MELO3C011487 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C011487
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DWNN domain, A CCHC-type zinc finger protein
Location	chr3 : 23391576 .. 23391830 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATCCAATTCAAGTTTAGAAGCTCCGTGAACTTCGACTCGGTGGATATCCAAGGCCGACCTTCTATATCAATTGGCGACCTTAAATCCATTCGCATGAAGAACCTCGACACCTGCCAAAACTTTGATCTCGTTTTCTCCGATGCCCGAACCGGCCAAGGTATGCTTAATTTCTCTGCCACCACTGATTGTATGGTTTTGGACTCGAGTGGTAGAGTCCTTGGGTTTAATATAAAGTTCAGTTCGGAGTAA

mRNA sequence

ATGGCTATCCAATTCAAGTTTAGAAGCTCCGTGAACTTCGACTCGGTGGATATCCAAGGCCGACCTTCTATATCAATTGGCGACCTTAAATCCATTCGCATGAAGAACCTCGACACCTGCCAAAACTTTGATCTCGTTTTCTCCGATGCCCGAACCGGCCAAGGTATGCTTAATTTCTCTGCCACCACTGATTGTATGGTTTTGGACTCGAGTGGTAGAGTCCTTGGGTTTAATATAAAGTTCAGTTCGGAGTAA

Coding sequence (CDS)

ATGGCTATCCAATTCAAGTTTAGAAGCTCCGTGAACTTCGACTCGGTGGATATCCAAGGCCGACCTTCTATATCAATTGGCGACCTTAAATCCATTCGCATGAAGAACCTCGACACCTGCCAAAACTTTGATCTCGTTTTCTCCGATGCCCGAACCGGCCAAGGTATGCTTAATTTCTCTGCCACCACTGATTGTATGGTTTTGGACTCGAGTGGTAGAGTCCTTGGGTTTAATATAAAGTTCAGTTCGGAGTAA

Protein sequence

MAIQFKFRSSVNFDSVDIQGRPSISIGDLKSIRMKNLDTCQNFDLVFSDARTGQGMLNFSATTDCMVLDSSGRVLGFNIKFSSE*

Homology

[Close]

BLAST of MELO3C011487 vs. TrEMBL
Match: A0A0A0KFI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G362420 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.2e-20
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1  MAIQFKFRSSVNFDSVDIQGRPSISIGDLKS--IRMKNLDTCQNFDLVFSDARTGQGM 57
          MAIQFKFRSSVNFDSVDIQGRPSISIGDLKS  IRMKNLDTCQNFDLVFSDARTGQ +
Sbjct: 1  MAIQFKFRSSVNFDSVDIQGRPSISIGDLKSKIIRMKNLDTCQNFDLVFSDARTGQDL 58

[Close]

BLAST of MELO3C011487 vs. TrEMBL
Match: D7STW2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01780 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-12
Identity = 39/56 (69.64%), Postives = 49/56 (87.50%), Query Frame = 1


Query: 1  MAIQFKFRSSVNFDSVDIQGRPSISIGDLKS--IRMKNLDTCQNFDLVFSDARTGQ 55
          M+++FKFRS+V+FDSVDI+GRPSIS+ DL+S  +R KNLD C +FDLVFSDA TGQ
Sbjct: 1  MSVRFKFRSAVSFDSVDIEGRPSISVRDLRSKIVRHKNLDICHDFDLVFSDAVTGQ 56

[Close]

BLAST of MELO3C011487 vs. TrEMBL
Match: A0A068V0N4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00038413001 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-11
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1


Query: 1  MAIQFKFRSSVNFDSVDIQGRPSISIGDL--KSIRMKNLDTCQNFDLVFSDARTGQ 55
          M+I+FKFRSSVNFDSVDI GR SIS+ +L  K IR KNL+ CQ+FDLVFSDA +GQ
Sbjct: 1  MSIRFKFRSSVNFDSVDIDGRSSISVRELRFKIIRHKNLNICQDFDLVFSDASSGQ 56

[Close]

BLAST of MELO3C011487 vs. TrEMBL
Match: A0A067KG93_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07609 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1


Query: 1  MAIQFKFRSSVNFDSVDIQGRPSISIGDLKS--IRMKNLDTCQNFDLVFSDARTGQ 55
          MAI+F+FRSS+NFDSVDI+GRPSIS+GDLK+  +  K+L   Q+FDLVFSDA TGQ
Sbjct: 1  MAIRFRFRSSLNFDSVDIEGRPSISVGDLKAKIVHDKHLHINQDFDLVFSDAITGQ 56

[Close]

BLAST of MELO3C011487 vs. TrEMBL
Match: A0A166J2K9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_004382 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-10
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1


Query: 1  MAIQFKFRSSVNFDSVDIQGRPSISIGDLKS--IRMKNLDTCQNFDLVFSDARTGQ 55
          M+I+FKFRS+V+FD+VDI  RP+IS+G+LKS  I  KNL+ CQ FDLVFSD  TGQ
Sbjct: 1  MSIRFKFRSAVSFDAVDIGERPAISVGELKSKIIAQKNLNLCQGFDLVFSDHLTGQ 56

[Close]

BLAST of MELO3C011487 vs. NCBI nr
Match: gi|659089485|ref|XP_008445534.1| (PREDICTED: uncharacterized protein LOC103488521 isoform X2 [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-21
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1


Query: 1  MAIQFKFRSSVNFDSVDIQGRPSISIGDLKSIRMKNLDTCQNFDLVFSDARTGQGM 57
          MAIQFKFRSSVNFDSVDIQGRPSISIGDLKSIRMKNLDTCQNFDLVFSDARTGQ +
Sbjct: 1  MAIQFKFRSSVNFDSVDIQGRPSISIGDLKSIRMKNLDTCQNFDLVFSDARTGQDL 56

[Close]

BLAST of MELO3C011487 vs. NCBI nr
Match: gi|659089483|ref|XP_008445533.1| (PREDICTED: uncharacterized protein LOC103488521 isoform X1 [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-21
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1


Query: 1  MAIQFKFRSSVNFDSVDIQGRPSISIGDLKSIRMKNLDTCQNFDLVFSDARTGQGM 57
          MAIQFKFRSSVNFDSVDIQGRPSISIGDLKSIRMKNLDTCQNFDLVFSDARTGQ +
Sbjct: 1  MAIQFKFRSSVNFDSVDIQGRPSISIGDLKSIRMKNLDTCQNFDLVFSDARTGQDL 56

[Close]

BLAST of MELO3C011487 vs. NCBI nr
Match: gi|778715241|ref|XP_011657370.1| (PREDICTED: uncharacterized protein LOC101204547 isoform X1 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 6.0e-20
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1  MAIQFKFRSSVNFDSVDIQGRPSISIGDLKS--IRMKNLDTCQNFDLVFSDARTGQGM 57
          MAIQFKFRSSVNFDSVDIQGRPSISIGDLKS  IRMKNLDTCQNFDLVFSDARTGQ +
Sbjct: 1  MAIQFKFRSSVNFDSVDIQGRPSISIGDLKSKIIRMKNLDTCQNFDLVFSDARTGQDL 58

[Close]

BLAST of MELO3C011487 vs. NCBI nr
Match: gi|449453057|ref|XP_004144275.1| (PREDICTED: uncharacterized protein LOC101204547 isoform X2 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 6.0e-20
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 1


Query: 1  MAIQFKFRSSVNFDSVDIQGRPSISIGDLKS--IRMKNLDTCQNFDLVFSDARTGQGM 57
          MAIQFKFRSSVNFDSVDIQGRPSISIGDLKS  IRMKNLDTCQNFDLVFSDARTGQ +
Sbjct: 1  MAIQFKFRSSVNFDSVDIQGRPSISIGDLKSKIIRMKNLDTCQNFDLVFSDARTGQDL 58

[Close]

BLAST of MELO3C011487 vs. NCBI nr
Match: gi|1009134595|ref|XP_015884533.1| (PREDICTED: uncharacterized protein LOC107420157 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 1


Query: 1  MAIQFKFRSSVNFDSVDIQGRPSISIGDLKS--IRMKNLDTCQNFDLVFSDARTGQ 55
          MA++FKFRSS+NFD+VDI+GR SIS+ DLKS  IR KNL+ CQ+FDLVFSD+ TGQ
Sbjct: 1  MAVRFKFRSSLNFDTVDIEGRSSISVRDLKSKIIRQKNLNICQDFDLVFSDSLTGQ 56

The following BLAST results are available for this feature:

BLAST of MELO3C011487 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFI8_CUCSA	4.2e-20	93.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G362420 PE=4 SV=1	[more]
D7STW2_VITVI	1.1e-12	69.64	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g01780 PE=4 SV=...	[more]
A0A068V0N4_COFCA	1.2e-11	71.43	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00038413001 PE=4 SV=1	[more]
A0A067KG93_JATCU	2.1e-11	69.64	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07609 PE=4 SV=1	[more]
A0A166J2K9_DAUCA	1.8e-10	66.07	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_004382 PE=4 SV=1	[more]

BLAST of MELO3C011487 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089485\|ref\|XP_008445534.1\|	1.9e-21	96.43	PREDICTED: uncharacterized protein LOC103488521 isoform X2 [Cucumis melo]	[more]
gi\|659089483\|ref\|XP_008445533.1\|	1.9e-21	96.43	PREDICTED: uncharacterized protein LOC103488521 isoform X1 [Cucumis melo]	[more]
gi\|778715241\|ref\|XP_011657370.1\|	6.0e-20	93.10	PREDICTED: uncharacterized protein LOC101204547 isoform X1 [Cucumis sativus]	[more]
gi\|449453057\|ref\|XP_004144275.1\|	6.0e-20	93.10	PREDICTED: uncharacterized protein LOC101204547 isoform X2 [Cucumis sativus]	[more]
gi\|1009134595\|ref\|XP_015884533.1\|	1.2e-12	71.43	PREDICTED: uncharacterized protein LOC107420157 isoform X1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014891	DWNN_domain

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C011487T1	MELO3C011487T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014891	DWNN domain	PFAM	PF08783	DWNN	coord: 3..54 score: 8.
IPR014891	DWNN domain	SMART	SM01180	DWNN_2	coord: 3..75 score: 0.
None	No IPR available	PANTHER	PTHR15439	RETINOBLASTOMA-BINDING PROTEIN 6	coord: 1..54 score: 6.4
None	No IPR available	PANTHER	PTHR15439:SF0	SOMETHING THAT STICKS LIKE GLUE	coord: 1..54 score: 6.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C011487	Csa6G362420	Cucumber (Chinese Long) v2	cumeB466
MELO3C011487	Cla021969	Watermelon (97103) v1	mewmB301
MELO3C011487	ClCG08G009810	Watermelon (Charleston Gray)	mewcgB296
MELO3C011487	Cla97C08G152620	Watermelon (97103) v2	mewmbB303
MELO3C011487	Bhi04G001191	Wax gourd	mewgoB342
MELO3C011487	CSPI06G19060	Wild cucumber (PI 183967)	cpimeB464
MELO3C011487	Cucsa.056020	Cucumber (Gy14) v1	cgymeB040
MELO3C011487	CmaCh12G006610	Cucurbita maxima (Rimu)	cmameB164
MELO3C011487	CmoCh12G006020	Cucurbita moschata (Rifu)	cmomeB153
MELO3C011487	Lsi08G008320	Bottle gourd (USVL1VR-Ls)	lsimeB470
MELO3C011487	Cp4.1LG07g05950	Cucurbita pepo (Zucchini)	cpemeB763
MELO3C011487	CsGy6G018500	Cucumber (Gy14) v2	cgybmeB406
MELO3C011487	Carg17658	Silver-seed gourd	carmeB0135
MELO3C011487	CsaV3_6G031940	Cucumber (Chinese Long) v3	cucmeB475

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C011487	Silver-seed gourd	carmeB0142
MELO3C011487	Cucurbita maxima (Rimu)	cmameB724
MELO3C011487	Cucurbita moschata (Rifu)	cmomeB715
MELO3C011487	Cucurbita pepo (Zucchini)	cpemeB088