MELO3C011540 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C011540
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr3 : 15115234 .. 15115472 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGGAAGTGAAATTAGCAACATTATTGTTGCAAGGCAGTGCCGAAGACTGGTGGACTCTTCATGCGACGAGAGTAGGAAGATGAGGTTTGTTACATGGGAGGAGTTCGAAAAAGTGTTTCAGGACAAGTTTTACCCTCGCCTCTTTTGCGATGCAAGGAGGAATGAATTTATAGGTCTGATTCAAGGCGAAATGACTGTCACAGAATATGAGAAAATGTTTACTGAATTGGCAAA

mRNA sequence

ATGCAGGGAAGTGAAATTAGCAACATTATTGTTGCAAGGCAGTGCCGAAGACTGGTGGACTCTTCATGCGACGAGAGTAGGAAGATGAGGTTTGTTACATGGGAGGAGTTCGAAAAAGTGTTTCAGGACAAGTTTTACCCTCGCCTCTTTTGCGATGCAAGGAGGAATGAATTTATAGGTCTGATTCAAGGCGAAATGACTGTCACAGAATATGAGAAAATGTTTACTGAATTGGCAAA

Coding sequence (CDS)

ATGCAGGGAAGTGAAATTAGCAACATTATTGTTGCAAGGCAGTGCCGAAGACTGGTGGACTCTTCATGCGACGAGAGTAGGAAGATGAGGTTTGTTACATGGGAGGAGTTCGAAAAAGTGTTTCAGGACAAGTTTTACCCTCGCCTCTTTTGCGATGCAAGGAGGAATGAATTTATAGGTCTGATTCAAGGCGAAATGACTGTCACAGAATATGAGAAAATGTTTACTGAATTGGCAAA

Protein sequence

MQGSEISNIIVARQCRRLVDSSCDESRKMRFVTWEEFEKVFQDKFYPRLFCDARRNEFIGLIQGEMTVTEYEKMFTELA
Homology
[Close]
BLAST of MELO3C011540 vs. TrEMBL
Match: W9RK74_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001429 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-06
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1 

Query: 32 VTWEEFEKVFQDKFYPRLFCDARRNEFIGLIQGEMTVTEYEKMFTELA 80
          +TWE+FE +F ++F+P+ + D +  EF+GL QGEMTV EYE  F EL+
Sbjct: 36 MTWEQFEALFNEQFFPQSYRDEKAMEFMGLQQGEMTVREYEARFNELS 83

[Close]
BLAST of MELO3C011540 vs. TrEMBL
Match: W9RE01_9ROSA (Transposon Ty3-I Gag-Pol polyprotein OS=Morus notabilis GN=L484_009346 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.4e-06
Identity = 24/48 (50.00%), Postives = 36/48 (75.00%), Query Frame = 1 

Query: 32 VTWEEFEKVFQDKFYPRLFCDARRNEFIGLIQGEMTVTEYEKMFTELA 80
          +TWE+FE +F ++F+P+ + D +  EF+GL QG+MTV EYE  F EL+
Sbjct: 1  MTWEQFEALFNEQFFPQSYRDEKAMEFMGLQQGDMTVREYEARFNELS 48

[Close]
BLAST of MELO3C011540 vs. TrEMBL
Match: M5Y283_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019381mg PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.2e-06
Identity = 24/48 (50.00%), Postives = 36/48 (75.00%), Query Frame = 1 

Query: 32  VTWEEFEKVFQDKFYPRLFCDARRNEFIGLIQGEMTVTEYEKMFTELA 80
           +TWEEF++VF D+FYP  + + +++EF+ L QG M+V EYE  F EL+
Sbjct: 149 LTWEEFQRVFFDQFYPHSYKNEKKSEFLHLRQGSMSVLEYEHKFNELS 196

[Close]
BLAST of MELO3C011540 vs. TrEMBL
Match: M5XSR7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016975mg PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.2e-06
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 1 

Query: 32  VTWEEFEKVFQDKFYPRLFCDARRNEFIGLIQGEMTVTEYEKMFTELA 80
           + WEEF++VF D FYP  +  A+++EF+ L QG M+V EYE  F EL+
Sbjct: 144 INWEEFQRVFSDPFYPPSYKQAKKSEFLYLKQGSMSVVEYEHKFNELS 191

[Close]
BLAST of MELO3C011540 vs. NCBI nr
Match: gi|659111571|ref|XP_008455797.1| (PREDICTED: uncharacterized protein LOC103495893 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-10
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 

Query: 30  RFVTWEEFEKVFQDKFYPRLFCDARRNEFIGLIQGEMTVTEYEKMFTELA 80
           ++V WEEF K  +DKFYP  FCD +R +F+ L+QG+MTV EYEK+FTELA
Sbjct: 60  KYVMWEEFRKALRDKFYPCSFCDEKRKKFMSLLQGDMTVIEYEKIFTELA 109

[Close]
BLAST of MELO3C011540 vs. NCBI nr
Match: gi|659131051|ref|XP_008465483.1| (PREDICTED: uncharacterized protein LOC103503101 [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 8.3e-08
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1 

Query: 29  MRFVTWEEFEKVFQDKFYPRLFCDARRNEFIGLIQGEMTVTEYEKMFTELA 80
           + FVTW  F++ FQ KFYP LF D +R EF+ L+QG+ TV +Y K F ELA
Sbjct: 53  VEFVTWRYFQREFQKKFYPHLFVDEKRREFLRLVQGDETVAQYGKKFMELA 103

[Close]
BLAST of MELO3C011540 vs. NCBI nr
Match: gi|659098594|ref|XP_008450217.1| (PREDICTED: uncharacterized protein LOC103491879 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07
Identity = 28/50 (56.00%), Postives = 33/50 (66.00%), Query Frame = 1 

Query: 29  MRFVTWEEFEKVFQDKFYPRLFCDARRNEFIGLIQGEMTVTEYEKMFTEL 79
           +  V WE F K FQ+KFYP LF D +R EF+ L QG MT+ EYE  F EL
Sbjct: 121 VNIVMWEGFRKGFQEKFYPHLFVDTKRKEFLNLKQGNMTIAEYENKFIEL 170

[Close]
BLAST of MELO3C011540 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-06
Identity = 23/48 (47.92%), Postives = 36/48 (75.00%), Query Frame = 1 

Query: 32  VTWEEFEKVFQDKFYPRLFCDARRNEFIGLIQGEMTVTEYEKMFTELA 80
           ++W EF+K F +K+YPR + DA+R+EF  L+ G MT+ EYEK + +L+
Sbjct: 141 ISWNEFKKAFYEKYYPRSYKDAKRSEFFRLVLGSMTIAEYEKKYIKLS 188

[Close]
BLAST of MELO3C011540 vs. NCBI nr
Match: gi|703112656|ref|XP_010100175.1| (hypothetical protein L484_001429 [Morus notabilis])

HSP 1 Score: 59.3 bits (142), Expect = 3.5e-06
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1 

Query: 32 VTWEEFEKVFQDKFYPRLFCDARRNEFIGLIQGEMTVTEYEKMFTELA 80
          +TWE+FE +F ++F+P+ + D +  EF+GL QGEMTV EYE  F EL+
Sbjct: 36 MTWEQFEALFNEQFFPQSYRDEKAMEFMGLQQGEMTVREYEARFNELS 83

The following BLAST results are available for this feature:
BLAST of MELO3C011540 vs. TrEMBL
Match NameE-valueIdentityDescription
W9RK74_9ROSA2.4e-0652.08Uncharacterized protein OS=Morus notabilis GN=L484_001429 PE=4 SV=1[more]
W9RE01_9ROSA5.4e-0650.00Transposon Ty3-I Gag-Pol polyprotein OS=Morus notabilis GN=L484_009346 PE=4 SV=1[more]
M5Y283_PRUPE9.2e-0650.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019381mg PE=4 SV=1[more]
M5XSR7_PRUPE9.2e-0650.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb016975mg PE=4 SV=1[more]
BLAST of MELO3C011540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111571|ref|XP_008455797.1|1.0e-1062.00PREDICTED: uncharacterized protein LOC103495893 [Cucumis melo][more]
gi|659131051|ref|XP_008465483.1|8.3e-0854.90PREDICTED: uncharacterized protein LOC103503101 [Cucumis melo][more]
gi|659098594|ref|XP_008450217.1|1.4e-0756.00PREDICTED: uncharacterized protein LOC103491879 [Cucumis melo][more]
gi|659116534|ref|XP_008458118.1|2.0e-0647.92PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
gi|703112656|ref|XP_010100175.1|3.5e-0652.08hypothetical protein L484_001429 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C011540T1MELO3C011540T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 24..79
score: 2.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C011540Wax gourdmewgoB337
MELO3C011540Cucumber (Gy14) v1cgymeB589
MELO3C011540Cucurbita maxima (Rimu)cmameB270
MELO3C011540Cucurbita maxima (Rimu)cmameB678
MELO3C011540Cucurbita moschata (Rifu)cmomeB261
MELO3C011540Cucurbita moschata (Rifu)cmomeB670
MELO3C011540Wild cucumber (PI 183967)cpimeB475
MELO3C011540Cucumber (Chinese Long) v2cumeB476
MELO3C011540Watermelon (Charleston Gray)mewcgB302
MELO3C011540Watermelon (97103) v1mewmB310
MELO3C011540Cucurbita pepo (Zucchini)cpemeB170
MELO3C011540Cucurbita pepo (Zucchini)cpemeB399
MELO3C011540Bottle gourd (USVL1VR-Ls)lsimeB476
MELO3C011540Cucumber (Gy14) v2cgybmeB417
MELO3C011540Silver-seed gourdcarmeB0932
MELO3C011540Cucumber (Chinese Long) v3cucmeB486
MELO3C011540Watermelon (97103) v2mewmbB309