MELO3C010765 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010765
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Descriptionarabinogalactan protein 15
Locationchr3 : 28717305 .. 28717887 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTATTTTCATTACTCATTTCCGATCAAAAGGGTCCTCCTGATCTCACAGTCTTCTCCTCTTTCAATTCCTCTCGCCCGAACCCTAACCCCCGAACACCTCTTCACCAATGGCCGCCGTCTCCAAAGTTTCTCTCGTGGCTCTCATTGCCATCATCTTCACCGTCGCTTCCGTTGCCGCTCAGGAGGCTCCGGCTCCCAGTCCGGCCTCCCCTGCCACCTCTATTGCTCCTTCGGTCGTCTCCGCTTGCCTCGCTGCCTTCGTTGCTCTCGCCTTCGGATCTACTCTTAGGATCTGAGGTATCGGGCTTCCGATGTGGTGATTGATTTTGCCATGGACTCTTCCATGTATTTGTGATCTGCTTTTCTTTTTTTTTTAATCTCTCTTGAAATATAACCTTGCGCGGCGGAGGAATTTGTTTTAGATGTTTTTCTAAGGGACTTTAATTTCTACACGTTTGGTACAGAGGACCTCTTTTGTTTACACATTCTTATATATAGAATGCAGGTTGTGTTGGTTTGATCACGATTGTGCTATATTTTGTTGGTTTTGATTAGTAAATAAATTGTTTCGTTCTTTTAAA

mRNA sequence

AACTATTTTCATTACTCATTTCCGATCAAAAGGGTCCTCCTGATCTCACAGTCTTCTCCTCTTTCAATTCCTCTCGCCCGAACCCTAACCCCCGAACACCTCTTCACCAATGGCCGCCGTCTCCAAAGTTTCTCTCGTGGCTCTCATTGCCATCATCTTCACCGTCGCTTCCGTTGCCGCTCAGGAGGCTCCGGCTCCCAGTCCGGCCTCCCCTGCCACCTCTATTGCTCCTTCGGTCGTCTCCGCTTGCCTCGCTGCCTTCGTTGCTCTCGCCTTCGGATCTACTCTTAGGATCTGAGGTATCGGGCTTCCGATGTGGTGATTGATTTTGCCATGGACTCTTCCATGTATTTGTGATCTGCTTTTCTTTTTTTTTTAATCTCTCTTGAAATATAACCTTGCGCGGCGGAGGAATTTGTTTTAGATGTTTTTCTAAGGGACTTTAATTTCTACACGTTTGGTACAGAGGACCTCTTTTGTTTACACATTCTTATATATAGAATGCAGGTTGTGTTGGTTTGATCACGATTGTGCTATATTTTGTTGGTTTTGATTAGTAAATAAATTGTTTCGTTCTTTTAAA

Coding sequence (CDS)

ATGGCCGCCGTCTCCAAAGTTTCTCTCGTGGCTCTCATTGCCATCATCTTCACCGTCGCTTCCGTTGCCGCTCAGGAGGCTCCGGCTCCCAGTCCGGCCTCCCCTGCCACCTCTATTGCTCCTTCGGTCGTCTCCGCTTGCCTCGCTGCCTTCGTTGCTCTCGCCTTCGGATCTACTCTTAGGATCTGA

Protein sequence

MAAVSKVSLVALIAIIFTVASVAAQEAPAPSPASPATSIAPSVVSACLAAFVALAFGSTLRI*
Homology
[Close]
BLAST of MELO3C010765 vs. Swiss-Prot
Match: AGP15_ARATH (Arabinogalactan peptide 15 OS=Arabidopsis thaliana GN=AGP15 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.5e-09
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 1 

Query: 3  AVSKVSLVALIAIIFTVASVAAQEAPAPSPASPATSIAPSVVSACLAAFVALAFGSTLRI 62
          A+SK S+V L+ +I +V + A  EAPAPSP S +++I+ S VSA +AA  AL FGS LRI
Sbjct: 2  AISKASIVVLMMVIISVVASAQSEAPAPSPTSGSSAISASFVSAGVAAVAALVFGSALRI 61

[Close]
BLAST of MELO3C010765 vs. TrEMBL
Match: A0A0A0LKU1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351840 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.9e-20
Identity = 54/62 (87.10%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 1   MAAVSKVSLVALIAIIFTVASVAAQEAPAPSPASPATSIAPSVVSACLAAFVALAFGSTL 60
           MAA+SKVSL+ALIA+IF ++SVAAQEAPAPSPASPATSIAPS VSACLAAF+ALAFGSTL
Sbjct: 67  MAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL 126

Query: 61  RI 63
           RI
Sbjct: 127 RI 128

[Close]
BLAST of MELO3C010765 vs. TrEMBL
Match: Q96504_CUCSA (CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.6e-11
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1 

Query: 1  MAAVSKVSLVALIAIIFTVASVA---AQEAPAPSPASPATSIAPSVVSACLAAFVALAFG 60
          MAAVSKVS +AL+A++F V SVA   + E+PAP PASPA S+ PS+  AC+ AF+AL FG
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 61 STLR 62
          S L+
Sbjct: 61 SALK 64

[Close]
BLAST of MELO3C010765 vs. TrEMBL
Match: A0A078C0R7_BRANA (BnaA10g20830D protein OS=Brassica napus GN=BnaA10g20830D PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.9e-08
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1 

Query: 3  AVSKVSLVALIAIIFTVASVAAQ---EAPAPSPASPATSIAPSVVSACLAAFVALAFGST 62
          A+SK S+VAL+A+I +V +  A    EAPAPSP S + + +PS+VSA +AA  AL FGS 
Sbjct: 2  AISKASVVALVAVIISVVATVASAQVEAPAPSPTSGSAAFSPSIVSAGVAAVAALVFGSA 61

[Close]
BLAST of MELO3C010765 vs. TrEMBL
Match: A0A0R0FHC2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G231000 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-07
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 3  AVSKVSLVALIAIIFTVASVAAQEAPAPSPASPATSIAPSVVSACLAAFVALAFGSTLRI 62
          A SK   +A++  +F VA ++A EAPAPSP SPA +++PS V+  LAA  ALAFGSTLRI
Sbjct: 2  AFSKALFLAVVMSVF-VAVISAAEAPAPSPTSPAAAVSPSFVAGVLAAGAALAFGSTLRI 60

[Close]
BLAST of MELO3C010765 vs. TrEMBL
Match: K7MNI3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-07
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 3   AVSKVSLVALIAIIFTVASVAAQEAPAPSPASPATSIAPSVVSACLAAFVALAFGSTLRI 62
           A SK   +A++  +F VA ++A EAPAPSP SPA +++PS V+  LAA  ALAFGSTLRI
Sbjct: 96  AFSKALFLAVVMSVF-VAVISAAEAPAPSPTSPAAAVSPSFVAGVLAAGAALAFGSTLRI 154

[Close]
BLAST of MELO3C010765 vs. TAIR10
Match: AT5G11740.1 (AT5G11740.1 arabinogalactan protein 15)

HSP 1 Score: 61.6 bits (148), Expect = 2.0e-10
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 1 

Query: 3  AVSKVSLVALIAIIFTVASVAAQEAPAPSPASPATSIAPSVVSACLAAFVALAFGSTLRI 62
          A+SK S+V L+ +I +V + A  EAPAPSP S +++I+ S VSA +AA  AL FGS LRI
Sbjct: 2  AISKASIVVLMMVIISVVASAQSEAPAPSPTSGSSAISASFVSAGVAAVAALVFGSALRI 61

[Close]
BLAST of MELO3C010765 vs. NCBI nr
Match: gi|700207284|gb|KGN62403.1| (hypothetical protein Csa_2G351840 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 9.9e-20
Identity = 54/62 (87.10%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 1   MAAVSKVSLVALIAIIFTVASVAAQEAPAPSPASPATSIAPSVVSACLAAFVALAFGSTL 60
           MAA+SKVSL+ALIA+IF ++SVAAQEAPAPSPASPATSIAPS VSACLAAF+ALAFGSTL
Sbjct: 67  MAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAVSACLAAFLALAFGSTL 126

Query: 61  RI 63
           RI
Sbjct: 127 RI 128

[Close]
BLAST of MELO3C010765 vs. NCBI nr
Match: gi|1669529|dbj|BAA08394.1| (CRG16 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1 

Query: 1  MAAVSKVSLVALIAIIFTVASVA---AQEAPAPSPASPATSIAPSVVSACLAAFVALAFG 60
          MAAVSKVS +AL+A++F V SVA   + E+PAP PASPA S+ PS+  AC+ AF+AL FG
Sbjct: 1  MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 61 STLR 62
          S L+
Sbjct: 61 SALK 64

[Close]
BLAST of MELO3C010765 vs. NCBI nr
Match: gi|674963502|emb|CDX69734.1| (BnaA10g20830D [Brassica napus])

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-07
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1 

Query: 3  AVSKVSLVALIAIIFTVASVAAQ---EAPAPSPASPATSIAPSVVSACLAAFVALAFGST 62
          A+SK S+VAL+A+I +V +  A    EAPAPSP S + + +PS+VSA +AA  AL FGS 
Sbjct: 2  AISKASVVALVAVIISVVATVASAQVEAPAPSPTSGSAAFSPSIVSAGVAAVAALVFGSA 61

[Close]
BLAST of MELO3C010765 vs. NCBI nr
Match: gi|947056058|gb|KRH05511.1| (hypothetical protein GLYMA_17G231000 [Glycine max])

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-07
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1 

Query: 3  AVSKVSLVALIAIIFTVASVAAQEAPAPSPASPATSIAPSVVSACLAAFVALAFGSTLRI 62
          A SK   +A++  +F VA ++A EAPAPSP SPA +++PS V+  LAA  ALAFGSTLRI
Sbjct: 2  AFSKALFLAVVMSVF-VAVISAAEAPAPSPTSPAAAVSPSFVAGVLAAGAALAFGSTLRI 60

[Close]
BLAST of MELO3C010765 vs. NCBI nr
Match: gi|922397357|ref|XP_013465911.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-07
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 1 

Query: 3  AVSKVSLVALIAIIFTVASVA-AQEAPAPSPASPATSIAPSVVSACLAAFVALAFGSTLR 62
          A +K  L+A +A+ F V S+A A EAPAPSP SPAT+++PS ++  +AA VALA GSTLR
Sbjct: 2  ASTKTMLLATMAVFFAVISIASAAEAPAPSPTSPATAVSPSFIAGVVAAVVALA-GSTLR 61

The following BLAST results are available for this feature:
BLAST of MELO3C010765 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGP15_ARATH3.5e-0953.33Arabinogalactan peptide 15 OS=Arabidopsis thaliana GN=AGP15 PE=1 SV=1[more]
BLAST of MELO3C010765 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKU1_CUCSA6.9e-2087.10Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351840 PE=4 SV=1[more]
Q96504_CUCSA7.6e-1159.38CRG16 OS=Cucumis sativus GN=Csa_4G645890 PE=2 SV=1[more]
A0A078C0R7_BRANA7.9e-0853.97BnaA10g20830D protein OS=Brassica napus GN=BnaA10g20830D PE=4 SV=1[more]
A0A0R0FHC2_SOYBN1.0e-0756.67Uncharacterized protein OS=Glycine max GN=GLYMA_17G231000 PE=4 SV=1[more]
K7MNI3_SOYBN1.0e-0756.67Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
BLAST of MELO3C010765 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G11740.12.0e-1053.33 arabinogalactan protein 15[more]
BLAST of MELO3C010765 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207284|gb|KGN62403.1|9.9e-2087.10hypothetical protein Csa_2G351840 [Cucumis sativus][more]
gi|1669529|dbj|BAA08394.1|1.1e-1059.38CRG16 [Cucumis sativus][more]
gi|674963502|emb|CDX69734.1|1.1e-0753.97BnaA10g20830D [Brassica napus][more]
gi|947056058|gb|KRH05511.1|1.5e-0756.67hypothetical protein GLYMA_17G231000 [Glycine max][more]
gi|922397357|ref|XP_013465911.1|3.3e-0757.38transmembrane protein, putative [Medicago truncatula][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU54497melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010765T1MELO3C010765T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU54497MU54497transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010765Silver-seed gourdcarmeB0186
MELO3C010765Silver-seed gourdcarmeB0324
MELO3C010765Silver-seed gourdcarmeB0696
MELO3C010765Silver-seed gourdcarmeB0765
MELO3C010765Cucumber (Chinese Long) v3cucmeB124
MELO3C010765Cucumber (Chinese Long) v3cucmeB287
MELO3C010765Cucumber (Chinese Long) v3cucmeB569
MELO3C010765Watermelon (97103) v2mewmbB296
MELO3C010765Watermelon (97103) v2mewmbB302
MELO3C010765Wax gourdmewgoB322
MELO3C010765Wax gourdmewgoB369
MELO3C010765Melon (DHL92) v3.5.1memeB079
MELO3C010765Melon (DHL92) v3.5.1memeB128
MELO3C010765Cucumber (Gy14) v1cgymeB380
MELO3C010765Cucumber (Gy14) v1cgymeB568
MELO3C010765Cucumber (Gy14) v1cgymeB646
MELO3C010765Cucurbita maxima (Rimu)cmameB023
MELO3C010765Cucurbita maxima (Rimu)cmameB156
MELO3C010765Cucurbita maxima (Rimu)cmameB412
MELO3C010765Cucurbita maxima (Rimu)cmameB727
MELO3C010765Cucurbita moschata (Rifu)cmomeB012
MELO3C010765Cucurbita moschata (Rifu)cmomeB146
MELO3C010765Cucurbita moschata (Rifu)cmomeB718
MELO3C010765Wild cucumber (PI 183967)cpimeB118
MELO3C010765Wild cucumber (PI 183967)cpimeB280
MELO3C010765Wild cucumber (PI 183967)cpimeB557
MELO3C010765Cucumber (Chinese Long) v2cumeB117
MELO3C010765Cucumber (Chinese Long) v2cumeB290
MELO3C010765Watermelon (Charleston Gray)mewcgB295
MELO3C010765Watermelon (Charleston Gray)mewcgB289
MELO3C010765Watermelon (97103) v1mewmB300
MELO3C010765Watermelon (97103) v1mewmB319
MELO3C010765Cucurbita pepo (Zucchini)cpemeB091
MELO3C010765Cucurbita pepo (Zucchini)cpemeB508
MELO3C010765Cucurbita pepo (Zucchini)cpemeB717
MELO3C010765Cucurbita pepo (Zucchini)cpemeB754
MELO3C010765Bottle gourd (USVL1VR-Ls)lsimeB301
MELO3C010765Bottle gourd (USVL1VR-Ls)lsimeB469
MELO3C010765Cucumber (Gy14) v2cgybmeB102
MELO3C010765Cucumber (Gy14) v2cgybmeB242