MELO3C011530 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C011530
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Reverse transcriptase-like protein
Location	chr3 : 15364997 .. 15365799 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGTTTCGACCTATTTCTTGTTGTAATGTGATATACCAATCTATTTCTAAGATTTTGGCTGATAGACTTTGTGTGTGGCTTCCTTCTTTTATTAGTGGTAATAAGTCTGCTTTTATTCATGAAAGGAGTATTATTGATAATATTCTTTGTGTCAGGAGCTGGTTGTGGGTTATCATCTTAACGTTGGTAAGCCTCACTGTACTTTGAAAGTTGATCTTCAAAAAGCTTATGACTCTGTTCACTTGGACTTTCTGTTTGGCCTGTTGATTACTATTGGTACTCCTTTGAGGTTTGAGCTTGCTTAGGGCCTGTGTTACTTCCCCCATGTTCTCCATTAAGATTAACGACTCCTTGGAAGGATTTTTCCATGGTAGGAAAGGTTTAAGGCAGACTTCGACCTATTTCCTTTTTGTTAATGTGATGGAGGTTCTTTCTCGTATGCTGAATAAACCTCTCCAGAGTTTCCATTTTCATCAGCAATGTGAGAAGGTTAGCTTAACTCACCTGACCATTGTTGACGACCTTATGATATTTTGTGTTACTGATGAGCCCTCTCTGAGTTTTGTTCGTGAGACTCTACAGAAGTTTGTGAGCTTTCAGGTTTGTTTGCAAATCTTGAGAAAAGCTCTATTTTTGTTGTGCGGGTTAGTAACGAGGTTGCTTCCCATTTAGATGCTAGTTTGGGTATTGCCCTTGGGAACCTACCTGTTCGCAATCTTGGACTTCCTTTACTATTTGGTAGGTTACGTCTTAATGATTATGCTCCTCTTATTCAACGTATTACTAGTCGGATTTGA

mRNA sequence

ATGGAGGAGTTTCGACCTATTTCTTGTTGTAATGTGATATACCAATCTATTTCTAAGATTTTGGCTGATAGACTTTGTGTGTGGCTTCCTTCTTTTATTAGTGGTAATAAGTCTGCTTTTATTCATGAAAGGAGTATTATTGATAATATTCTTTGTTTGTTTGCAAATCTTGAGAAAAGCTCTATTTTTGTTGTGCGGGTTAGTAACGAGGTTGCTTCCCATTTAGATGCTAGTTTGGGTATTGCCCTTGGGAACCTACCTGTTCGCAATCTTGGACTTCCTTTACTATTTGGTAGGTTACGTCTTAATGATTATGCTCCTCTTATTCAACGTATTACTAGTCGGATTTGA

Coding sequence (CDS)

ATGGAGGAGTTTCGACCTATTTCTTGTTGTAATGTGATATACCAATCTATTTCTAAGATTTTGGCTGATAGACTTTGTGTGTGGCTTCCTTCTTTTATTAGTGGTAATAAGTCTGCTTTTATTCATGAAAGGAGTATTATTGATAATATTCTTTGTTTGTTTGCAAATCTTGAGAAAAGCTCTATTTTTGTTGTGCGGGTTAGTAACGAGGTTGCTTCCCATTTAGATGCTAGTTTGGGTATTGCCCTTGGGAACCTACCTGTTCGCAATCTTGGACTTCCTTTACTATTTGGTAGGTTACGTCTTAATGATTATGCTCCTCTTATTCAACGTATTACTAGTCGGATTTGA

Protein sequence

MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILCLFANLEKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI*

Homology

[Close]

BLAST of MELO3C011530 vs. TrEMBL
Match: Q9SL12_ARATH (Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g05550 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.3e-19
Identity = 54/116 (46.55%), Postives = 79/116 (68.10%), Query Frame = 1


Query: 1   MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILCLFANLEKS 60
           M+++RPISCCNVIY+ ISKI+A+RL   LP+FI+GN+SAF+ +R +++N+L L   L KS
Sbjct: 641 MKDYRPISCCNVIYKVISKIIANRLKRLLPNFIAGNQSAFVQDRLLLENLL-LTTEL-KS 700

Query: 61  SIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI 117
           +I++          +       +G LPVR LGLPLL  RL   DYAPL++++  +I
Sbjct: 701 TIYMAGNLGSHQREIQEKFHFEVGQLPVRYLGLPLLTKRLTATDYAPLLEQLKRKI 754

[Close]

BLAST of MELO3C011530 vs. TrEMBL
Match: O64473_ARATH (Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g19100 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.9e-16
Identity = 56/140 (40.00%), Postives = 81/140 (57.86%), Query Frame = 1


Query: 1    MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILCLFANLEKS 60
            M+++RPISCCNVIY+ ISKI+A+RL +  P FI+GN+SAF+ +R +I+N+L        +
Sbjct: 934  MKDYRPISCCNVIYKVISKIIANRLKLVPPKFIAGNQSAFVKDRLLIENVLL----ATDT 993

Query: 61   SIFVVRVSNEVASHLDASLGI------------------------ALGNLPVRNLGLPLL 117
            + F V+V+ E+A    ++ G+                        A G LPVR LGLPL+
Sbjct: 994  ASFSVQVNGELAGFFQSARGLRQGCSLSPYLFVISMDILSKMLDKAAGQLPVRYLGLPLV 1053

[Close]

BLAST of MELO3C011530 vs. TrEMBL
Match: Q9LRQ9_ARATH (Reverse transcriptase-like protein OS=Arabidopsis thaliana PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.7e-12
Identity = 42/87 (48.28%), Postives = 62/87 (71.26%), Query Frame = 1


Query: 1   MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILC---LFANL 60
           M ++RPISCCNV+Y+ ISKI+A+RL   LP FISGN+SAF+ +R +I+N+L    L  + 
Sbjct: 491 MRDYRPISCCNVLYKVISKIIANRLKRILPKFISGNQSAFVKDRLLIENVLLATELVKDY 550

Query: 61  EKSSIFVVRVSNEVASHLDASLGIALG 85
            K+S F V+V+ E+A +  ++ GI  G
Sbjct: 551 HKTS-FSVQVNGELAGYFRSARGIRQG 576

[Close]

BLAST of MELO3C011530 vs. TrEMBL
Match: Q9LRQ9_ARATH (Reverse transcriptase-like protein OS=Arabidopsis thaliana PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.2e-02
Identity = 23/61 (37.70%), Postives = 36/61 (59.02%), Query Frame = 1


Query: 56  NLEKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSR 115
           N+EK++++   VS+     + +     L  LPVR LGLPL+  RL   D +PL ++I +R
Sbjct: 654 NMEKTTLYTAGVSDHNRHMMISRYPFGLAQLPVRYLGLPLVTKRLTKEDLSPLFEQIRNR 713

Query: 116 I 117
           I
Sbjct: 714 I 714

HSP 2 Score: 70.9 bits (172), Expect = 1.2e-09
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 1   MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNIL 52
           M ++RPISCCNVIY+ ISKI+A+RL V LP+FI  N+SAF+ ER +I+N+L
Sbjct: 99  MRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRERLLIENVL 149

[Close]

BLAST of MELO3C011530 vs. TrEMBL
Match: Q9FZG5_ARATH (T2E6.4 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.2e-03
Identity = 25/64 (39.06%), Postives = 42/64 (65.62%), Query Frame = 1


Query: 53  LFANLEKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRI 112
           L  +LEKS++++  VS    +++ ++   A G LPVR LGLPLL  ++   DY+PL+ ++
Sbjct: 307 LHISLEKSTLYLAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKV 366

Query: 113 TSRI 117
            S+I
Sbjct: 367 RSKI 370

HSP 2 Score: 70.5 bits (171), Expect = 1.6e-09
Identity = 30/51 (58.82%), Postives = 45/51 (88.24%), Query Frame = 1


Query: 1   MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNIL 52
           M+++RPISCCNV+Y+ ISKILA+RL + LP FI+GN+S+F+ +R +I+N+L
Sbjct: 79  MKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVKDRLLIENVL 129

[Close]

BLAST of MELO3C011530 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-32
Identity = 91/164 (55.49%), Postives = 97/164 (59.15%), Query Frame = 1


Query: 1   MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNIL--------- 60
           MEEFRPISCCNVIY+ ISKILADR+CVWLPSFIS N+SAF+  RSIIDNIL         
Sbjct: 798 MEEFRPISCCNVIYKCISKILADRICVWLPSFISSNQSAFMPGRSIIDNILLCQELVGGY 857

Query: 61  -------------------------CLFANL--------------EKSSIFVVRVSNEVA 117
                                     LF  L               KSSIFV  VS+E A
Sbjct: 858 HLNFGKPRYTLKVDLQKAYDSVNWDFLFGLLIAIGTPLKFERCKARKSSIFVAGVSHEAA 917

[Close]

BLAST of MELO3C011530 vs. NCBI nr
Match: gi|4581169|gb|AAD24652.1| (putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana])

HSP 1 Score: 101.7 bits (252), Expect = 9.1e-19
Identity = 54/116 (46.55%), Postives = 79/116 (68.10%), Query Frame = 1


Query: 1   MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILCLFANLEKS 60
           M+++RPISCCNVIY+ ISKI+A+RL   LP+FI+GN+SAF+ +R +++N+L L   L KS
Sbjct: 641 MKDYRPISCCNVIYKVISKIIANRLKRLLPNFIAGNQSAFVQDRLLLENLL-LTTEL-KS 700

Query: 61  SIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRITSRI 117
           +I++          +       +G LPVR LGLPLL  RL   DYAPL++++  +I
Sbjct: 701 TIYMAGNLGSHQREIQEKFHFEVGQLPVRYLGLPLLTKRLTATDYAPLLEQLKRKI 754

[Close]

BLAST of MELO3C011530 vs. NCBI nr
Match: gi|3176712|gb|AAD12028.1| (putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana])

HSP 1 Score: 92.8 bits (229), Expect = 4.2e-16
Identity = 56/140 (40.00%), Postives = 81/140 (57.86%), Query Frame = 1


Query: 1    MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILCLFANLEKS 60
            M+++RPISCCNVIY+ ISKI+A+RL +  P FI+GN+SAF+ +R +I+N+L        +
Sbjct: 934  MKDYRPISCCNVIYKVISKIIANRLKLVPPKFIAGNQSAFVKDRLLIENVLL----ATDT 993

Query: 61   SIFVVRVSNEVASHLDASLGI------------------------ALGNLPVRNLGLPLL 117
            + F V+V+ E+A    ++ G+                        A G LPVR LGLPL+
Sbjct: 994  ASFSVQVNGELAGFFQSARGLRQGCSLSPYLFVISMDILSKMLDKAAGQLPVRYLGLPLV 1053

[Close]

BLAST of MELO3C011530 vs. NCBI nr
Match: gi|659121154|ref|XP_008460525.1| (PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 47/64 (73.44%), Postives = 49/64 (76.56%), Query Frame = 1


Query: 53  LFANLEKSSIFVVRVSNEVASHLDASLGIALGNLPVRNLGLPLLFGRLRLNDYAPLIQRI 112
           LFAN  KSSIFV  V+NE ASHL   +G   GNL VR LGLPLL GRLR NDYAPLIQRI
Sbjct: 96  LFANPRKSSIFVAGVNNENASHLATCMGFVRGNLSVRYLGLPLLAGRLRSNDYAPLIQRI 155

Query: 113 TSRI 117
           TSRI
Sbjct: 156 TSRI 159

[Close]

BLAST of MELO3C011530 vs. NCBI nr
Match: gi|685371678|ref|XP_009119497.1| (PREDICTED: uncharacterized protein LOC103844466 [Brassica rapa])

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 52/140 (37.14%), Postives = 80/140 (57.14%), Query Frame = 1


Query: 1    MEEFRPISCCNVIYQSISKILADRLCVWLPSFISGNKSAFIHERSIIDNILCLFANLEKS 60
            M+++RPIS CNVIY+ ISKI+A+RL + LP FI+ N++AF+  R +I+N+L       ++
Sbjct: 996  MKDYRPISLCNVIYKVISKIIANRLKLTLPDFIALNQTAFVKGRLLIENLLL----ATET 1055

Query: 61   SIFVVRVSNEVASHLDASLGIALG------------------------NLPVRNLGLPLL 117
            + F V+V+ E+A +  ++ G+  G                         LPVR LGLPLL
Sbjct: 1056 ASFSVQVNGELAGYFQSTRGLRQGCALSPYLFVICMNVLSKLLDKSAKELPVRYLGLPLL 1115

The following BLAST results are available for this feature:

BLAST of MELO3C011530 vs. TrEMBL


Match Name	E-value	Identity	Description
Q9SL12_ARATH	6.3e-19	46.55	Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=A...	[more]
O64473_ARATH	2.9e-16	40.00	Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=A...	[more]
Q9LRQ9_ARATH	5.7e-12	48.28	Reverse transcriptase-like protein OS=Arabidopsis thaliana PE=3 SV=1	[more]
Q9LRQ9_ARATH	9.2e-02	37.70	Reverse transcriptase-like protein OS=Arabidopsis thaliana PE=3 SV=1	[more]
Q9FZG5_ARATH	2.2e-03	39.06	T2E6.4 OS=Arabidopsis thaliana PE=4 SV=1	[more]

BLAST of MELO3C011530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114595\|ref\|XP_008457134.1\|	1.9e-32	55.49	PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]	[more]
gi\|4581169\|gb\|AAD24652.1\|	9.1e-19	46.55	putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]	[more]
gi\|3176712\|gb\|AAD12028.1\|	4.2e-16	40.00	putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]	[more]
gi\|659121154\|ref\|XP_008460525.1\|	1.8e-14	73.44	PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein At1g65750 [Cucum...	[more]
gi\|685371678\|ref\|XP_009119497.1\|	1.1e-13	37.14	PREDICTED: uncharacterized protein LOC103844466 [Brassica rapa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C011530T1	MELO3C011530T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..56 score: 4.
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 1..54 score: 2.9
None	No IPR available	PANTHER	PTHR19446:SF340	REVERSE TRANSCRIPTASE-RELATED	coord: 1..54 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C011530	Wild cucumber (PI 183967)	cpimeB475
MELO3C011530	Cucumber (Chinese Long) v2	cumeB476
MELO3C011530	Watermelon (Charleston Gray)	mewcgB302
MELO3C011530	Watermelon (97103) v1	mewmB310
MELO3C011530	Cucurbita pepo (Zucchini)	cpemeB170
MELO3C011530	Bottle gourd (USVL1VR-Ls)	lsimeB476
MELO3C011530	Cucumber (Gy14) v2	cgybmeB417
MELO3C011530	Cucumber (Chinese Long) v3	cucmeB486
MELO3C011530	Watermelon (97103) v2	mewmbB309
MELO3C011530	Wax gourd	mewgoB337
MELO3C011530	Cucumber (Gy14) v1	cgymeB589
MELO3C011530	Cucurbita maxima (Rimu)	cmameB270
MELO3C011530	Cucurbita maxima (Rimu)	cmameB678
MELO3C011530	Cucurbita moschata (Rifu)	cmomeB261
MELO3C011530	Cucurbita moschata (Rifu)	cmomeB670