MELO3C010728 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010728
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionProtein Iojap/ribosomal silencing factor RsfS
Locationchr3 : 28967464 .. 28970726 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCAATTATTAGTACATACAAATATAACTATTGTTCTTCGAGACTTCAATATCTAATAAATCATACAAGTCTATCAACAATAAAAGTTTACGACAGACAAAGGTTCTGCTCTATTTATAATTTTGCAGAAATATTGGGAGATGATAGATTATTATTCCTAAAATTTATACTTATTAAATTAAAATCAAACTTAACTATTTCTCATCCAATTCCGCAAAATAAAAACAAAGGCAATTGAAAATAGCCCAACGCCGGGAAGTTGGGCTGATCCACAGACCAAGCAATCAAATCGTCGCGCGAACCGGGAATTTCAAGCTCCAATCGGGAACTCTATTTTTTACGGCGGCCATCGGGATACACTGCACCGGAGAGACCACATGTTGGCGGCGCAAAGAATTCGATCTTCATCTGCTTTCTCTTCCACGATTCGTTTTCTTCAACTATGGAATAGAGGCGTCTCTGTTCACAGCCATGCTCTATCTTCTTCCACCTCTAGCTCTCCCGACAAAAGCTTACTTGATCTTCAGGAGGTCGAGACGATTCTGAACAAGGTGAAGGCGGACGATGTCAAAGTGATACCAGTCCGTAAAGACTGTGATTGGGCTGATTACATGGTGTTCGCCACTGGTAGGTCTACCTGGCATGTTAAGAACATCGCTCAAGCCCTAATTTACAAGGTACGTTTCTTCTTCTGCATTTATTTCTGATTTTATTGTTCCGACGTTTCAATTAGGTTTCCGAGCAAATGAATTTGAAGAAGGGATGTTTCTGATTATTGTGGCTTAATTTGTGATCGCGTTTTATTTGAATCGACAGGTCAAGCAAAAGCAGAAAGGTGCTAAACAGTTAGTACTTCCTAGTGTGGAAGGGCAAGAGGAAGGAAAATGGATTGTCATCGACTCTGGTCCGTGTTACTCTCTTTAACGATTACTCTGCACGTTCTTGGACTCTGTAGGAATTTGTATTGCAGATAAACCGATCGTCTCTATTTTCTAGCCTACCCACACGCTTTGAATTGTCAATTCTTCTGCACCGTAACTCTCTCCACGCGGTCTAGCAAGCTGCAACAGAGTTTACTATGATTGATGCTTTCTGCTACGACTAAAATTAGTTATTGTTCGTCAAATTAATCATCCCTCCTTAGAATTTTCTAGAAATGATGATGAAAATGAAAATTATCGTACTACTGAATTAACAAAGATTGTATCATAGTGTTGTTTTAAGATTTATTCATCTATATATTTGCTATGTCCTATGAAAAAGTTCATAATGTATACATTCTTATTGTTTCCGGCCAATGCGTTTACAGTTTATCTTTTAGCAGCCAACATGATGTAACCTTCTTACCCACAACCCGAATTTGTTGTACTAAAAGAACAATTTATTTTTTAACGTTTTCTTCTAGGTAAAGTAGTAGTTCACGCCCTCGACGAGAATGCCAGGAGTTATTACAATCTGGAGAGCCTTTGGTCCACTGAGACACCGCCTGATGATTCAGCTCAGGTGAATTCTTGTTGCTTTTCTCTTTTGCCCTTTATTAAAACAAAGGGGAAGAGCATACTTGGGCATGATTTCTTTTGCGCTTCTTTTCAACCTTCTTCTGTTTAAATGTTTAAACCAGAGGTACGCGACTTATTCTTTCTTGTGGTACCTTCGCATTTTAAGGCTCAGATGGGTGGTTGAAACGGTAGGTAGGCGTAGGCTAACTTAGAGGTGATAAATTTACACTGCTAACTTCCCTCTAGAGGCACAGACAAGATTGTGGTTAGTAAAATCACACTTCAGATACGTTTGTGATGAAATGCTAAATCACGCTTGAATGTGAAAAGTTTCAAAATAGTTCATTTTTCATATAAATATTTCGAAGTTTACAATATTAATAGAGAAACCCAAACATTGGTTTATAAGACCTTTTGTTGAAAAATGAATTTAAAAGTATTCTTACCCGTTGAGGAATGGTTAGAATTGGTGAGCATCGATGCTCCTTTGCAAGTATATAGTTATTATGGAGTGAAATGTTGACTTAGTCCGTTATTCCTCCCTTCTCTCCAAGTGGAGAGGTCTTTTGTAATCATCACAATTCACACGGGTTTCCCTTTTGTAATTTCATACTATCAATGAAGTTGTTTGTTTCTGGAAAAGAAATGTTGACCTAGTCTAGAGCAATAAACTTGATGAAGTAGACCATTTTCTTCTTTTTCCCAGCATTTTGGATGGTCTTGGCTGGATTTCCTCTTTTTAGTTTCTGAACCCCTGCTATGGCTTGGGTTAGATCAAAGGTTGGAATTGTGAGAGGGGAGGTTTCAGTTATACATACAGGGACAGCCTGACCTATAGGGATCTACAAACAGGCTCACGATAATTTAGCACTGTGTTAAGTAAAGACTACAGCCATACTCTCACGATAATCAATCGAAAGAATTCTGTGTTGTTCCTTTAAACATGTGAAATTTCTCCTACATTCGTAGGCATTAATTTGGCTACTCTCGGCTAAAAAAGGTTGATGTCGGGGGATCCCTCATTCTATCCATTTCTAGAAGTTTTGCCAGGCATGTTTGGAGATGGAGAGATGTGGTATGAAATCACTTTGAAACAGACTTTAATTATCCAAAATCAAATTTAATAATATGAAAATCATGTCTCAAAGATTGGTTATGAAGGGCTAGAGGCTTGTTAGAGAGTGTTTTTGAATGTGACAAATGATTTTAATCACACGCGGTACTCCTACCCAAACTATCGCTCTACAATTAGTTTCTGGGTGACCATGATCATAGATATTGTACCATTTCTATAAGCATATTGCAATAAACTGCTGTCATGCTCTTATATTGAGAAAATTCTTTACTGAATCGGAATGAACTGAACCAAATAAGAGTATGACCTAACTCCCTTGGTCAGACCAATGTCTTATTCTGTTCTGTGTGCAGGATCTGGACAGAGCTTTAGTGAAGATACGGCCGAAGAACAACTCCAAGAAGAAACCAGCACAAAAAACCCCTTAACAACCGAAAATTCTCTCTCAATGATCATCTCATCATCCCGTTTTTTCATTATGTAGACTTGAGAATGTAAGGAAGAAAGAAGGAATGGTGCAGATGCTTCAGTATTTTCTGGGAATTATCCATTTTCATCTTCATCCATGAAATTATGTGAGCTTATTTACTCGTTTTTTTTCTTTCAATATATATGTTTTTTACAAACAAATTAATTTAGTGTGCGAAAATTTTGAAAATGAAAATTGAAGTTTTCTTTTGAGTTTAACT

mRNA sequence

AGCAATTATTAGTACATACAAATATAACTATTGTTCTTCGAGACTTCAATATCTAATAAATCATACAAGTCTATCAACAATAAAAGTTTACGACAGACAAAGGTTCTGCTCTATTTATAATTTTGCAGAAATATTGGGAGATGATAGATTATTATTCCTAAAATTTATACTTATTAAATTAAAATCAAACTTAACTATTTCTCATCCAATTCCGCAAAATAAAAACAAAGGCAATTGAAAATAGCCCAACGCCGGGAAGTTGGGCTGATCCACAGACCAAGCAATCAAATCGTCGCGCGAACCGGGAATTTCAAGCTCCAATCGGGAACTCTATTTTTTACGGCGGCCATCGGGATACACTGCACCGGAGAGACCACATGTTGGCGGCGCAAAGAATTCGATCTTCATCTGCTTTCTCTTCCACGATTCGTTTTCTTCAACTATGGAATAGAGGCGTCTCTGTTCACAGCCATGCTCTATCTTCTTCCACCTCTAGCTCTCCCGACAAAAGCTTACTTGATCTTCAGGAGGTCGAGACGATTCTGAACAAGGTGAAGGCGGACGATGTCAAAGTGATACCAGTCCGTAAAGACTGTGATTGGGCTGATTACATGGTGTTCGCCACTGGTAGGTCTACCTGGCATGTTAAGAACATCGCTCAAGCCCTAATTTACAAGGTCAAGCAAAAGCAGAAAGGTGCTAAACAGTTAGTACTTCCTAGTGTGGAAGGGCAAGAGGAAGGAAAATGGATTGTCATCGACTCTGGTAAAGTAGTAGTTCACGCCCTCGACGAGAATGCCAGGAGTTATTACAATCTGGAGAGCCTTTGGTCCACTGAGACACCGCCTGATGATTCAGCTCAGGATCTGGACAGAGCTTTAGTGAAGATACGGCCGAAGAACAACTCCAAGAAGAAACCAGCACAAAAAACCCCTTAACAACCGAAAATTCTCTCTCAATGATCATCTCATCATCCCGTTTTTTCATTATGTAGACTTGAGAATGTAAGGAAGAAAGAAGGAATGGTGCAGATGCTTCAGTATTTTCTGGGAATTATCCATTTTCATCTTCATCCATGAAATTATGTGAGCTTATTTACTCGTTTTTTTTCTTTCAATATATATGTTTTTTACAAACAAATTAATTTAGTGTGCGAAAATTTTGAAAATGAAAATTGAAGTTTTCTTTTGAGTTTAACT

Coding sequence (CDS)

ATGTTGGCGGCGCAAAGAATTCGATCTTCATCTGCTTTCTCTTCCACGATTCGTTTTCTTCAACTATGGAATAGAGGCGTCTCTGTTCACAGCCATGCTCTATCTTCTTCCACCTCTAGCTCTCCCGACAAAAGCTTACTTGATCTTCAGGAGGTCGAGACGATTCTGAACAAGGTGAAGGCGGACGATGTCAAAGTGATACCAGTCCGTAAAGACTGTGATTGGGCTGATTACATGGTGTTCGCCACTGGTAGGTCTACCTGGCATGTTAAGAACATCGCTCAAGCCCTAATTTACAAGGTCAAGCAAAAGCAGAAAGGTGCTAAACAGTTAGTACTTCCTAGTGTGGAAGGGCAAGAGGAAGGAAAATGGATTGTCATCGACTCTGGTAAAGTAGTAGTTCACGCCCTCGACGAGAATGCCAGGAGTTATTACAATCTGGAGAGCCTTTGGTCCACTGAGACACCGCCTGATGATTCAGCTCAGGATCTGGACAGAGCTTTAGTGAAGATACGGCCGAAGAACAACTCCAAGAAGAAACCAGCACAAAAAACCCCTTAA

Protein sequence

MLAAQRIRSSSAFSSTIRFLQLWNRGVSVHSHALSSSTSSSPDKSLLDLQEVETILNKVKADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPSVEGQEEGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKKPAQKTP*
Homology
[Close]
BLAST of MELO3C010728 vs. Swiss-Prot
Match: IOJAM_ARATH (Protein Iojap-related, mitochondrial OS=Arabidopsis thaliana GN=At1g67620 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-45
Identity = 102/184 (55.43%), Postives = 120/184 (65.22%), Query Frame = 1 

Query: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVSVHSHALSSSTSSSPDKSLLDLQEVETILNKVK 60
           ML   R R SS   +  +  +L    +   S + SSS   S    +L L EVE IL  VK
Sbjct: 1   MLTTLRSRCSSLLLN--QSWKLAPNRIFASSPSFSSSAGISNVSEILTLPEVEKILADVK 60

Query: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPSVEGQE 120
           AD+V VIP    C WAD+ V ATGRS WH++NIAQAL+Y+ KQKQKGAK ++LPSV+G  
Sbjct: 61  ADNVTVIPTHNHCFWADFTVIATGRSDWHLRNIAQALVYRAKQKQKGAKHVMLPSVQGY- 120

Query: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETP-PDDSAQDLDRALVKIRPKNNSKK 180
             KWIVID GK VVHALDE AR Y+NLESLWS E+   D S QDL    VK+RPKNNSK+
Sbjct: 121 NSKWIVIDYGKFVVHALDEKARGYFNLESLWSAESSGTDTSDQDLQNVFVKVRPKNNSKR 180

Query: 181 KPAQ 184
           KPA+
Sbjct: 181 KPAK 181

[Close]
BLAST of MELO3C010728 vs. Swiss-Prot
Match: IOJAP_PSEAB (Ribosomal silencing factor RsfS OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rsfS PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.5e-11
Identity = 38/96 (39.58%), Postives = 51/96 (53.12%), Query Frame = 1 

Query: 56  LNKVKADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPS 115
           L  +KA D+  + VR      DYMV A G S+  VK++A  ++   K K+ G K L    
Sbjct: 14  LEDLKAQDIVTLDVRDKTSVTDYMVIACGSSSRQVKSLADNVL--TKAKENGVKPL---G 73

Query: 116 VEGQEEGKWIVIDSGKVVVHALDENARSYYNLESLW 152
            EG E G+W ++D G VVVH +    R +Y+LE LW
Sbjct: 74  SEGLESGEWALLDLGDVVVHVMLPATRQFYDLERLW 104

[Close]
BLAST of MELO3C010728 vs. Swiss-Prot
Match: IOJAP_SHIFL (Ribosomal silencing factor RsfS OS=Shigella flexneri GN=rsfS PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.2e-10
Identity = 35/97 (36.08%), Postives = 51/97 (52.58%), Query Frame = 1 

Query: 56  LNKVKADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPS 115
           ++ +K  D+  + V+      D M+  TG S+ HV +IA  ++    Q+ + A  L L  
Sbjct: 14  IDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAGLLPL-G 73

Query: 116 VEGQEEGKWIVIDSGKVVVHALDENARSYYNLESLWS 153
           VEG+    WIV+D G V+VH + E +R  Y LE LWS
Sbjct: 74  VEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105

[Close]
BLAST of MELO3C010728 vs. Swiss-Prot
Match: IOJAP_ECOLI (Ribosomal silencing factor RsfS OS=Escherichia coli (strain K12) GN=rsfS PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.2e-10
Identity = 35/97 (36.08%), Postives = 51/97 (52.58%), Query Frame = 1 

Query: 56  LNKVKADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPS 115
           ++ +K  D+  + V+      D M+  TG S+ HV +IA  ++    Q+ + A  L L  
Sbjct: 14  IDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAGLLPL-G 73

Query: 116 VEGQEEGKWIVIDSGKVVVHALDENARSYYNLESLWS 153
           VEG+    WIV+D G V+VH + E +R  Y LE LWS
Sbjct: 74  VEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105

[Close]
BLAST of MELO3C010728 vs. Swiss-Prot
Match: IOJAP_ECOL6 (Ribosomal silencing factor RsfS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsfS PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.2e-10
Identity = 35/97 (36.08%), Postives = 51/97 (52.58%), Query Frame = 1 

Query: 56  LNKVKADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPS 115
           ++ +K  D+  + V+      D M+  TG S+ HV +IA  ++    Q+ + A  L L  
Sbjct: 14  IDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAGLLPL-G 73

Query: 116 VEGQEEGKWIVIDSGKVVVHALDENARSYYNLESLWS 153
           VEG+    WIV+D G V+VH + E +R  Y LE LWS
Sbjct: 74  VEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105

[Close]
BLAST of MELO3C010728 vs. TrEMBL
Match: A0A0A0LNG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G350450 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 7.8e-96
Identity = 177/186 (95.16%), Postives = 182/186 (97.85%), Query Frame = 1 

Query: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVSVHSHALSSSTSSSPDKSLLDLQEVETILNKVK 60
           MLAAQRIRSSSAFSSTIRFLQLWNRGV VH HALSSST+ SPDKSLLDL+EVETILNKVK
Sbjct: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK 60

Query: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPSVEGQE 120
           ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIY++KQKQKGA+QLVLPSVEGQE
Sbjct: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQE 120

Query: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180
           EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK
Sbjct: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180

Query: 181 PAQKTP 187
           P QKTP
Sbjct: 181 PTQKTP 186

[Close]
BLAST of MELO3C010728 vs. TrEMBL
Match: A0A067JSC1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17920 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.5e-59
Identity = 124/186 (66.67%), Postives = 142/186 (76.34%), Query Frame = 1 

Query: 1   MLAAQRIRSSSAFSSTIRFL-QLWNRGVSVHSHALSSST------SSSPDKSLLDLQEVE 60
           MLAA R RS    S     L + W  G+S  SH  SSST      SSS +K LLDL EVE
Sbjct: 1   MLAALRTRSIHFCSPQPSLLHRSWKLGLSGSSHVFSSSTVESSRSSSSYNKGLLDLNEVE 60

Query: 61  TILNKVKADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVL 120
            +L  VKADDVKVIPV K CDWADYMV ATGRSTWHVKNIAQALIYK KQKQKGA++++L
Sbjct: 61  KVLTDVKADDVKVIPVEKHCDWADYMVIATGRSTWHVKNIAQALIYKAKQKQKGAERMML 120

Query: 121 PSVEGQEEGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRP 180
           PSVEGQE GKWIVIDSGKV++HALDE AR+YYNLE+LW+  T  ++  QDL++A VKIRP
Sbjct: 121 PSVEGQESGKWIVIDSGKVIIHALDEKARAYYNLENLWTCGTSRNEPVQDLEKAFVKIRP 180

[Close]
BLAST of MELO3C010728 vs. TrEMBL
Match: M5XGX3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012048mg PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 5.0e-58
Identity = 120/182 (65.93%), Postives = 140/182 (76.92%), Query Frame = 1 

Query: 1   MLAAQRIRSSSAFS-STIRFLQLWNRGVSVHSHALSSSTSSSPDKSLLDLQEVETILNKV 60
           M AA R RS S +S  +    Q W  G      AL  + SSS ++ LLDLQEVE +L+ V
Sbjct: 1   MSAALRSRSLSLYSLPSSSIFQQWKLGFP----ALERAFSSSANRGLLDLQEVEKVLSDV 60

Query: 61  KADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPSVEGQ 120
           KADDVKVIP    C+WAD+MV ATG+S WHVKNIAQALIYK KQKQKGA++LVLPSVEGQ
Sbjct: 61  KADDVKVIPANDLCEWADFMVLATGKSAWHVKNIAQALIYKSKQKQKGAQRLVLPSVEGQ 120

Query: 121 EEGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKK 180
           E GKWIVIDSGKV+VHALDE AR+YYNLE LWS + P +D+ QDL++A VKIRPKNNSK+
Sbjct: 121 EGGKWIVIDSGKVIVHALDEKARAYYNLEDLWSKKKPEEDTIQDLEKAFVKIRPKNNSKR 178

Query: 181 KP 182
           KP
Sbjct: 181 KP 178

[Close]
BLAST of MELO3C010728 vs. TrEMBL
Match: B9HIN9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s10520g PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 114/185 (61.62%), Postives = 140/185 (75.68%), Query Frame = 1 

Query: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVSVHSHALSSST-SSSPDKSLLDLQEVETILNKV 60
           MLAA  +RS S   S+      W   +S   H  SSS   S+ D+S+LDL E+E +L  V
Sbjct: 1   MLAAT-LRSRSLHLSSSLLNHPWKPVLSGSGHTFSSSAVESNSDRSILDLNEIEKVLTDV 60

Query: 61  KADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPSVEGQ 120
           +ADDVKVIP +K  +WADYMV ATGRSTWHVKNIAQALIYK KQKQKGA+++ LPSVEGQ
Sbjct: 61  RADDVKVIPAKKHAEWADYMVIATGRSTWHVKNIAQALIYKAKQKQKGAQRMTLPSVEGQ 120

Query: 121 EEGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKK 180
           E GKWIVIDSGKV+VHALDE AR+YYNLESLW+++   ++  QDLD+A +KIRPK N+ K
Sbjct: 121 EGGKWIVIDSGKVIVHALDEKARAYYNLESLWTSDASKEEPDQDLDKAFIKIRPKRNNSK 180

Query: 181 KPAQK 185
           +PA +
Sbjct: 181 RPANR 184

[Close]
BLAST of MELO3C010728 vs. TrEMBL
Match: B9RMM5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1081870 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.7e-56
Identity = 123/201 (61.19%), Postives = 142/201 (70.65%), Query Frame = 1 

Query: 1   MLAAQRIRSSSAFSSTIRFLQ-LWNRGVSVHSHALSSSTSSSP-----DKSLLDLQEVET 60
           MLAA R RS +        L   W    S  SH  SSST  S      +K LLDL EVE 
Sbjct: 1   MLAALRSRSFNLSRQPASLLHGSWKLRFSGSSHVFSSSTMESSSGISINKGLLDLNEVEK 60

Query: 61  ILNKVKADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKV---------KQKQ 120
           +L  VKADDVKVIPV+K CDW DYMV ATGRSTWHVKNIAQALIYK          KQKQ
Sbjct: 61  VLTDVKADDVKVIPVQKQCDWVDYMVIATGRSTWHVKNIAQALIYKAGFALLLSFSKQKQ 120

Query: 121 KGAKQLVLPSVEGQEEGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLD 180
           KGA++++LPSVEGQE GKWIV+DSGKV+VHALDE AR+YYNLE+LW++ T   +  Q+L+
Sbjct: 121 KGAQRMMLPSVEGQEAGKWIVVDSGKVIVHALDEKARAYYNLENLWTSNTSRKEPVQELE 180

Query: 181 RALVKIRPKNNSKKKPAQKTP 187
           +A VKIRPKNNS KKPAQ+ P
Sbjct: 181 QAFVKIRPKNNS-KKPAQRRP 200

[Close]
BLAST of MELO3C010728 vs. TAIR10
Match: AT1G67620.1 (AT1G67620.1 Lojap-related protein)

HSP 1 Score: 184.5 bits (467), Expect = 6.0e-47
Identity = 102/184 (55.43%), Postives = 120/184 (65.22%), Query Frame = 1 

Query: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVSVHSHALSSSTSSSPDKSLLDLQEVETILNKVK 60
           ML   R R SS   +  +  +L    +   S + SSS   S    +L L EVE IL  VK
Sbjct: 1   MLTTLRSRCSSLLLN--QSWKLAPNRIFASSPSFSSSAGISNVSEILTLPEVEKILADVK 60

Query: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPSVEGQE 120
           AD+V VIP    C WAD+ V ATGRS WH++NIAQAL+Y+ KQKQKGAK ++LPSV+G  
Sbjct: 61  ADNVTVIPTHNHCFWADFTVIATGRSDWHLRNIAQALVYRAKQKQKGAKHVMLPSVQGY- 120

Query: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETP-PDDSAQDLDRALVKIRPKNNSKK 180
             KWIVID GK VVHALDE AR Y+NLESLWS E+   D S QDL    VK+RPKNNSK+
Sbjct: 121 NSKWIVIDYGKFVVHALDEKARGYFNLESLWSAESSGTDTSDQDLQNVFVKVRPKNNSKR 180

Query: 181 KPAQ 184
           KPA+
Sbjct: 181 KPAK 181

[Close]
BLAST of MELO3C010728 vs. NCBI nr
Match: gi|659087388|ref|XP_008444425.1| (PREDICTED: protein Iojap-related, mitochondrial [Cucumis melo])

HSP 1 Score: 370.5 bits (950), Expect = 1.7e-99
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1 

Query: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVSVHSHALSSSTSSSPDKSLLDLQEVETILNKVK 60
           MLAAQRIRSSSAFSSTIRFLQLWNRGVSVHSHALSSSTSSSPDKSLLDLQEVETILNKVK
Sbjct: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVSVHSHALSSSTSSSPDKSLLDLQEVETILNKVK 60

Query: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPSVEGQE 120
           ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPSVEGQE
Sbjct: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPSVEGQE 120

Query: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180
           EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK
Sbjct: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180

Query: 181 PAQKTP 187
           PAQKTP
Sbjct: 181 PAQKTP 186

[Close]
BLAST of MELO3C010728 vs. NCBI nr
Match: gi|778670690|ref|XP_011649516.1| (PREDICTED: protein Iojap-related, mitochondrial [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 1.1e-95
Identity = 177/186 (95.16%), Postives = 182/186 (97.85%), Query Frame = 1 

Query: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVSVHSHALSSSTSSSPDKSLLDLQEVETILNKVK 60
           MLAAQRIRSSSAFSSTIRFLQLWNRGV VH HALSSST+ SPDKSLLDL+EVETILNKVK
Sbjct: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK 60

Query: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPSVEGQE 120
           ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIY++KQKQKGA+QLVLPSVEGQE
Sbjct: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQE 120

Query: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180
           EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK
Sbjct: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180

Query: 181 PAQKTP 187
           P QKTP
Sbjct: 181 PTQKTP 186

[Close]
BLAST of MELO3C010728 vs. NCBI nr
Match: gi|802724134|ref|XP_012085627.1| (PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas])

HSP 1 Score: 237.3 bits (604), Expect = 2.2e-59
Identity = 124/186 (66.67%), Postives = 142/186 (76.34%), Query Frame = 1 

Query: 1   MLAAQRIRSSSAFSSTIRFL-QLWNRGVSVHSHALSSST------SSSPDKSLLDLQEVE 60
           MLAA R RS    S     L + W  G+S  SH  SSST      SSS +K LLDL EVE
Sbjct: 1   MLAALRTRSIHFCSPQPSLLHRSWKLGLSGSSHVFSSSTVESSRSSSSYNKGLLDLNEVE 60

Query: 61  TILNKVKADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVL 120
            +L  VKADDVKVIPV K CDWADYMV ATGRSTWHVKNIAQALIYK KQKQKGA++++L
Sbjct: 61  KVLTDVKADDVKVIPVEKHCDWADYMVIATGRSTWHVKNIAQALIYKAKQKQKGAERMML 120

Query: 121 PSVEGQEEGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRP 180
           PSVEGQE GKWIVIDSGKV++HALDE AR+YYNLE+LW+  T  ++  QDL++A VKIRP
Sbjct: 121 PSVEGQESGKWIVIDSGKVIIHALDEKARAYYNLENLWTCGTSRNEPVQDLEKAFVKIRP 180

[Close]
BLAST of MELO3C010728 vs. NCBI nr
Match: gi|645230683|ref|XP_008222045.1| (PREDICTED: protein Iojap-related, mitochondrial [Prunus mume])

HSP 1 Score: 234.2 bits (596), Expect = 1.9e-58
Identity = 122/182 (67.03%), Postives = 141/182 (77.47%), Query Frame = 1 

Query: 1   MLAAQRIRSSSAFSS-TIRFLQLWNRGVSVHSHALSSSTSSSPDKSLLDLQEVETILNKV 60
           MLAA R RS S +SS +   LQ W  G  V   A SSS +    + LLDLQEVE +L+ V
Sbjct: 25  MLAALRSRSLSLYSSPSSSILQQWKLGFPVLERAFSSSAN----RGLLDLQEVEKVLSDV 84

Query: 61  KADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPSVEGQ 120
           KADDVKVIP    C+WAD+MV ATG+S WHVKNIAQALIYK KQKQKGA++LVLPSVEGQ
Sbjct: 85  KADDVKVIPANDLCEWADFMVLATGKSAWHVKNIAQALIYKSKQKQKGAQRLVLPSVEGQ 144

Query: 121 EEGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKK 180
           E GKWIVIDSGKV+VHALDE AR+YYNLE LWS +   +D+ QDL++A VKIRPKNNSK+
Sbjct: 145 EGGKWIVIDSGKVIVHALDEKARAYYNLEDLWSKKKLEEDTIQDLEKAFVKIRPKNNSKR 202

Query: 181 KP 182
           KP
Sbjct: 205 KP 202

[Close]
BLAST of MELO3C010728 vs. NCBI nr
Match: gi|1000975290|ref|XP_015572122.1| (PREDICTED: protein Iojap-related, mitochondrial [Ricinus communis])

HSP 1 Score: 233.4 bits (594), Expect = 3.2e-58
Identity = 123/192 (64.06%), Postives = 142/192 (73.96%), Query Frame = 1 

Query: 1   MLAAQRIRSSSAFSSTIRFLQ-LWNRGVSVHSHALSSSTSSSP-----DKSLLDLQEVET 60
           MLAA R RS +        L   W    S  SH  SSST  S      +K LLDL EVE 
Sbjct: 1   MLAALRSRSFNLSRQPASLLHGSWKLRFSGSSHVFSSSTMESSSGISINKGLLDLNEVEK 60

Query: 61  ILNKVKADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLP 120
           +L  VKADDVKVIPV+K CDW DYMV ATGRSTWHVKNIAQALIYK KQKQKGA++++LP
Sbjct: 61  VLTDVKADDVKVIPVQKQCDWVDYMVIATGRSTWHVKNIAQALIYKSKQKQKGAQRMMLP 120

Query: 121 SVEGQEEGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPK 180
           SVEGQE GKWIV+DSGKV+VHALDE AR+YYNLE+LW++ T   +  Q+L++A VKIRPK
Sbjct: 121 SVEGQEAGKWIVVDSGKVIVHALDEKARAYYNLENLWTSNTSRKEPVQELEQAFVKIRPK 180

Query: 181 NNSKKKPAQKTP 187
           NNS KKPAQ+ P
Sbjct: 181 NNS-KKPAQRRP 191

The following BLAST results are available for this feature:
BLAST of MELO3C010728 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IOJAM_ARATH1.1e-4555.43Protein Iojap-related, mitochondrial OS=Arabidopsis thaliana GN=At1g67620 PE=2 S... [more]
IOJAP_PSEAB8.5e-1139.58Ribosomal silencing factor RsfS OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN... [more]
IOJAP_SHIFL7.2e-1036.08Ribosomal silencing factor RsfS OS=Shigella flexneri GN=rsfS PE=3 SV=1[more]
IOJAP_ECOLI7.2e-1036.08Ribosomal silencing factor RsfS OS=Escherichia coli (strain K12) GN=rsfS PE=1 SV... [more]
IOJAP_ECOL67.2e-1036.08Ribosomal silencing factor RsfS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC ... [more]
BLAST of MELO3C010728 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNG9_CUCSA7.8e-9695.16Uncharacterized protein OS=Cucumis sativus GN=Csa_2G350450 PE=3 SV=1[more]
A0A067JSC1_JATCU1.5e-5966.67Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17920 PE=3 SV=1[more]
M5XGX3_PRUPE5.0e-5865.93Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012048mg PE=3 SV=1[more]
B9HIN9_POPTR1.2e-5661.62Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s10520g PE=3 SV=1[more]
B9RMM5_RICCO2.7e-5661.19Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1081870 PE=3 SV=1[more]
BLAST of MELO3C010728 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G67620.16.0e-4755.43 Lojap-related protein[more]
BLAST of MELO3C010728 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659087388|ref|XP_008444425.1|1.7e-99100.00PREDICTED: protein Iojap-related, mitochondrial [Cucumis melo][more]
gi|778670690|ref|XP_011649516.1|1.1e-9595.16PREDICTED: protein Iojap-related, mitochondrial [Cucumis sativus][more]
gi|802724134|ref|XP_012085627.1|2.2e-5966.67PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas][more]
gi|645230683|ref|XP_008222045.1|1.9e-5867.03PREDICTED: protein Iojap-related, mitochondrial [Prunus mume][more]
gi|1000975290|ref|XP_015572122.1|3.2e-5864.06PREDICTED: protein Iojap-related, mitochondrial [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004394Iojap/RsfS/C7orf30
IPR004394Iojap/RsfS/C7orf30
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0042335 cuticle development
biological_process GO:0000038 very long-chain fatty acid metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0009409 response to cold
biological_process GO:0042967 acyl-carrier-protein biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005835 fatty acid synthase complex
cellular_component GO:0044434 chloroplast part
molecular_function GO:0003674 molecular_function
molecular_function GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
molecular_function GO:0005507 copper ion binding
molecular_function GO:0051287 NAD binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU46943melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010728T1MELO3C010728T1mRNA
MELO3C010728T2MELO3C010728T2mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU46943MU46943transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004394Protein Iojap/ribosomal silencing factor RsfSPANTHERPTHR21043IOJAP SUPERFAMILY ORTHOLOGcoord: 44..130
score: 5.3
NoneNo IPR availableGENE3DG3DSA:3.30.460.10coord: 49..130
score: 4.1
NoneNo IPR availablePFAMPF02410RsfScoord: 51..131
score: 9.8
NoneNo IPR availableunknownSSF81301Nucleotidyltransferasecoord: 50..132
score: 4.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C010728Csa2G350450Cucumber (Chinese Long) v2cumeB117
MELO3C010728Cla022704Watermelon (97103) v1mewmB300
MELO3C010728ClCG08G017310Watermelon (Charleston Gray)mewcgB295
MELO3C010728Cla97C08G161000Watermelon (97103) v2mewmbB302
MELO3C010728CSPI02G17720Wild cucumber (PI 183967)cpimeB118
MELO3C010728Cucsa.394860Cucumber (Gy14) v1cgymeB646
MELO3C010728CmaCh05G000710Cucurbita maxima (Rimu)cmameB727
MELO3C010728CmoCh05G000780Cucurbita moschata (Rifu)cmomeB718
MELO3C010728Lsi08G016090Bottle gourd (USVL1VR-Ls)lsimeB469
MELO3C010728Cp4.1LG11g00360Cucurbita pepo (Zucchini)cpemeB091
MELO3C010728CsGy2G017710Cucumber (Gy14) v2cgybmeB102
MELO3C010728Carg11947Silver-seed gourdcarmeB0186
MELO3C010728CsaV3_2G025320Cucumber (Chinese Long) v3cucmeB124
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010728Wax gourdmewgoB322
MELO3C010728Wax gourdmewgoB363
MELO3C010728Melon (DHL92) v3.5.1memeB029
MELO3C010728Melon (DHL92) v3.5.1memeB068
MELO3C010728Cucumber (Gy14) v1cgymeB078
MELO3C010728Cucurbita maxima (Rimu)cmameB163
MELO3C010728Cucurbita maxima (Rimu)cmameB373
MELO3C010728Cucurbita maxima (Rimu)cmameB681
MELO3C010728Cucurbita moschata (Rifu)cmomeB152
MELO3C010728Cucurbita moschata (Rifu)cmomeB365
MELO3C010728Cucurbita moschata (Rifu)cmomeB673
MELO3C010728Wild cucumber (PI 183967)cpimeB389
MELO3C010728Cucumber (Chinese Long) v2cumeB393
MELO3C010728Cucurbita pepo (Zucchini)cpemeB037
MELO3C010728Cucurbita pepo (Zucchini)cpemeB402
MELO3C010728Cucurbita pepo (Zucchini)cpemeB762
MELO3C010728Bottle gourd (USVL1VR-Ls)lsimeB303
MELO3C010728Cucumber (Gy14) v2cgybmeB340
MELO3C010728Silver-seed gourdcarmeB0248
MELO3C010728Silver-seed gourdcarmeB0624
MELO3C010728Silver-seed gourdcarmeB0690
MELO3C010728Cucumber (Chinese Long) v3cucmeB402