QDVEGL+DQL KILELLTT RGK+VAG SSQVEVDLNQVLEDM AY 
Sbjct: 1  MDEQTNDQVQAVCQDVEGLEDQLKKILELLTTGRGKNVAGTSSQVEVDLNQVLEDMSAYL 60

Query: 61 SGFTPK 67
           GFTP+
Sbjct: 61 PGFTPQ 66

The following BLAST results are available for this feature:

BLAST of MELO3C011566 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093710\|ref\|XP_008447676.1\|	1.2e-24	92.42	PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo]	[more]
gi\|659130442\|ref\|XP_008465174.1\|	2.6e-24	92.42	PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo]	[more]
gi\|659114599\|ref\|XP_008457136.1\|	5.8e-24	90.91	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis me...	[more]
gi\|659102853\|ref\|XP_008452348.1\|	6.5e-23	89.39	PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo]	[more]
gi\|659122237\|ref\|XP_008461036.1\|	7.9e-21	84.85	PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C011566T1	MELO3C011566T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 2..29 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C011566	Cucumber (Gy14) v2	cgybmeB417
MELO3C011566	Cucumber (Chinese Long) v3	cucmeB486
MELO3C011566	Watermelon (97103) v2	mewmbB309
MELO3C011566	Wax gourd	mewgoB337
MELO3C011566	Wax gourd	mewgoB348
MELO3C011566	Cucumber (Gy14) v1	cgymeB589
MELO3C011566	Cucurbita maxima (Rimu)	cmameB270
MELO3C011566	Cucurbita maxima (Rimu)	cmameB678
MELO3C011566	Cucurbita moschata (Rifu)	cmomeB261
MELO3C011566	Cucurbita moschata (Rifu)	cmomeB670
MELO3C011566	Wild cucumber (PI 183967)	cpimeB475
MELO3C011566	Cucumber (Chinese Long) v2	cumeB476
MELO3C011566	Watermelon (Charleston Gray)	mewcgB302
MELO3C011566	Watermelon (97103) v1	mewmB310
MELO3C011566	Cucurbita pepo (Zucchini)	cpemeB170
MELO3C011566	Cucurbita pepo (Zucchini)	cpemeB399
MELO3C011566	Bottle gourd (USVL1VR-Ls)	lsimeB476