MELO3C010867 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010867
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description40S ribosomal protein S13
Locationchr3 : 28039078 .. 28039565 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATAGTCGGCCGTTGTAGTAGAGCAACTCTCATCGAACTCCGGAAGCGGAAGCAGGGCCAAGGGAGACAACCATGGGTCGTATGCACAGTAGTGGTAAGGGTATTTCCGCCTCTGCATTGCCCTACAAGAGGATGCCACCAAGTTGGCTCAAGATCTCTTCTACGGATGTTGAAGATAATATCTGCAAATTTGCGAAGAAGGGCTTAACCCCTTCTCAAATTGGTTTGTGATTCTCACGGGATTGCCCAGGTCAAAAGTGTTACCGGAAACAAAATATTGCGTATTCAAGGTCCATGGACTTGCACCTGAGATTCCAGAGGATCTCTATCACTTAATCAAGAAAGCAGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAAGACTCCAAGTTCAGATTGATTCTCGTGGAGAGCAGAATTCACAGACTTGCTCGTTACTATAAGAACTCTCCTACCCTAAACCATAAAATAATTAATTGA

mRNA sequence

GATAGTCGGCCGTTGTAGTAGAGCAACTCTCATCGAACTCCGGAAGCGGAAGCAGGGCCAAGGGAGACAACCATGGGTCGTATGCACAGTAGTGGTAAGGGTATTTCCGCCTCTGCATTGCCCTACAAGAGGATGCCACCAAGTTGGCTCAAGATCTCTTCTACGGATGTTGAAGATAATATCTGCAAATTTGCGAAGAAGGGCTTAACCCCTTCTCAAATTGAGGATCTCTATCACTTAATCAAGAAAGCAGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAAGACTCCAAGTTCAGATTGATTCTCGTGGAGAGCAGAATTCACAGACTTGCTCGTTACTATAAGAACTCTCCTACCCTAAACCATAAAATAATTAATTGA

Coding sequence (CDS)

ATGGGTCGTATGCACAGTAGTGGTAAGGGTATTTCCGCCTCTGCATTGCCCTACAAGAGGATGCCACCAAGTTGGCTCAAGATCTCTTCTACGGATGTTGAAGATAATATCTGCAAATTTGCGAAGAAGGGCTTAACCCCTTCTCAAATTGAGGATCTCTATCACTTAATCAAGAAAGCAGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAAGACTCCAAGTTCAGATTGATTCTCGTGGAGAGCAGAATTCACAGACTTGCTCGTTACTATAAGAACTCTCCTACCCTAAACCATAAAATAATTAATTGA

Protein sequence

MGRMHSSGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQIEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKNSPTLNHKIIN*
Homology
[Close]
BLAST of MELO3C010867 vs. Swiss-Prot
Match: RS13_BOVIN (40S ribosomal protein S13 OS=Bos taurus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-33
Identity = 76/135 (56.30%), Postives = 86/135 (63.70%), Query Frame = 1 

Query: 1   MGRMHSSGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI---------- 60
           MGRMH+ GKG+S SALPY+R  P+WLK++S DV++ I K AKKGLTPSQI          
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 61  -------------------------EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 101
                                    EDLYHLIKKAV++RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

[Close]
BLAST of MELO3C010867 vs. Swiss-Prot
Match: RS13_RAT (40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=1 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-33
Identity = 76/135 (56.30%), Postives = 86/135 (63.70%), Query Frame = 1 

Query: 1   MGRMHSSGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI---------- 60
           MGRMH+ GKG+S SALPY+R  P+WLK++S DV++ I K AKKGLTPSQI          
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 61  -------------------------EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 101
                                    EDLYHLIKKAV++RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

[Close]
BLAST of MELO3C010867 vs. Swiss-Prot
Match: RS13_MOUSE (40S ribosomal protein S13 OS=Mus musculus GN=Rps13 PE=1 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-33
Identity = 76/135 (56.30%), Postives = 86/135 (63.70%), Query Frame = 1 

Query: 1   MGRMHSSGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI---------- 60
           MGRMH+ GKG+S SALPY+R  P+WLK++S DV++ I K AKKGLTPSQI          
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 61  -------------------------EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 101
                                    EDLYHLIKKAV++RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

[Close]
BLAST of MELO3C010867 vs. Swiss-Prot
Match: RS13_CHICK (40S ribosomal protein S13 OS=Gallus gallus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-33
Identity = 76/135 (56.30%), Postives = 86/135 (63.70%), Query Frame = 1 

Query: 1   MGRMHSSGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI---------- 60
           MGRMH+ GKG+S SALPY+R  P+WLK++S DV++ I K AKKGLTPSQI          
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 61  -------------------------EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 101
                                    EDLYHLIKKAV++RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

[Close]
BLAST of MELO3C010867 vs. Swiss-Prot
Match: RS13_CRIGR (40S ribosomal protein S13 OS=Cricetulus griseus GN=RPS13 PE=3 SV=3)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-33
Identity = 76/135 (56.30%), Postives = 86/135 (63.70%), Query Frame = 1 

Query: 1   MGRMHSSGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI---------- 60
           MGRMH+ GKG+S SALPY+R  P+WLK++S DV++ I K AKKGLTPSQI          
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLASDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 61  -------------------------EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 101
                                    EDLYHLIKKAV++RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

[Close]
BLAST of MELO3C010867 vs. TrEMBL
Match: W9RYU7_9ROSA (40S ribosomal protein S13 OS=Morus notabilis GN=L484_023230 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.1e-41
Identity = 91/115 (79.13%), Postives = 94/115 (81.74%), Query Frame = 1 

Query: 1   MGRMHSSGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI---------- 60
           MGRMHS GKGISASALPYKR PPSWLKISS DVE+N+CKFAKKGLTPSQI          
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENMCKFAKKGLTPSQIGVILRDSHGL 60

Query: 61  -----EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKNSPTL 101
                EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK +  L
Sbjct: 61  APEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKL 115

[Close]
BLAST of MELO3C010867 vs. TrEMBL
Match: A0A0D2RT37_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G040700 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 5.6e-38
Identity = 90/131 (68.70%), Postives = 93/131 (70.99%), Query Frame = 1 

Query: 1   MGRMHSSGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI---------- 60
           MGRMHS GKGISASALPYKR PPSWLKISS DVE+NI KFAKKGLTPSQI          
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENIYKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  ---------------------EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHR 101
                                EDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHR
Sbjct: 61  AQVKSVTGSKILRILKAHEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHR 120

[Close]
BLAST of MELO3C010867 vs. TrEMBL
Match: A0A118K3A9_CYNCS (Ribosomal protein S13/S15, N-terminal OS=Cynara cardunculus var. scolymus GN=Ccrd_016023 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.7e-37
Identity = 89/135 (65.93%), Postives = 92/135 (68.15%), Query Frame = 1 

Query: 1   MGRMHSSGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQIE--------- 60
           MGRMHSSGKGISASA PYKR PPSWLKISS DV+DNICKFAKKGLTPSQI          
Sbjct: 1   MGRMHSSGKGISASAKPYKRSPPSWLKISSQDVQDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  --------------------------DLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 101
                                     DLY LIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVNSVTGSKILRILKANGLAPDIPEDLYQLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

[Close]
BLAST of MELO3C010867 vs. TrEMBL
Match: G7JLB5_MEDTR (Cytoplasmic ribosomal protein S13 OS=Medicago truncatula GN=MTR_4g102170 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.8e-36
Identity = 86/135 (63.70%), Postives = 90/135 (66.67%), Query Frame = 1 

Query: 1   MGRMHSSGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI---------- 60
           MGRMHS GKGIS+SALPYKR  P WLK S+ DVE+ ICKFAKKGLTPSQI          
Sbjct: 1   MGRMHSGGKGISSSALPYKRSAPGWLKTSTQDVEETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  -------------------------EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 101
                                    EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKFITGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

[Close]
BLAST of MELO3C010867 vs. TrEMBL
Match: B7FMC8_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.4e-35
Identity = 84/132 (63.64%), Postives = 88/132 (66.67%), Query Frame = 1 

Query: 1   MGRMHSSGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI---------- 60
           MGRMHS GKGIS+SALPYKR  P WLK S+ DVE+ ICKFAKKGLTPSQI          
Sbjct: 1   MGRMHSGGKGISSSALPYKRSAPGWLKTSTQDVEETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  -------------------------EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 98
                                    EDLYHL KKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKFITGSKILRILKAHGLAPEIPEDLYHLTKKAVSIRKHLERNRKDKDSKFRLILVES 120

[Close]
BLAST of MELO3C010867 vs. TAIR10
Match: AT4G00100.1 (AT4G00100.1 ribosomal protein S13A)

HSP 1 Score: 130.6 bits (327), Expect = 5.9e-31
Identity = 77/135 (57.04%), Postives = 79/135 (58.52%), Query Frame = 1 

Query: 1   MGRMHSSGKGISASALPYKRMPPSWLKISSTDV--------------------------- 60
           MGRMHS GKGISASALPYKR  PSWLK +S DV                           
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  -------EDNICKFAKK-GLTPSQIEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 101
                     I +  K  GL P   EDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

[Close]
BLAST of MELO3C010867 vs. TAIR10
Match: AT3G60770.1 (AT3G60770.1 Ribosomal protein S13/S15)

HSP 1 Score: 128.6 bits (322), Expect = 2.2e-30
Identity = 76/135 (56.30%), Postives = 78/135 (57.78%), Query Frame = 1 

Query: 1   MGRMHSSGKGISASALPYKRMPPSWLKISSTDV--------------------------- 60
           MGRMHS GKGISASALPYKR  PSWLK +  DV                           
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  -------EDNICKFAKK-GLTPSQIEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 101
                     I +  K  GL P   EDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

[Close]
BLAST of MELO3C010867 vs. NCBI nr
Match: gi|703143947|ref|XP_010108141.1| (40S ribosomal protein S13 [Morus notabilis])

HSP 1 Score: 175.3 bits (443), Expect = 5.9e-41
Identity = 91/115 (79.13%), Postives = 94/115 (81.74%), Query Frame = 1 

Query: 1   MGRMHSSGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI---------- 60
           MGRMHS GKGISASALPYKR PPSWLKISS DVE+N+CKFAKKGLTPSQI          
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENMCKFAKKGLTPSQIGVILRDSHGL 60

Query: 61  -----EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKNSPTL 101
                EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK +  L
Sbjct: 61  APEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKL 115

[Close]
BLAST of MELO3C010867 vs. NCBI nr
Match: gi|747059822|ref|XP_011076311.1| (PREDICTED: 40S ribosomal protein S13-like [Sesamum indicum])

HSP 1 Score: 168.7 bits (426), Expect = 5.5e-39
Identity = 89/127 (70.08%), Postives = 94/127 (74.02%), Query Frame = 1 

Query: 1   MGRMHSSGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI---------- 60
           MGRMHS GKGISASALPYKR PPSWLKISS DVE+NICKFAK+G+TPSQI          
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKRGMTPSQIGVILRDSHGI 60

Query: 61  -----------------EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARY 101
                            EDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARY
Sbjct: 61  GKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARY 120

[Close]
BLAST of MELO3C010867 vs. NCBI nr
Match: gi|763754984|gb|KJB22315.1| (hypothetical protein B456_004G040700 [Gossypium raimondii])

HSP 1 Score: 164.9 bits (416), Expect = 8.0e-38
Identity = 90/131 (68.70%), Postives = 93/131 (70.99%), Query Frame = 1 

Query: 1   MGRMHSSGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI---------- 60
           MGRMHS GKGISASALPYKR PPSWLKISS DVE+NI KFAKKGLTPSQI          
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENIYKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  ---------------------EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHR 101
                                EDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHR
Sbjct: 61  AQVKSVTGSKILRILKAHEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHR 120

[Close]
BLAST of MELO3C010867 vs. NCBI nr
Match: gi|976920934|gb|KVI05640.1| (Ribosomal protein S13/S15, N-terminal [Cynara cardunculus var. scolymus])

HSP 1 Score: 161.8 bits (408), Expect = 6.8e-37
Identity = 89/135 (65.93%), Postives = 92/135 (68.15%), Query Frame = 1 

Query: 1   MGRMHSSGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQIE--------- 60
           MGRMHSSGKGISASA PYKR PPSWLKISS DV+DNICKFAKKGLTPSQI          
Sbjct: 1   MGRMHSSGKGISASAKPYKRSPPSWLKISSQDVQDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  --------------------------DLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 101
                                     DLY LIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVNSVTGSKILRILKANGLAPDIPEDLYQLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

[Close]
BLAST of MELO3C010867 vs. NCBI nr
Match: gi|357477043|ref|XP_003608807.1| (cytoplasmic ribosomal protein S13 [Medicago truncatula])

HSP 1 Score: 157.9 bits (398), Expect = 9.8e-36
Identity = 86/135 (63.70%), Postives = 90/135 (66.67%), Query Frame = 1 

Query: 1   MGRMHSSGKGISASALPYKRMPPSWLKISSTDVEDNICKFAKKGLTPSQI---------- 60
           MGRMHS GKGIS+SALPYKR  P WLK S+ DVE+ ICKFAKKGLTPSQI          
Sbjct: 1   MGRMHSGGKGISSSALPYKRSAPGWLKTSTQDVEETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  -------------------------EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 101
                                    EDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKFITGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

The following BLAST results are available for this feature:
BLAST of MELO3C010867 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS13_BOVIN1.6e-3356.3040S ribosomal protein S13 OS=Bos taurus GN=RPS13 PE=2 SV=3[more]
RS13_RAT1.6e-3356.3040S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=1 SV=2[more]
RS13_MOUSE1.6e-3356.3040S ribosomal protein S13 OS=Mus musculus GN=Rps13 PE=1 SV=2[more]
RS13_CHICK1.6e-3356.3040S ribosomal protein S13 OS=Gallus gallus GN=RPS13 PE=2 SV=3[more]
RS13_CRIGR1.6e-3356.3040S ribosomal protein S13 OS=Cricetulus griseus GN=RPS13 PE=3 SV=3[more]
BLAST of MELO3C010867 vs. TrEMBL
Match NameE-valueIdentityDescription
W9RYU7_9ROSA4.1e-4179.1340S ribosomal protein S13 OS=Morus notabilis GN=L484_023230 PE=3 SV=1[more]
A0A0D2RT37_GOSRA5.6e-3868.70Uncharacterized protein OS=Gossypium raimondii GN=B456_004G040700 PE=3 SV=1[more]
A0A118K3A9_CYNCS4.7e-3765.93Ribosomal protein S13/S15, N-terminal OS=Cynara cardunculus var. scolymus GN=Ccr... [more]
G7JLB5_MEDTR6.8e-3663.70Cytoplasmic ribosomal protein S13 OS=Medicago truncatula GN=MTR_4g102170 PE=2 SV... [more]
B7FMC8_MEDTR4.4e-3563.64Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1[more]
BLAST of MELO3C010867 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G00100.15.9e-3157.04 ribosomal protein S13A[more]
AT3G60770.12.2e-3056.30 Ribosomal protein S13/S15[more]
BLAST of MELO3C010867 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703143947|ref|XP_010108141.1|5.9e-4179.1340S ribosomal protein S13 [Morus notabilis][more]
gi|747059822|ref|XP_011076311.1|5.5e-3970.08PREDICTED: 40S ribosomal protein S13-like [Sesamum indicum][more]
gi|763754984|gb|KJB22315.1|8.0e-3868.70hypothetical protein B456_004G040700 [Gossypium raimondii][more]
gi|976920934|gb|KVI05640.1|6.8e-3765.93Ribosomal protein S13/S15, N-terminal [Cynara cardunculus var. scolymus][more]
gi|357477043|ref|XP_003608807.1|9.8e-3663.70cytoplasmic ribosomal protein S13 [Medicago truncatula][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000589Ribosomal_S15
IPR009068S15_NS1_RNA-bd
IPR012606Ribosomal_S13/S15_N
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010867T1MELO3C010867T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 48..97
score: 7.4
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 33..103
score: 1.
IPR000589Ribosomal protein S15PROSITEPS00362RIBOSOMAL_S15coord: 63..93
scor
IPR009068S15/NS1, RNA-bindingunknownSSF47060S15/NS1 RNA-binding domaincoord: 49..99
score: 8.54
IPR012606Ribosomal protein S13/S15, N-terminalPFAMPF08069Ribosomal_S13_Ncoord: 1..50
score: 3.9
IPR012606Ribosomal protein S13/S15, N-terminalSMARTSM01386Ribosomal_S13_N_2coord: 1..50
score: 2.8
NoneNo IPR availablePANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 2..95
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010867Silver-seed gourdcarmeB0186
MELO3C010867Silver-seed gourdcarmeB0765
MELO3C010867Cucumber (Chinese Long) v3cucmeB124
MELO3C010867Cucumber (Chinese Long) v3cucmeB287
MELO3C010867Watermelon (97103) v2mewmbB293
MELO3C010867Watermelon (97103) v2mewmbB302
MELO3C010867Wax gourdmewgoB322
MELO3C010867Wax gourdmewgoB369
MELO3C010867Melon (DHL92) v3.5.1memeB079
MELO3C010867Melon (DHL92) v3.5.1memeB128
MELO3C010867Cucumber (Gy14) v1cgymeB187
MELO3C010867Cucumber (Gy14) v1cgymeB380
MELO3C010867Cucumber (Gy14) v1cgymeB389
MELO3C010867Cucurbita maxima (Rimu)cmameB023
MELO3C010867Cucurbita maxima (Rimu)cmameB156
MELO3C010867Cucurbita maxima (Rimu)cmameB412
MELO3C010867Cucurbita maxima (Rimu)cmameB466
MELO3C010867Cucurbita maxima (Rimu)cmameB727
MELO3C010867Cucurbita moschata (Rifu)cmomeB012
MELO3C010867Cucurbita moschata (Rifu)cmomeB114
MELO3C010867Cucurbita moschata (Rifu)cmomeB146
MELO3C010867Cucurbita moschata (Rifu)cmomeB403
MELO3C010867Cucurbita moschata (Rifu)cmomeB718
MELO3C010867Wild cucumber (PI 183967)cpimeB118
MELO3C010867Wild cucumber (PI 183967)cpimeB280
MELO3C010867Wild cucumber (PI 183967)cpimeB558
MELO3C010867Cucumber (Chinese Long) v2cumeB117
MELO3C010867Cucumber (Chinese Long) v2cumeB290
MELO3C010867Cucumber (Chinese Long) v2cumeB549
MELO3C010867Watermelon (Charleston Gray)mewcgB295
MELO3C010867Watermelon (Charleston Gray)mewcgB287
MELO3C010867Watermelon (97103) v1mewmB300
MELO3C010867Watermelon (97103) v1mewmB317
MELO3C010867Cucurbita pepo (Zucchini)cpemeB091
MELO3C010867Cucurbita pepo (Zucchini)cpemeB508
MELO3C010867Cucurbita pepo (Zucchini)cpemeB717
MELO3C010867Cucurbita pepo (Zucchini)cpemeB754
MELO3C010867Bottle gourd (USVL1VR-Ls)lsimeB301
MELO3C010867Bottle gourd (USVL1VR-Ls)lsimeB469
MELO3C010867Cucumber (Gy14) v2cgybmeB102
MELO3C010867Cucumber (Gy14) v2cgybmeB242
MELO3C010867Cucumber (Gy14) v2cgybmeB486