MELO3C010733 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010733
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionATP-dependent RNA helicase, putative
Locationchr3 : 28929925 .. 28931536 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACTCCCTCGATGTTGTACAAATTAGCAAGTACGTATACCACTTCACTGACTATTAAGCTCTCTCATTGGAATGTTTTAAAGTTAGCTCTTAATGGAAGTTATGCTTCTCATAAAGAAAAAAGATGGCTGTCATTGTTTTTTGCCTTTCTACACTCTTTGCTGACATGCTAGAATTTGCCTGCATATATGATCATCCTGGAATTTTTCATTTAAAATTCCCTCTTATTAATTTGTTTATATATTTTAAGACTGGTGGCAAAGTTTGGTGCCTCTTTGGGTAATAATTGGTTCCAAAGCCTCTGGAAAATCTCTTGTATCTGTGAGTTGGTTTTGCCATATAGTATCAAGATCACGATGGGGAATGGTGAAATACCAAATTATGAATCCTTTTCTTCTGCTCTCCCTGATCTCAATGCAATATACAACAGTAAAGGTCTAATGATCAGCCAAATGTGAAGTCCAAATCTCTTGTGGCTACTTTTGGATTTCTCCGAAGGCCTCCCTTGGGGGTTAATGCCCGTGGAAAACTAATGAAGTTGGAATTCTGGTTCCTTATGTTTCAAGTTTATTTTTTAAGACATCAAGGACAAGGAACTATCTTTGCAAATGGGTGTGATAGGACATCCCATTGCATTTCTACACACTTATTGCTATATGTAAAAGCGCGAACTTGATCTTATCTACTTTTTATCTGCTCATGGCCCTCAACTTTGAGGATTTCCTTCTGGGTGATCTGTTGCTTTGCTCCTGTTCCTAATAACATTCCAACCAAGCCGGCCACTCTCTCAAGAGGACATCATTCATTTTGGACAGAGCTAAGTTACTTTGGCTAACAGAGCTTTTCCTTATGGGGAAAGCTTCTCTGTCTCTCTATTTTTTTGGCGGTAGTAACTAGTTTTGTACCTGCTACTTGGTGTAGGCTCAACAGTTCTTTTTGGAACTGTATTTTATATTCACTCATCTCTGGTTAGAACCCCTTTTTGTATTTTCCTAACTTGGAATGAGGGTTGCCAGTGGTAGACTTTGTACAATTTGCATTTGCTGAATTTGTGTAAATGATCATGTATTGGTTTCCTTATCTTAAGCTTTATGTCTTGGACATAGAGTGCAAGCAAATCAACGTGCCGGGCGAGCTGGAAGAACACGTCCGGGGAAGTGCTACAGGATGTACACTTCCATGGACTATCAAGAGGAGTTATTGGATGTAACAGTTCCTGAGATCCAACGATCTTCTCTTGCTGGTAGCGTTCTTTATTTGAAATCATTGGACCTTCCAGATATAGATATTCTCAAATTTGATTTTCTTGATCCACCAACTTGTAAGTATTGGTATCGATATGAGCTCTAGAATGTTTCTTGAGCACAGCTGAATATAATAACTAAATCTAACTGCTTTTGGCAGCCGAATCTTTAGAAGATGCATTGAAGCAACTATATCTTATTGATGCTATTGATGAAAATGGATCTATTACTAGAATTGGGCAAACAATGGCTGGTACCACTCTCAGTAACTACCTCTATCTAGTTAGTTCATTTTGTGCTTATGAAGTCATACACGGTACATTCTTAAAATTTCATGATTATGGTTGCAAGAGTCTTGTAATTTAG

mRNA sequence

ATGTACTCCCTCGATGTTGTACAAATTAGCAAAGTGCAAGCAAATCAACGTGCCGGGCGAGCTGGAAGAACACGTCCGGGGAAGTGCTACAGGATGTACACTTCCATGGACTATCAAGAGGAGTTATTGGATGTAACAGTTCCTGAGATCCAACGATCTTCTCTTGCTGGTAGCGTTCTTTATTTGAAATCATTGGACCTTCCAGATATAGATATTCTCAAATTTGATTTTCTTGATCCACCAACTTCCGAATCTTTAGAAGATGCATTGAAGCAACTATATCTTATTGATGCTATTGATGAAAATGGATCTATTACTAGAATTGGGCAAACAATGGCTGGTACCACTCTCAGTAACTACCTCTATCTAGTTAGTTCATTTTGTGCTTATGAAGTCATACACGGTACATTCTTAAAATTTCATGATTATGGTTGCAAGAGTCTTGTAATTTAG

Coding sequence (CDS)

ATGTACTCCCTCGATGTTGTACAAATTAGCAAAGTGCAAGCAAATCAACGTGCCGGGCGAGCTGGAAGAACACGTCCGGGGAAGTGCTACAGGATGTACACTTCCATGGACTATCAAGAGGAGTTATTGGATGTAACAGTTCCTGAGATCCAACGATCTTCTCTTGCTGGTAGCGTTCTTTATTTGAAATCATTGGACCTTCCAGATATAGATATTCTCAAATTTGATTTTCTTGATCCACCAACTTCCGAATCTTTAGAAGATGCATTGAAGCAACTATATCTTATTGATGCTATTGATGAAAATGGATCTATTACTAGAATTGGGCAAACAATGGCTGGTACCACTCTCAGTAACTACCTCTATCTAGTTAGTTCATTTTGTGCTTATGAAGTCATACACGGTACATTCTTAAAATTTCATGATTATGGTTGCAAGAGTCTTGTAATTTAG

Protein sequence

MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVLYLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMAGTTLSNYLYLVSSFCAYEVIHGTFLKFHDYGCKSLVI*
Homology
[Close]
BLAST of MELO3C010733 vs. Swiss-Prot
Match: DEAH4_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 OS=Arabidopsis thaliana GN=At1g27900 PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.0e-48
Identity = 94/117 (80.34%), Postives = 104/117 (88.89%), Query Frame = 1 

Query: 1   MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 60
           M+SLDV+QISKVQANQRAGRAGRTRPGKCYR+Y    Y+++ LD T+PEIQR+SLAGSVL
Sbjct: 312 MFSLDVIQISKVQANQRAGRAGRTRPGKCYRLYPLAVYRDDFLDATIPEIQRTSLAGSVL 371

Query: 61  YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMAGTTL 118
           YLKSLDLPDIDILKFDFLD P+SESLEDALKQLY IDAIDENG+ITRIG+TM+   L
Sbjct: 372 YLKSLDLPDIDILKFDFLDAPSSESLEDALKQLYFIDAIDENGAITRIGRTMSDLPL 428

[Close]
BLAST of MELO3C010733 vs. Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.4e-26
Identity = 59/110 (53.64%), Postives = 79/110 (71.82%), Query Frame = 1 

Query: 4   LDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVLYLK 63
           L V  IS+ QA QRAGRAGRT PGKCYR+YT   Y++E+L   VPEIQR++LA +VL LK
Sbjct: 874 LVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLK 933

Query: 64  SLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMA 114
           ++ +   D+L FDF+D P  E+L  A++QLY + A+D+ G +TR+G+ MA
Sbjct: 934 AMGIN--DLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMA 981

[Close]
BLAST of MELO3C010733 vs. Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.4e-26
Identity = 59/110 (53.64%), Postives = 79/110 (71.82%), Query Frame = 1 

Query: 4    LDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVLYLK 63
            L V  IS+ QA QRAGRAGRT PGKCYR+YT   Y++E+L   VPEIQR++LA +VL LK
Sbjct: 898  LVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLK 957

Query: 64   SLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMA 114
            ++ +   D+L FDF+D P  E+L  A++QLY + A+D+ G +TR+G+ MA
Sbjct: 958  AMGIN--DLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMA 1005

[Close]
BLAST of MELO3C010733 vs. Swiss-Prot
Match: DHX16_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS=Caenorhabditis elegans GN=mog-4 PE=1 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 5.8e-26
Identity = 60/110 (54.55%), Postives = 78/110 (70.91%), Query Frame = 1 

Query: 4   LDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVLYLK 63
           L VV ISK  ANQRAGRAGRT PGKC+R+YT+  Y+ EL +  +PEIQR++L   VL LK
Sbjct: 675 LHVVTISKAAANQRAGRAGRTGPGKCFRLYTAWAYKHELEEQPIPEIQRTNLGNVVLMLK 734

Query: 64  SLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMA 114
           SL +   D++ FDFLDPP  E+L  AL+QLY + A++  G +T++G+ MA
Sbjct: 735 SLGIH--DLVHFDFLDPPPQETLVIALEQLYALGALNHRGELTKLGRRMA 782

[Close]
BLAST of MELO3C010733 vs. Swiss-Prot
Match: DEAH6_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 OS=Arabidopsis thaliana GN=MEE29 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.9e-25
Identity = 60/113 (53.10%), Postives = 79/113 (69.91%), Query Frame = 1 

Query: 1   MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 60
           M SL V  ISK  A QR GRAGRT PGKCYR+YT+ +Y  +L D TVPEIQR++LA  VL
Sbjct: 710 MESLLVTPISKASATQRTGRAGRTSPGKCYRLYTAFNYYNDLEDNTVPEIQRTNLASVVL 769

Query: 61  YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMA 114
            LKSL +   ++L FDF+DPP SE+L  +L+ L+ + A+++ G +T+ G+ MA
Sbjct: 770 SLKSLGIH--NLLNFDFMDPPPSEALIKSLELLFALGALNQLGELTKAGRRMA 820

[Close]
BLAST of MELO3C010733 vs. TrEMBL
Match: A0A0A0LNH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G350990 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 9.2e-55
Identity = 117/147 (79.59%), Postives = 124/147 (84.35%), Query Frame = 1 

Query: 1   MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 60
           MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL
Sbjct: 312 MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 371

Query: 61  YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMAGTTLSNY 120
           YLKSLDLPDIDIL+FDFLDPPTSESLEDALKQLYLIDAIDENGSITRIG+TMA   L   
Sbjct: 372 YLKSLDLPDIDILRFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGKTMAELPLEPS 431

Query: 121 LYLVSSFCAYEVIHGTFLKFHDYGCKS 148
           L              T ++ +++GC S
Sbjct: 432 L------------SRTLIEANEFGCIS 446

[Close]
BLAST of MELO3C010733 vs. TrEMBL
Match: A0A0D2RMZ3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G170100 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-49
Identity = 108/147 (73.47%), Postives = 118/147 (80.27%), Query Frame = 1 

Query: 1   MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 60
           MYSLDVVQISKVQANQRAGRAGRTRPGKCYR+Y S  Y ++ LDVTVPEIQRSSLAGSVL
Sbjct: 312 MYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSRVYNDDFLDVTVPEIQRSSLAGSVL 371

Query: 61  YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMAGTTLSNY 120
           YLKSLDLPDIDILKFDFLDPP++ESLEDALKQLYLIDAIDENGSIT IG+TMA   L   
Sbjct: 372 YLKSLDLPDIDILKFDFLDPPSTESLEDALKQLYLIDAIDENGSITSIGRTMAELPLEPS 431

Query: 121 LYLVSSFCAYEVIHGTFLKFHDYGCKS 148
           L              T ++ ++YGC S
Sbjct: 432 L------------SRTLIEANEYGCLS 446

[Close]
BLAST of MELO3C010733 vs. TrEMBL
Match: A0A0B0P1Q8_GOSAR (ATP-dependent RNA helicase DHX8 OS=Gossypium arboreum GN=F383_02639 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-49
Identity = 108/147 (73.47%), Postives = 118/147 (80.27%), Query Frame = 1 

Query: 1   MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 60
           MYSLDVVQISKVQANQRAGRAGRTRPGKCYR+Y S  Y ++ LDVTVPEIQRSSLAGSVL
Sbjct: 291 MYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSRVYHDDFLDVTVPEIQRSSLAGSVL 350

Query: 61  YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMAGTTLSNY 120
           YLKSLDLPDIDILKFDFLDPP++ESLEDALKQLYLIDAIDENGSIT IG+TMA   L   
Sbjct: 351 YLKSLDLPDIDILKFDFLDPPSTESLEDALKQLYLIDAIDENGSITSIGRTMAELPLEPS 410

Query: 121 LYLVSSFCAYEVIHGTFLKFHDYGCKS 148
           L              T ++ ++YGC S
Sbjct: 411 L------------SRTLIEANEYGCLS 425

[Close]
BLAST of MELO3C010733 vs. TrEMBL
Match: A0A0B0NUY2_GOSAR (Dhx8 OS=Gossypium arboreum GN=F383_02897 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-49
Identity = 108/147 (73.47%), Postives = 118/147 (80.27%), Query Frame = 1 

Query: 1   MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 60
           MYSLDVVQISKVQANQRAGRAGRTRPGKCYR+Y S  Y ++ LDVTVPEIQRSSLAGSVL
Sbjct: 296 MYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSRVYHDDFLDVTVPEIQRSSLAGSVL 355

Query: 61  YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMAGTTLSNY 120
           YLKSLDLPDIDILKFDFLDPP++ESLEDALKQLYLIDAIDENGSIT IG+TMA   L   
Sbjct: 356 YLKSLDLPDIDILKFDFLDPPSTESLEDALKQLYLIDAIDENGSITSIGRTMAELPLEPS 415

Query: 121 LYLVSSFCAYEVIHGTFLKFHDYGCKS 148
           L              T ++ ++YGC S
Sbjct: 416 L------------SRTLIEANEYGCLS 430

[Close]
BLAST of MELO3C010733 vs. TrEMBL
Match: A0A061E915_THECC (RNA helicase family protein isoform 1 OS=Theobroma cacao GN=TCM_010780 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.0e-49
Identity = 106/147 (72.11%), Postives = 118/147 (80.27%), Query Frame = 1 

Query: 1   MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 60
           MYSLDVVQ+SKVQANQRAGRAGRTRPGKCYR+Y S  Y +E LDVTVPEIQRSSLAG+VL
Sbjct: 312 MYSLDVVQVSKVQANQRAGRAGRTRPGKCYRLYPSRVYNDEFLDVTVPEIQRSSLAGTVL 371

Query: 61  YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMAGTTLSNY 120
           YLKSLDLPDIDILKFDFLDPP++ESLEDALKQLYLIDAIDENGSIT +G+TMA   L   
Sbjct: 372 YLKSLDLPDIDILKFDFLDPPSTESLEDALKQLYLIDAIDENGSITSVGRTMAELPLEPS 431

Query: 121 LYLVSSFCAYEVIHGTFLKFHDYGCKS 148
           L              T ++ ++YGC S
Sbjct: 432 L------------SRTLIEANEYGCLS 446

[Close]
BLAST of MELO3C010733 vs. TAIR10
Match: AT1G27900.1 (AT1G27900.1 RNA helicase family protein)

HSP 1 Score: 191.4 bits (485), Expect = 4.0e-49
Identity = 94/117 (80.34%), Postives = 104/117 (88.89%), Query Frame = 1 

Query: 1   MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 60
           M+SLDV+QISKVQANQRAGRAGRTRPGKCYR+Y    Y+++ LD T+PEIQR+SLAGSVL
Sbjct: 312 MFSLDVIQISKVQANQRAGRAGRTRPGKCYRLYPLAVYRDDFLDATIPEIQRTSLAGSVL 371

Query: 61  YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMAGTTL 118
           YLKSLDLPDIDILKFDFLD P+SESLEDALKQLY IDAIDENG+ITRIG+TM+   L
Sbjct: 372 YLKSLDLPDIDILKFDFLDAPSSESLEDALKQLYFIDAIDENGAITRIGRTMSDLPL 428

[Close]
BLAST of MELO3C010733 vs. TAIR10
Match: AT2G35340.1 (AT2G35340.1 helicase domain-containing protein)

HSP 1 Score: 115.5 bits (288), Expect = 2.8e-26
Identity = 60/113 (53.10%), Postives = 79/113 (69.91%), Query Frame = 1 

Query: 1   MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 60
           M SL V  ISK  A QR GRAGRT PGKCYR+YT+ +Y  +L D TVPEIQR++LA  VL
Sbjct: 710 MESLLVTPISKASATQRTGRAGRTSPGKCYRLYTAFNYYNDLEDNTVPEIQRTNLASVVL 769

Query: 61  YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMA 114
            LKSL +   ++L FDF+DPP SE+L  +L+ L+ + A+++ G +T+ G+ MA
Sbjct: 770 SLKSLGIH--NLLNFDFMDPPPSEALIKSLELLFALGALNQLGELTKAGRRMA 820

[Close]
BLAST of MELO3C010733 vs. TAIR10
Match: AT1G32490.1 (AT1G32490.1 RNA helicase family protein)

HSP 1 Score: 115.2 bits (287), Expect = 3.6e-26
Identity = 57/113 (50.44%), Postives = 80/113 (70.80%), Query Frame = 1 

Query: 1   MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 60
           M SL +  ISK  A QRAGRAGRT PGKCYR+YT+ +Y  +L + TVPE+QR++LA  VL
Sbjct: 710 MESLLITPISKASATQRAGRAGRTSPGKCYRLYTAFNYNNDLEENTVPEVQRTNLASVVL 769

Query: 61  YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMA 114
            LKSL +   D++ FDF+DPP +E+L  +L+ L+ + A+++ G +T+ G+ MA
Sbjct: 770 ALKSLGIH--DLINFDFMDPPPAEALVKSLELLFALGALNKLGELTKAGRRMA 820

[Close]
BLAST of MELO3C010733 vs. TAIR10
Match: AT3G26560.1 (AT3G26560.1 ATP-dependent RNA helicase, putative)

HSP 1 Score: 110.9 bits (276), Expect = 6.8e-25
Identity = 53/111 (47.75%), Postives = 77/111 (69.37%), Query Frame = 1 

Query: 3   SLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVLYL 62
           SL +  IS+  A QRAGRAGRT PGKCYR+YT   Y+ E+   ++PEIQR +L  + L +
Sbjct: 823 SLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPPTSIPEIQRINLGMTTLTM 882

Query: 63  KSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMA 114
           K++ +   D+L FDF+DPP  ++L  A++QLY + A+DE G +T++G+ MA
Sbjct: 883 KAMGIN--DLLSFDFMDPPQPQALISAMEQLYSLGALDEEGLLTKLGRKMA 931

[Close]
BLAST of MELO3C010733 vs. TAIR10
Match: AT3G62310.1 (AT3G62310.1 RNA helicase family protein)

HSP 1 Score: 108.6 bits (270), Expect = 3.4e-24
Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = 1 

Query: 3   SLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVLYL 62
           SL V  ISK  A+QR+GRAGRTRPGKC+R+YT   +  +L   T PEI RS+LA +VL L
Sbjct: 382 SLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTL 441

Query: 63  KSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMA 114
           K L +   D++ FDF+DPP  E+L  AL+ L  + A+D++G++T+ G+ M+
Sbjct: 442 KKLGID--DLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKTGEIMS 490

[Close]
BLAST of MELO3C010733 vs. NCBI nr
Match: gi|659087410|ref|XP_008444437.1| (PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X2 [Cucumis melo])

HSP 1 Score: 225.3 bits (573), Expect = 7.0e-56
Identity = 120/147 (81.63%), Postives = 124/147 (84.35%), Query Frame = 1 

Query: 1   MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 60
           MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL
Sbjct: 176 MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 235

Query: 61  YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMAGTTLSNY 120
           YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMA   L   
Sbjct: 236 YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMAELPLEPS 295

Query: 121 LYLVSSFCAYEVIHGTFLKFHDYGCKS 148
           L              T ++ ++YGC S
Sbjct: 296 L------------SRTLIEANEYGCIS 310

[Close]
BLAST of MELO3C010733 vs. NCBI nr
Match: gi|659087406|ref|XP_008444435.1| (PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Cucumis melo])

HSP 1 Score: 225.3 bits (573), Expect = 7.0e-56
Identity = 120/147 (81.63%), Postives = 124/147 (84.35%), Query Frame = 1 

Query: 1   MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 60
           MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL
Sbjct: 312 MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 371

Query: 61  YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMAGTTLSNY 120
           YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMA   L   
Sbjct: 372 YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMAELPLEPS 431

Query: 121 LYLVSSFCAYEVIHGTFLKFHDYGCKS 148
           L              T ++ ++YGC S
Sbjct: 432 L------------SRTLIEANEYGCIS 446

[Close]
BLAST of MELO3C010733 vs. NCBI nr
Match: gi|449450588|ref|XP_004143044.1| (PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 1.3e-54
Identity = 117/147 (79.59%), Postives = 124/147 (84.35%), Query Frame = 1 

Query: 1   MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 60
           MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL
Sbjct: 312 MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 371

Query: 61  YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMAGTTLSNY 120
           YLKSLDLPDIDIL+FDFLDPPTSESLEDALKQLYLIDAIDENGSITRIG+TMA   L   
Sbjct: 372 YLKSLDLPDIDILRFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGKTMAELPLEPS 431

Query: 121 LYLVSSFCAYEVIHGTFLKFHDYGCKS 148
           L              T ++ +++GC S
Sbjct: 432 L------------SRTLIEANEFGCIS 446

[Close]
BLAST of MELO3C010733 vs. NCBI nr
Match: gi|778670706|ref|XP_011649517.1| (PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase isoform X2 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 1.3e-54
Identity = 117/147 (79.59%), Postives = 124/147 (84.35%), Query Frame = 1 

Query: 1   MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 60
           MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL
Sbjct: 312 MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 371

Query: 61  YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMAGTTLSNY 120
           YLKSLDLPDIDIL+FDFLDPPTSESLEDALKQLYLIDAIDENGSITRIG+TMA   L   
Sbjct: 372 YLKSLDLPDIDILRFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGKTMAELPLEPS 431

Query: 121 LYLVSSFCAYEVIHGTFLKFHDYGCKS 148
           L              T ++ +++GC S
Sbjct: 432 L------------SRTLIEANEFGCIS 446

[Close]
BLAST of MELO3C010733 vs. NCBI nr
Match: gi|778670709|ref|XP_011649518.1| (PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X3 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 1.3e-54
Identity = 117/147 (79.59%), Postives = 124/147 (84.35%), Query Frame = 1 

Query: 1   MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 60
           MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL
Sbjct: 176 MYSLDVVQISKVQANQRAGRAGRTRPGKCYRMYTSMDYQEELLDVTVPEIQRSSLAGSVL 235

Query: 61  YLKSLDLPDIDILKFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGQTMAGTTLSNY 120
           YLKSLDLPDIDIL+FDFLDPPTSESLEDALKQLYLIDAIDENGSITRIG+TMA   L   
Sbjct: 236 YLKSLDLPDIDILRFDFLDPPTSESLEDALKQLYLIDAIDENGSITRIGKTMAELPLEPS 295

Query: 121 LYLVSSFCAYEVIHGTFLKFHDYGCKS 148
           L              T ++ +++GC S
Sbjct: 296 L------------SRTLIEANEFGCIS 310

The following BLAST results are available for this feature:
BLAST of MELO3C010733 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DEAH4_ARATH7.0e-4880.34Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 OS=Arabidopsi... [more]
DHX8_HUMAN3.4e-2653.64ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1[more]
DHX8_MOUSE3.4e-2653.64ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1[more]
DHX16_CAEEL5.8e-2654.55Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS=Caenorhabd... [more]
DEAH6_ARATH4.9e-2553.10Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 OS=Arabidopsi... [more]
BLAST of MELO3C010733 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNH6_CUCSA9.2e-5579.59Uncharacterized protein OS=Cucumis sativus GN=Csa_2G350990 PE=4 SV=1[more]
A0A0D2RMZ3_GOSRA1.2e-4973.47Uncharacterized protein OS=Gossypium raimondii GN=B456_005G170100 PE=4 SV=1[more]
A0A0B0P1Q8_GOSAR1.2e-4973.47ATP-dependent RNA helicase DHX8 OS=Gossypium arboreum GN=F383_02639 PE=4 SV=1[more]
A0A0B0NUY2_GOSAR1.2e-4973.47Dhx8 OS=Gossypium arboreum GN=F383_02897 PE=4 SV=1[more]
A0A061E915_THECC2.0e-4972.11RNA helicase family protein isoform 1 OS=Theobroma cacao GN=TCM_010780 PE=4 SV=1[more]
BLAST of MELO3C010733 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G27900.14.0e-4980.34 RNA helicase family protein[more]
AT2G35340.12.8e-2653.10 helicase domain-containing protein[more]
AT1G32490.13.6e-2650.44 RNA helicase family protein[more]
AT3G26560.16.8e-2547.75 ATP-dependent RNA helicase, putative[more]
AT3G62310.13.4e-2449.55 RNA helicase family protein[more]
BLAST of MELO3C010733 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659087410|ref|XP_008444437.1|7.0e-5681.63PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 iso... [more]
gi|659087406|ref|XP_008444435.1|7.0e-5681.63PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 iso... [more]
gi|449450588|ref|XP_004143044.1|1.3e-5479.59PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 iso... [more]
gi|778670706|ref|XP_011649517.1|1.3e-5479.59PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase isoform ... [more]
gi|778670709|ref|XP_011649518.1|1.3e-5479.59PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 iso... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010413 glucuronoxylan metabolic process
biological_process GO:0045132 meiotic chromosome segregation
biological_process GO:0042138 meiotic DNA double-strand break formation
biological_process GO:0007131 reciprocal meiotic recombination
biological_process GO:0032204 regulation of telomere maintenance
biological_process GO:0010332 response to gamma radiation
biological_process GO:0007062 sister chromatid cohesion
biological_process GO:0043247 telomere maintenance in response to DNA damage
biological_process GO:0045492 xylan biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0003676 nucleic acid binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU67017melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010733T1MELO3C010733T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU67017MU67017transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..130
score: 3.67
NoneNo IPR availablePANTHERPTHR18934ATP-DEPENDENT RNA HELICASEcoord: 1..113
score: 1.7
NoneNo IPR availablePANTHERPTHR18934:SF131RNA HELICASE, PUTATIVE-RELATEDcoord: 1..113
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010733Cucurbita pepo (Zucchini)cpemeB037
MELO3C010733Cucurbita pepo (Zucchini)cpemeB091
MELO3C010733Cucurbita pepo (Zucchini)cpemeB402
MELO3C010733Cucurbita pepo (Zucchini)cpemeB762
MELO3C010733Bottle gourd (USVL1VR-Ls)lsimeB303
MELO3C010733Bottle gourd (USVL1VR-Ls)lsimeB469
MELO3C010733Cucumber (Gy14) v2cgybmeB102
MELO3C010733Cucumber (Gy14) v2cgybmeB340
MELO3C010733Silver-seed gourdcarmeB0186
MELO3C010733Silver-seed gourdcarmeB0248
MELO3C010733Silver-seed gourdcarmeB0624
MELO3C010733Silver-seed gourdcarmeB0690
MELO3C010733Cucumber (Chinese Long) v3cucmeB124
MELO3C010733Cucumber (Chinese Long) v3cucmeB402
MELO3C010733Watermelon (97103) v2mewmbB302
MELO3C010733Wax gourdmewgoB322
MELO3C010733Wax gourdmewgoB363
MELO3C010733Melon (DHL92) v3.5.1memeB029
MELO3C010733Melon (DHL92) v3.5.1memeB068
MELO3C010733Cucumber (Gy14) v1cgymeB078
MELO3C010733Cucumber (Gy14) v1cgymeB646
MELO3C010733Cucurbita maxima (Rimu)cmameB163
MELO3C010733Cucurbita maxima (Rimu)cmameB373
MELO3C010733Cucurbita maxima (Rimu)cmameB681
MELO3C010733Cucurbita maxima (Rimu)cmameB727
MELO3C010733Cucurbita moschata (Rifu)cmomeB152
MELO3C010733Cucurbita moschata (Rifu)cmomeB365
MELO3C010733Cucurbita moschata (Rifu)cmomeB673
MELO3C010733Cucurbita moschata (Rifu)cmomeB718
MELO3C010733Wild cucumber (PI 183967)cpimeB118
MELO3C010733Wild cucumber (PI 183967)cpimeB389
MELO3C010733Cucumber (Chinese Long) v2cumeB117
MELO3C010733Cucumber (Chinese Long) v2cumeB393
MELO3C010733Watermelon (Charleston Gray)mewcgB295
MELO3C010733Watermelon (97103) v1mewmB300