MELO3C010618 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010618
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description40S ribosomal protein S13
Locationchr3 : 8589529 .. 8589716 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAACAGGAAGGACAAAGACTCCAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAATAG

mRNA sequence

GGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAACAGGAAGGACAAAGACTCCAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAATAG

Coding sequence (CDS)

GGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAACAGGAAGGACAAAGACTCCAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCTCGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAATAG

Protein sequence

LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK*
Homology
[Close]
BLAST of MELO3C010618 vs. Swiss-Prot
Match: RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 8.7e-29
Identity = 61/61 (100.00%), Postives = 59/61 (96.72%), Query Frame = 1 

Query: 1   LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 60
           LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]
BLAST of MELO3C010618 vs. Swiss-Prot
Match: RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.9e-28
Identity = 60/61 (98.36%), Postives = 59/61 (96.72%), Query Frame = 1 

Query: 1   LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 60
           LAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 80  LAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]
BLAST of MELO3C010618 vs. Swiss-Prot
Match: RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.9e-28
Identity = 60/61 (98.36%), Postives = 59/61 (96.72%), Query Frame = 1 

Query: 1   LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 60
           LAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 80  LAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]
BLAST of MELO3C010618 vs. Swiss-Prot
Match: RS13_PEA (40S ribosomal protein S13 OS=Pisum sativum GN=RPS13 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 9.7e-28
Identity = 60/61 (98.36%), Postives = 58/61 (95.08%), Query Frame = 1 

Query: 1   LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 60
           LAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]
BLAST of MELO3C010618 vs. Swiss-Prot
Match: RS131_ORYSJ (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica GN=Os08g0117200 PE=3 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 1.4e-26
Identity = 57/61 (93.44%), Postives = 57/61 (93.44%), Query Frame = 1 

Query: 1   LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 60
           LAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP W
Sbjct: 80  LAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]
BLAST of MELO3C010618 vs. TrEMBL
Match: B6CBQ9_SOYBN (Ribosomal protein S13 OS=Glycine max GN=GLYMA_05G052300 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 9.7e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1   LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 60
           LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]
BLAST of MELO3C010618 vs. TrEMBL
Match: I3T8Q2_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 9.7e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1   LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 60
           LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]
BLAST of MELO3C010618 vs. TrEMBL
Match: V7CE67_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G214600g PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 9.7e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1   LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 60
           LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]
BLAST of MELO3C010618 vs. TrEMBL
Match: W9RRR7_9ROSA (40S ribosomal protein S13 OS=Morus notabilis GN=L484_004363 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 9.7e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1   LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 60
           LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]
BLAST of MELO3C010618 vs. TrEMBL
Match: W9R8M7_9ROSA (40S ribosomal protein S13 OS=Morus notabilis GN=L484_025575 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 9.7e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1   LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 60
           LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]
BLAST of MELO3C010618 vs. TAIR10
Match: AT3G60770.1 (AT3G60770.1 Ribosomal protein S13/S15)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-29
Identity = 60/61 (98.36%), Postives = 59/61 (96.72%), Query Frame = 1 

Query: 1   LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 60
           LAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 80  LAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]
BLAST of MELO3C010618 vs. TAIR10
Match: AT4G00100.1 (AT4G00100.1 ribosomal protein S13A)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-29
Identity = 60/61 (98.36%), Postives = 59/61 (96.72%), Query Frame = 1 

Query: 1   LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 60
           LAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 80  LAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]
BLAST of MELO3C010618 vs. NCBI nr
Match: gi|351722010|ref|NP_001237229.1| (40S ribosomal protein S13 [Glycine max])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1   LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 60
           LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]
BLAST of MELO3C010618 vs. NCBI nr
Match: gi|629099207|gb|KCW64972.1| (hypothetical protein EUGRSUZ_G02515 [Eucalyptus grandis])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1   LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 60
           LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 181 LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 240

Query: 61  K 62
           K
Sbjct: 241 K 241

[Close]
BLAST of MELO3C010618 vs. NCBI nr
Match: gi|629099207|gb|KCW64972.1| (hypothetical protein EUGRSUZ_G02515 [Eucalyptus grandis])

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-17
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 1 

Query: 1  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPP 59
          LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA   ++ ++ PP
Sbjct: 32 LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA---QEEEEAPP 86


HSP 2 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1   LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 60
           LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]
BLAST of MELO3C010618 vs. NCBI nr
Match: gi|659133536|ref|XP_008466776.1| (PREDICTED: 40S ribosomal protein S13-like [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1   LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 60
           LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 47  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 106

Query: 61  K 62
           K
Sbjct: 107 K 107

[Close]
BLAST of MELO3C010618 vs. NCBI nr
Match: gi|951009695|ref|XP_014509360.1| (PREDICTED: 40S ribosomal protein S13 [Vigna radiata var. radiata])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 1   LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 60
           LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

The following BLAST results are available for this feature:
BLAST of MELO3C010618 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS13_SOYBN8.7e-29100.0040S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1[more]
RS131_ARATH1.9e-2898.3640S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1[more]
RS132_ARATH1.9e-2898.3640S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1[more]
RS13_PEA9.7e-2898.3640S ribosomal protein S13 OS=Pisum sativum GN=RPS13 PE=2 SV=1[more]
RS131_ORYSJ1.4e-2693.4440S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica GN=Os08g0117200 PE=3... [more]
BLAST of MELO3C010618 vs. TrEMBL
Match NameE-valueIdentityDescription
B6CBQ9_SOYBN9.7e-27100.00Ribosomal protein S13 OS=Glycine max GN=GLYMA_05G052300 PE=2 SV=1[more]
I3T8Q2_LOTJA9.7e-27100.00Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
V7CE67_PHAVU9.7e-27100.00Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G214600g PE=3 SV=1[more]
W9RRR7_9ROSA9.7e-27100.0040S ribosomal protein S13 OS=Morus notabilis GN=L484_004363 PE=3 SV=1[more]
W9R8M7_9ROSA9.7e-27100.0040S ribosomal protein S13 OS=Morus notabilis GN=L484_025575 PE=3 SV=1[more]
BLAST of MELO3C010618 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G60770.11.1e-2998.36 Ribosomal protein S13/S15[more]
AT4G00100.11.1e-2998.36 ribosomal protein S13A[more]
BLAST of MELO3C010618 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|351722010|ref|NP_001237229.1|1.4e-26100.0040S ribosomal protein S13 [Glycine max][more]
gi|629099207|gb|KCW64972.1|1.4e-26100.00hypothetical protein EUGRSUZ_G02515 [Eucalyptus grandis][more]
gi|629099207|gb|KCW64972.1|2.6e-1784.48hypothetical protein EUGRSUZ_G02515 [Eucalyptus grandis][more]
gi|659133536|ref|XP_008466776.1|1.4e-26100.00PREDICTED: 40S ribosomal protein S13-like [Cucumis melo][more]
gi|951009695|ref|XP_014509360.1|1.4e-26100.00PREDICTED: 40S ribosomal protein S13 [Vigna radiata var. radiata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000589Ribosomal_S15
IPR009068S15_NS1_RNA-bd
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010618T1MELO3C010618T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 4..55
score: 5.2
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 2..61
score: 3.
IPR000589Ribosomal protein S15PROSITEPS00362RIBOSOMAL_S15coord: 19..49
scor
IPR009068S15/NS1, RNA-bindingunknownSSF47060S15/NS1 RNA-binding domaincoord: 4..60
score: 1.06
NoneNo IPR availablePANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 1..61
score: 6.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010618Cucumber (Chinese Long) v3cucmeB290
MELO3C010618Cucumber (Chinese Long) v3cucmeB477
MELO3C010618Watermelon (97103) v2mewmbB287
MELO3C010618Watermelon (97103) v2mewmbB308
MELO3C010618Wax gourdmewgoB323
MELO3C010618Melon (DHL92) v3.5.1memeB127
MELO3C010618Cucumber (Gy14) v1cgymeB341
MELO3C010618Cucurbita maxima (Rimu)cmameB028
MELO3C010618Cucurbita maxima (Rimu)cmameB268
MELO3C010618Cucurbita maxima (Rimu)cmameB680
MELO3C010618Cucurbita moschata (Rifu)cmomeB017
MELO3C010618Cucurbita moschata (Rifu)cmomeB259
MELO3C010618Cucurbita moschata (Rifu)cmomeB672
MELO3C010618Wild cucumber (PI 183967)cpimeB283
MELO3C010618Wild cucumber (PI 183967)cpimeB466
MELO3C010618Cucumber (Chinese Long) v2cumeB293
MELO3C010618Cucumber (Chinese Long) v2cumeB477
MELO3C010618Watermelon (Charleston Gray)mewcgB277
MELO3C010618Watermelon (Charleston Gray)mewcgB301
MELO3C010618Watermelon (97103) v1mewmB309
MELO3C010618Watermelon (97103) v1mewmB337
MELO3C010618Cucurbita pepo (Zucchini)cpemeB168
MELO3C010618Cucurbita pepo (Zucchini)cpemeB401
MELO3C010618Cucurbita pepo (Zucchini)cpemeB722
MELO3C010618Bottle gourd (USVL1VR-Ls)lsimeB307
MELO3C010618Bottle gourd (USVL1VR-Ls)lsimeB475
MELO3C010618Cucumber (Gy14) v2cgybmeB245
MELO3C010618Cucumber (Gy14) v2cgybmeB408
MELO3C010618Silver-seed gourdcarmeB0451
MELO3C010618Silver-seed gourdcarmeB0824