MELO3C011163 (gene) Melon (DHL92) v3.5.1

NameMELO3C011163
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptiontRNA (guanine-N(7)-)-methyltransferase
Locationchr3 : 25872013 .. 25873990 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAACTTTTTGTGCTGGCGAATGCCCTTTACTCCTGCAGGCTTCGGCGTTTAGCAGTATCTATTGGGGTAAATCTTCTGGTATTCTGGGTTGGTTCTTCATTTTAAGTTCTTTATTTATTTTGCTTCCCGCCTTTCGAATTCTGTTCNNNNNNNNNNNNNNNNNNNNATCTGTTGCATTGCAAATGCCCTGCCTTATGTGAGACTAGATGATTCTCTTTTGCAAAGTGCCAAAATACTAGAAACTAGGAACTTAAAGCTGTCGAGAGCTTTCTTGTGTTATTATTTGCATTCTAACGAACTTTATGTTTTTTAACCATCGTTGTATAAAATTGATTTTCAGTAGTTTATTTGTTGGTCTAGTTGCATCTCAACCCGAAAAGGCTTAGGAAATAAAGGCTATTCTTATATGATTTGATAAATAGTTTCCTTGCATATTGTCAGAGACCCAGACCTCAACAGAAAGAGTTAAGTTTGTACGCCTAATGTTGGAGTGAGCCACTTTCTAATGAAGTACTTTGATCAATATTCTGGTTATGATGTTTCCATTATCTACCTGATTTCATTCATATCTTTGATTTGGTCTCATTCAAGCTTTTTGTTTAATTCCATTGAATCGCATACATAAATGGAGGTTGCATTTTCTTTTACTTGTATTTCTCCTGCATAGCTAGGGTGTTGTTAATAGGAATCTTTTCCTTTGTTAGATTGAAACTTTTTCATTTTTTTTTATTTCAATATCAATACAAATTCGAATATCTGTATCTTGAACTCAAAAATGCTTGTCTGGCTTAAATCTTTCTTGAATGCATACTCTCGTAACTGAAGGGCCAAAATATTACTCATGCGATCCTATTTTCTATTTCTGCACTTTCTAGGGTTGTTTGTATGACTGCGCTTGCTGAGATTATCATTAAAAAAAATTCCCATTATAAGTCCTTAGTTGGTCGGATTTCCCTATTAACATTCTTTCCTGTGGCCTTGCAGCATTAACCATGTTGGAAAATGAAGCTAATCCAACTATCAGCAAGTCAACTGGCCTGCCTCGGAAGCGGTTCTATCGTGCAAGAGCACACAGCAACCCTCTAAGTGACTCTCACTTCCCAGTACCAATCTCCCCCAGTGAAGTTGATTATTCCCTTCATTACCCTCAATTATTCCCTTCAAATGATCAGCGAGATAAAAACAAAAAGATTGAATTCGCTGATATTGGCTGTGGTTTTGGAGGCCTTTTGATTAGTCTTTCGACCCTTTTCCCCGAAACCCTGATGATTGGAATGGAACTTCGGGATAAAGTAACAGAGTATGTTAAGGAACGGATCTTAGCTTTGAGAGTAGCAAATCCTGGCCAATACCAAAACATTTCAGTAGATCGAACAAATTCCATGAAGTACATTCCAAACTACTTTGAAAAAGCACAACTTTCAAAAATGTTTTTCTTGTTTCCAGACCCTCATTTCAAGGAGAAGAATCATCGCCGACGCGTAATCAGTCCACATTTGCTTGATGAGTATGCATATGCTCTGAGAGTTGGTGGGATTATATACACAATCACTGATGTGGAAGAGCTTGGAGAGTGGATGAAGACTTGTCTAGAGAACCACCCTTTGTTCGAAGCTCTAACATCAGAAGAGCTCGAGGCCGACCCAGCCGTGAAGCTCTTAAGTTCTGCAACTGAAGAAGGACAAAAGGTTGCAAGGAATGAGGGACAGACCTTTCAGGCTGTTTATAGACGCATTAGTGCAGCACCATGATTGGAAGGTTGAGCTTTCTTGGTTCGTTTAATTGAGGCAATGAGTTGTTTTCCTTGAGCTTATGCATACATCCTAAGTCTCTTCTTTGTATTCTATTTTCCGCTCTTGTAAGAGATGCATCTTAGAAATTTTATCTTATTTACTTCAGGTGTGAGCGAAGCTGAGAATTTTTGACCTAATTTGGCATTTCAAATCTGTTCGATATTATTTTTATTTTCTCCTTTTT

mRNA sequence

GCAACTTTTTGTGCTGGCGAATGCCCTTTACTCCTGCAGGCTTCGGCGTTTAGCAGTATCTATTGGGCATTAACCATGTTGGAAAATGAAGCTAATCCAACTATCAGCAAGTCAACTGGCCTGCCTCGGAAGCGGTTCTATCGTGCAAGAGCACACAGCAACCCTCTAAGTGACTCTCACTTCCCAGTACCAATCTCCCCCAGTGAAGTTGATTATTCCCTTCATTACCCTCAATTATTCCCTTCAAATGATCAGCGAGATAAAAACAAAAAGATTGAATTCGCTGATATTGGCTGTGGTTTTGGAGGCCTTTTGATTAGTCTTTCGACCCTTTTCCCCGAAACCCTGATGATTGGAATGGAACTTCGGGATAAAGTAACAGAGTATGTTAAGGAACGGATCTTAGCTTTGAGAGTAGCAAATCCTGGCCAATACCAAAACATTTCAGTAGATCGAACAAATTCCATGAAGTACATTCCAAACTACTTTGAAAAAGCACAACTTTCAAAAATGTTTTTCTTGTTTCCAGACCCTCATTTCAAGGAGAAGAATCATCGCCGACGCGTAATCAGTCCACATTTGCTTGATGAGTATGCATATGCTCTGAGAGTTGGTGGGATTATATACACAATCACTGATGTGGAAGAGCTTGGAGAGTGGATGAAGACTTGTCTAGAGAACCACCCTTTGTTCGAAGCTCTAACATCAGAAGAGCTCGAGGCCGACCCAGCCGTGAAGCTCTTAAGTTCTGCAACTGAAGAAGGACAAAAGGTTGCAAGGAATGAGGGACAGACCTTTCAGGCTGTTTATAGACGCATTAGTGCAGCACCATGATTGGAAGGTTGAGCTTTCTTGGTTCGTTTAATTGAGGCAATGAGTTGTTTTCCTTGAGCTTATGCATACATCCTAAGTCTCTTCTTTGTATTCTATTTTCCGCTCTTGTAAGAGATGCATCTTAGAAATTTTATCTTATTTACTTCAGGTGTGAGCGAAGCTGAGAATTTTTGACCTAATTTGGCATTTCAAATCTGTTCGATATTATTTTTATTTTCTCCTTTTT

Coding sequence (CDS)

ATGTTGGAAAATGAAGCTAATCCAACTATCAGCAAGTCAACTGGCCTGCCTCGGAAGCGGTTCTATCGTGCAAGAGCACACAGCAACCCTCTAAGTGACTCTCACTTCCCAGTACCAATCTCCCCCAGTGAAGTTGATTATTCCCTTCATTACCCTCAATTATTCCCTTCAAATGATCAGCGAGATAAAAACAAAAAGATTGAATTCGCTGATATTGGCTGTGGTTTTGGAGGCCTTTTGATTAGTCTTTCGACCCTTTTCCCCGAAACCCTGATGATTGGAATGGAACTTCGGGATAAAGTAACAGAGTATGTTAAGGAACGGATCTTAGCTTTGAGAGTAGCAAATCCTGGCCAATACCAAAACATTTCAGTAGATCGAACAAATTCCATGAAGTACATTCCAAACTACTTTGAAAAAGCACAACTTTCAAAAATGTTTTTCTTGTTTCCAGACCCTCATTTCAAGGAGAAGAATCATCGCCGACGCGTAATCAGTCCACATTTGCTTGATGAGTATGCATATGCTCTGAGAGTTGGTGGGATTATATACACAATCACTGATGTGGAAGAGCTTGGAGAGTGGATGAAGACTTGTCTAGAGAACCACCCTTTGTTCGAAGCTCTAACATCAGAAGAGCTCGAGGCCGACCCAGCCGTGAAGCTCTTAAGTTCTGCAACTGAAGAAGGACAAAAGGTTGCAAGGAATGAGGGACAGACCTTTCAGGCTGTTTATAGACGCATTAGTGCAGCACCATGA
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003358tRNA_(Gua-N-7)_MeTrfase_Trmb
IPR025763Trm8_euk
Vocabulary: Biological Process
TermDefinition
GO:0006400tRNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0008176tRNA (guanine-N7-)-methyltransferase activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0036265 RNA (guanine-N7)-methylation
biological_process GO:0030488 tRNA methylation
biological_process GO:0006400 tRNA modification
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0043527 tRNA methyltransferase complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0000049 tRNA binding
molecular_function GO:0008176 tRNA (guanine-N7-)-methyltransferase activity
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU51237melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C011163T2MELO3C011163T2mRNA
MELO3C011163T1MELO3C011163T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU51237MU51237transcribed_cluster


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003358tRNA (guanine-N-7) methyltransferase, Trmb typePFAMPF02390Methyltransf_4coord: 67..242
score: 1.7
IPR003358tRNA (guanine-N-7) methyltransferase, Trmb typeTIGRFAMsTIGR00091TIGR00091coord: 62..248
score: 8.4
IPR003358tRNA (guanine-N-7) methyltransferase, Trmb typePROFILEPS51625SAM_MT_TRMBcoord: 19..247
score: 58
IPR025763tRNA (guanine-N-7) methyltransferase catalytic subunit Trm8, eukaryoteHAMAPMF_03055tRNA_methyltr_TrmB_eukcoord: 16..248
score: 43
NoneNo IPR availablePANTHERPTHR234173-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASEcoord: 1..249
score: 1.4E
NoneNo IPR availablePANTHERPTHR23417:SF16TRNA (GUANINE-N(7)-)-METHYLTRANSFERASEcoord: 1..249
score: 1.4E

The following gene(s) are paralogous to this gene:

None