MELO3C010956 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010956
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Pentatricopeptide repeat-containing protein
Location	chr3 : 27539504 .. 27540791 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGCTCGGGGTCACTCCTTCCCCATTAAGGTTCGTATTAGCCTATGTGATATGTACTCAAGAGCTGGGATTGAGAAGAAGGCACTGCAAGCTCTGAGAATCTTGGAAGCTAAGAAGGAGGAGTTGGGACATGCTGATTTTGAAAGGATCATAAATGGACTTGTAGCAGGTGGCTTTTTGCAGGATGCTAAAAGAATGGCGGGGGTTATGGAGGCCCAGGGTTTTACTGCTTCCCAACCTCTTCAAATGGCTCTGAGGACATCTCAAGCTCTTCGTGGCAGAAGACTACCTTGAGATGATTTTTTGATCGTTTAAAAATTTATTGACAATTCGTTGCTGCTGGCAGAAATGTGAATATTTTACCATCAACTTGAATTCTGTGCAAAGCTAGTGGCTGGAAAGATTTTGTAGGATGGAATGGGATCTCTATGGAAATAATTGGCATCTCAGCATTGCTTTGTGAGGCATTGTTATTTCCCCCAACCGAATATAGGTTAAACCCATCTCTAGTTTTAACTTATCCATTTTTAACCATGCTATATTCTTGGTTGCATATACCTTACGAATTTTATTTTTCATGAAGTTCATAAGAATGCATGAAAAGAAAAACTATCATTCATTGACCACGACCTAGTGGTCAATCAGGGTCGTGGAAATAAGGTCCTGGAGGGAATGGATTTGATCCAGCCACCTACCTCTTGCGTGTTTCCTGGCTCCCAATATTTTAGGGTCCTATGCATATATATATAAAAAAGAAAATAAAGTGTAAAGATTTCACAATATGCTTTGACTTCTTTTAAATCTTCTTCCTTGTTTTGCTTTTACATGATACCCATTGTTGGGCCGTCTCTAAATAAAGAGTGTTTCTATTGTATGAATTGTGTATTCTCCAATTCTTAGATTCAATTTTTAATAGTATTCTCCTTTTATATAGTCGTTTAGTCGCTCGAGTTCCCCATTTTGCTGCTCTACAACTGCTCTGACAACATCTACAATAGAAATCATGCCAACTAGTTTGCCATCTATCACAGGAACATGTCTTATGCGATTCTCTGCCAATGCCAAAAACTTCAACTGGATTATTCTCTTCTTGGATGATCGTTGATGCAGCTGAAGAAGGAGCTGACTTCCCTTTTTTTTTAAATGGTAATTTCAGAATCTAAATTAAACTACATTTAGTATTTACCTGTCATAAGCTGCATTGCTTTGAGGATGTTCGTGTCGGACGTTATGGTTACTAGTTTGTCCTGTTGATGGAAAAATAAAAATGTATGCTTGAGAACTGTTG

mRNA sequence

GGCGCTCGGGGTCACTCCTTCCCCATTAAGGTTCGTATTAGCCTATGTGATATGTACTCAAGAGCTGGGATTGAGAAGAAGGCACTGCAAGCTCTGAGAATCTTGGAAGCTAAGAAGGAGGAGTTGGGACATGCTGATTTTGAAAGGATCATAAATGGACTTGTAGCAGGTGGCTTTTTGCAGGATGCTAAAAGAATGGCGGGGGTTATGGAGGCCCAGGGTTTTACTGCTTCCCAACCTCTTCAAATGGCTCTGAGGACATCTCAAGCTCTTCGTGGCAGAAGACTACCTTGAGATGATTTTTTGATCGTTTAAAAATTTATTGACAATTCGTTGCTGCTGGCAGAAATGTGAATATTTTACCATCAACTTGAATTCTGTGCAAAGCTAGTGGCTGGAAAGATTTTGTAGGATGGAATGGGATCTCTATGGAAATAATTGGCATCTCAGCATTGCTTTGTGAGGCATTGTTATTTCCCCCAACCGAATATAGGAACATGTCTTATGCGATTCTCTGCCAATGCCAAAAACTTCAACTGGATTATTCTCTTCTTGGATGATCGTTGATGCAGCTGAAGAAGGAGCTGACTTCCCTTTTTTTTTAAATGGTAATTTCAGAATCTAAATTAAACTACATTTAGTATTTACCTGTCATAAGCTGCATTGCTTTGAGGATGTTCGTGTCGGACGTTATGGTTACTAGTTTGTCCTGTTGATGGAAAAATAAAAATGTATGCTTGAGAACTGTTG

Coding sequence (CDS)

ATGTACTCAAGAGCTGGGATTGAGAAGAAGGCACTGCAAGCTCTGAGAATCTTGGAAGCTAAGAAGGAGGAGTTGGGACATGCTGATTTTGAAAGGATCATAAATGGACTTGTAGCAGGTGGCTTTTTGCAGGATGCTAAAAGAATGGCGGGGGTTATGGAGGCCCAGGGTTTTACTGCTTCCCAACCTCTTCAAATGGCTCTGAGGACATCTCAAGCTCTTCGTGGCAGAAGACTACCTTGA

Protein sequence

MYSRAGIEKKALQALRILEAKKEELGHADFERIINGLVAGGFLQDAKRMAGVMEAQGFTASQPLQMALRTSQALRGRRLP*

Homology

[Close]

BLAST of MELO3C010956 vs. Swiss-Prot
Match: PPR51_ARATH (Pentatricopeptide repeat-containing protein At1g19525 OS=Arabidopsis thaliana GN=At1g19525 PE=2 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-10
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1


Query: 1   MYSRAGIEKKALQALRILEAKKEELGHADFERIINGLVAGGFLQDAKRMAGVMEAQGFTA 60
           MYS    EKK LQAL +LEAK++++G  +F+++I+ L  GGF +DA+RM   MEA+ F  
Sbjct: 230 MYSGVRNEKKTLQALGVLEAKRDQMGPNEFDKVISALKRGGFEKDARRMYKYMEARKFLP 289

Query: 61  SQPLQM 67
           SQ LQM
Sbjct: 290 SQRLQM 295

[Close]

BLAST of MELO3C010956 vs. TrEMBL
Match: A0A0A0LL29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361790 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.6e-32
Identity = 74/80 (92.50%), Postives = 77/80 (96.25%), Query Frame = 1


Query: 1   MYSRAGIEKKALQALRILEAKKEELGHADFERIINGLVAGGFLQDAKRMAGVMEAQGFTA 60
           MYSRAGIEKKALQAL+ILEAKK+ELGH DFERIINGLVAGGFLQDAKRM GVMEAQGF A
Sbjct: 638 MYSRAGIEKKALQALKILEAKKQELGHDDFERIINGLVAGGFLQDAKRMEGVMEAQGFIA 697

Query: 61  SQPLQMALRTSQALRGRRLP 81
           SQPLQMALRTSQALRG+RLP
Sbjct: 698 SQPLQMALRTSQALRGKRLP 717

[Close]

BLAST of MELO3C010956 vs. TrEMBL
Match: A0A067GYA0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007695mg PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.7e-21
Identity = 55/80 (68.75%), Postives = 67/80 (83.75%), Query Frame = 1


Query: 1   MYSRAGIEKKALQALRILEAKKEELGHADFERIINGLVAGGFLQDAKRMAGVMEAQGFTA 60
           MY+RAGIEKKALQAL  LEAKKE++G  DFERIINGL+AGGFLQDA+R+ G+MEAQGF A
Sbjct: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570

Query: 61  SQPLQMALRTSQALRGRRLP 81
           S+ L++AL +SQ    +R P
Sbjct: 571 SERLKVALISSQTFNRQRQP 590

[Close]

BLAST of MELO3C010956 vs. TrEMBL
Match: V4TF11_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000434mg PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.7e-21
Identity = 55/80 (68.75%), Postives = 67/80 (83.75%), Query Frame = 1


Query: 1   MYSRAGIEKKALQALRILEAKKEELGHADFERIINGLVAGGFLQDAKRMAGVMEAQGFTA 60
           MY+RAGIEKKALQAL  LEAKKE++G  DFERIINGL+AGGFLQDA+R+ G+MEAQGF A
Sbjct: 633 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 692

Query: 61  SQPLQMALRTSQALRGRRLP 81
           S+ L++AL +SQ    +R P
Sbjct: 693 SERLKVALISSQTFNRQRQP 712

[Close]

BLAST of MELO3C010956 vs. TrEMBL
Match: F6H052_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g12630 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-20
Identity = 54/80 (67.50%), Postives = 67/80 (83.75%), Query Frame = 1


Query: 1   MYSRAGIEKKALQALRILEAKKEELGHADFERIINGLVAGGFLQDAKRMAGVMEAQGFTA 60
           MYSRAG+EKKALQAL ++EAKKE+L   DFERII GL+AGGF+QDA+R+ GVME QGFTA
Sbjct: 639 MYSRAGVEKKALQALGVVEAKKEQLNPEDFERIIKGLIAGGFVQDARRIHGVMETQGFTA 698

Query: 61  SQPLQMALRTSQALRGRRLP 81
           S+ L++ L +SQA+ GR  P
Sbjct: 699 SEQLKIILMSSQAV-GRERP 717

[Close]

BLAST of MELO3C010956 vs. TrEMBL
Match: A0A059BPN9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01577 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.8e-18
Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = 1


Query: 1   MYSRAGIEKKALQALRILEAKKEELGHADFERIINGLVAGGFLQDAKRMAGVMEAQGFTA 60
           MYSRAG+EKKALQ L  +EAKKE+LG  DFE+++NGLVAGGF+Q+A+RM  +M+AQGF  
Sbjct: 636 MYSRAGMEKKALQTLGAIEAKKEQLGLDDFEKVVNGLVAGGFIQEAERMHVLMQAQGFAP 695

Query: 61  SQPLQMALRTSQALRGRRLP 81
           S+ L++AL  SQA  GR+ P
Sbjct: 696 SESLKVALMASQAF-GRKRP 714

[Close]

BLAST of MELO3C010956 vs. TAIR10
Match: AT1G19520.1 (AT1G19520.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 67.0 bits (162), Expect = 6.1e-12
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1


Query: 1   MYSRAGIEKKALQALRILEAKKEELGHADFERIINGLVAGGFLQDAKRMAGVMEAQGFTA 60
           MYS    EKK LQAL +LEAK++++G  +F+++I+ L  GGF +DA+RM   MEA+ F  
Sbjct: 639 MYSGVRNEKKTLQALGVLEAKRDQMGPNEFDKVISALKRGGFEKDARRMYKYMEARKFLP 698

Query: 61  SQPLQM 67
           SQ LQM
Sbjct: 699 SQRLQM 704

[Close]

BLAST of MELO3C010956 vs. NCBI nr
Match: gi|659087970|ref|XP_008444732.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 3.7e-35
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1


Query: 1   MYSRAGIEKKALQALRILEAKKEELGHADFERIINGLVAGGFLQDAKRMAGVMEAQGFTA 60
           MYSRAGIEKKALQALRILEAKKEELGHADFERIINGLVAGGFLQDAKRMAGVMEAQGFTA
Sbjct: 638 MYSRAGIEKKALQALRILEAKKEELGHADFERIINGLVAGGFLQDAKRMAGVMEAQGFTA 697

Query: 61  SQPLQMALRTSQALRGRRLP 81
           SQPLQMALRTSQALRGRRLP
Sbjct: 698 SQPLQMALRTSQALRGRRLP 717

[Close]

BLAST of MELO3C010956 vs. NCBI nr
Match: gi|449470136|ref|XP_004152774.1| (PREDICTED: uncharacterized protein LOC101215563 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 3.8e-32
Identity = 74/80 (92.50%), Postives = 77/80 (96.25%), Query Frame = 1


Query: 1   MYSRAGIEKKALQALRILEAKKEELGHADFERIINGLVAGGFLQDAKRMAGVMEAQGFTA 60
           MYSRAGIEKKALQAL+ILEAKK+ELGH DFERIINGLVAGGFLQDAKRM GVMEAQGF A
Sbjct: 638 MYSRAGIEKKALQALKILEAKKQELGHDDFERIINGLVAGGFLQDAKRMEGVMEAQGFIA 697

Query: 61  SQPLQMALRTSQALRGRRLP 81
           SQPLQMALRTSQALRG+RLP
Sbjct: 698 SQPLQMALRTSQALRGKRLP 717

[Close]

BLAST of MELO3C010956 vs. NCBI nr
Match: gi|694421676|ref|XP_009338673.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Pyrus x bretschneideri])

HSP 1 Score: 109.8 bits (273), Expect = 2.3e-21
Identity = 54/80 (67.50%), Postives = 68/80 (85.00%), Query Frame = 1


Query: 1   MYSRAGIEKKALQALRILEAKKEELGHADFERIINGLVAGGFLQDAKRMAGVMEAQGFTA 60
           MY++AG+EKKALQAL +LEAKK++LG  +FERIINGL+AGGF+QDA R+ G+MEAQGF  
Sbjct: 628 MYAKAGVEKKALQALGVLEAKKDQLGSEEFERIINGLIAGGFVQDAHRVRGLMEAQGFAP 687

Query: 61  SQPLQMALRTSQALRGRRLP 81
           S+PL+MAL  SQA  GR+ P
Sbjct: 688 SEPLKMALMASQAF-GRKRP 706

[Close]

BLAST of MELO3C010956 vs. NCBI nr
Match: gi|641865904|gb|KDO84589.1| (hypothetical protein CISIN_1g007695mg [Citrus sinensis])

HSP 1 Score: 108.2 bits (269), Expect = 6.7e-21
Identity = 55/80 (68.75%), Postives = 67/80 (83.75%), Query Frame = 1


Query: 1   MYSRAGIEKKALQALRILEAKKEELGHADFERIINGLVAGGFLQDAKRMAGVMEAQGFTA 60
           MY+RAGIEKKALQAL  LEAKKE++G  DFERIINGL+AGGFLQDA+R+ G+MEAQGF A
Sbjct: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570

Query: 61  SQPLQMALRTSQALRGRRLP 81
           S+ L++AL +SQ    +R P
Sbjct: 571 SERLKVALISSQTFNRQRQP 590

[Close]

BLAST of MELO3C010956 vs. NCBI nr
Match: gi|567884905|ref|XP_006435011.1| (hypothetical protein CICLE_v10000434mg [Citrus clementina])

HSP 1 Score: 108.2 bits (269), Expect = 6.7e-21
Identity = 55/80 (68.75%), Postives = 67/80 (83.75%), Query Frame = 1


Query: 1   MYSRAGIEKKALQALRILEAKKEELGHADFERIINGLVAGGFLQDAKRMAGVMEAQGFTA 60
           MY+RAGIEKKALQAL  LEAKKE++G  DFERIINGL+AGGFLQDA+R+ G+MEAQGF A
Sbjct: 633 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 692

Query: 61  SQPLQMALRTSQALRGRRLP 81
           S+ L++AL +SQ    +R P
Sbjct: 693 SERLKVALISSQTFNRQRQP 712

The following BLAST results are available for this feature:

BLAST of MELO3C010956 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPR51_ARATH	1.1e-10	51.52	Pentatricopeptide repeat-containing protein At1g19525 OS=Arabidopsis thaliana GN...	[more]

BLAST of MELO3C010956 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL29_CUCSA	2.6e-32	92.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361790 PE=4 SV=1	[more]
A0A067GYA0_CITSI	4.7e-21	68.75	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007695mg PE=4 SV=1	[more]
V4TF11_9ROSI	4.7e-21	68.75	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000434mg PE=4 SV=1	[more]
F6H052_VITVI	1.8e-20	67.50	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g12630 PE=4 SV=...	[more]
A0A059BPN9_EUCGR	2.8e-18	62.50	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01577 PE=4 SV=1	[more]

BLAST of MELO3C010956 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G19520.1	6.1e-12	51.52	pentatricopeptide (PPR) repeat-containing protein	[more]

BLAST of MELO3C010956 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659087970\|ref\|XP_008444732.1\|	3.7e-35	100.00	PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucum...	[more]
gi\|449470136\|ref\|XP_004152774.1\|	3.8e-32	92.50	PREDICTED: uncharacterized protein LOC101215563 [Cucumis sativus]	[more]
gi\|694421676\|ref\|XP_009338673.1\|	2.3e-21	67.50	PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Pyrus x b...	[more]
gi\|641865904\|gb\|KDO84589.1\|	6.7e-21	68.75	hypothetical protein CISIN_1g007695mg [Citrus sinensis]	[more]
gi\|567884905\|ref\|XP_006435011.1\|	6.7e-21	68.75	hypothetical protein CICLE_v10000434mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010956T1	MELO3C010956T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..59 score: 9.4
None	No IPR available	PANTHER	PTHR24015:SF515	SUBFAMILY NOT NAMED	coord: 1..59 score: 9.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010956	Melon (DHL92) v3.5.1	memeB118
MELO3C010956	Melon (DHL92) v3.5.1	memeB134
MELO3C010956	Cucumber (Gy14) v1	cgymeB389
MELO3C010956	Cucumber (Gy14) v1	cgymeB555
MELO3C010956	Cucurbita maxima (Rimu)	cmameB023
MELO3C010956	Cucurbita maxima (Rimu)	cmameB156
MELO3C010956	Cucurbita maxima (Rimu)	cmameB412
MELO3C010956	Cucurbita maxima (Rimu)	cmameB594
MELO3C010956	Cucurbita maxima (Rimu)	cmameB727
MELO3C010956	Cucurbita moschata (Rifu)	cmomeB012
MELO3C010956	Cucurbita moschata (Rifu)	cmomeB146
MELO3C010956	Cucurbita moschata (Rifu)	cmomeB403
MELO3C010956	Cucurbita moschata (Rifu)	cmomeB584
MELO3C010956	Cucurbita moschata (Rifu)	cmomeB718
MELO3C010956	Wild cucumber (PI 183967)	cpimeB118
MELO3C010956	Wild cucumber (PI 183967)	cpimeB123
MELO3C010956	Wild cucumber (PI 183967)	cpimeB195
MELO3C010956	Wild cucumber (PI 183967)	cpimeB478
MELO3C010956	Cucumber (Chinese Long) v2	cumeB117
MELO3C010956	Cucumber (Chinese Long) v2	cumeB203
MELO3C010956	Cucumber (Chinese Long) v2	cumeB480
MELO3C010956	Watermelon (Charleston Gray)	mewcgB295
MELO3C010956	Watermelon (Charleston Gray)	mewcgB281
MELO3C010956	Watermelon (Charleston Gray)	mewcgB287
MELO3C010956	Watermelon (97103) v1	mewmB300
MELO3C010956	Watermelon (97103) v1	mewmB317
MELO3C010956	Watermelon (97103) v1	mewmB324
MELO3C010956	Cucurbita pepo (Zucchini)	cpemeB052
MELO3C010956	Cucurbita pepo (Zucchini)	cpemeB091
MELO3C010956	Cucurbita pepo (Zucchini)	cpemeB508
MELO3C010956	Cucurbita pepo (Zucchini)	cpemeB717
MELO3C010956	Cucurbita pepo (Zucchini)	cpemeB754
MELO3C010956	Bottle gourd (USVL1VR-Ls)	lsimeB132
MELO3C010956	Bottle gourd (USVL1VR-Ls)	lsimeB302
MELO3C010956	Bottle gourd (USVL1VR-Ls)	lsimeB469
MELO3C010956	Cucumber (Gy14) v2	cgybmeB102
MELO3C010956	Cucumber (Gy14) v2	cgybmeB169
MELO3C010956	Cucumber (Gy14) v2	cgybmeB420
MELO3C010956	Silver-seed gourd	carmeB0105
MELO3C010956	Silver-seed gourd	carmeB0186
MELO3C010956	Silver-seed gourd	carmeB0404
MELO3C010956	Silver-seed gourd	carmeB0927
MELO3C010956	Silver-seed gourd	carmeB0953
MELO3C010956	Cucumber (Chinese Long) v3	cucmeB124
MELO3C010956	Cucumber (Chinese Long) v3	cucmeB201
MELO3C010956	Watermelon (97103) v2	mewmbB277
MELO3C010956	Watermelon (97103) v2	mewmbB293
MELO3C010956	Watermelon (97103) v2	mewmbB302
MELO3C010956	Wax gourd	mewgoB344
MELO3C010956	Wax gourd	mewgoB355
MELO3C010956	Wax gourd	mewgoB366